Wall clock time and date at job start Tue Mar 31 2020 16:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00338 * 3 2 1 5 5 H 1.48501 * 109.46721 * 30.00368 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00259 * 3 2 1 7 7 C 1.38954 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99944 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21633 * 120.00238 * 359.72097 * 14 13 12 16 16 C 1.47169 * 119.99709 * 179.72413 * 14 13 12 17 17 C 1.36031 * 123.46615 * 0.02562 * 16 14 13 18 18 S 1.70437 * 110.83267 * 179.97438 * 17 16 14 19 19 C 1.75502 * 92.45271 * 0.02562 * 18 17 16 20 20 C 1.32830 * 110.57888 * 359.74869 * 19 18 17 21 21 Br 1.89098 * 123.46812 * 180.21666 * 20 19 18 22 22 H 0.96997 * 120.00181 * 359.97438 * 1 2 3 23 23 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 24 24 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 25 25 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 26 26 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 27 27 H 1.08011 * 124.58470 * 359.96152 * 17 16 14 28 28 H 1.08004 * 124.71462 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3707 -0.0022 13 7 6.0490 -3.7519 -0.0026 14 6 7.3741 -3.9981 0.0021 15 8 8.1645 -3.0736 0.0015 16 6 7.8647 -5.3856 0.0078 17 6 7.0448 -6.4711 0.0083 18 16 7.9506 -7.9149 0.0149 19 6 9.4758 -7.0466 0.0180 20 6 9.2664 -5.7350 0.0086 21 35 10.6597 -4.4565 0.0024 22 1 -0.4850 0.8400 0.0004 23 1 3.8649 -0.3634 -0.0007 24 1 5.9247 -1.8564 0.8874 25 1 5.9234 -1.8571 -0.8926 26 1 5.4187 -4.4891 -0.0018 27 1 5.9657 -6.4244 0.0051 28 1 10.4495 -7.5139 0.0220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344159269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:02 Heat of formation + Delta-G solvation = -27.147256 kcal Electronic energy + Delta-G solvation = -17298.873342 eV Core-core repulsion = 14102.372856 eV Total energy + Delta-G solvation = -3196.500486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.94733 -38.47228 -37.05604 -34.59653 -33.83056 -31.86002 -31.54135 -29.70800 -27.77747 -25.16184 -24.10988 -21.27256 -19.81019 -19.27686 -18.72683 -18.09956 -17.24490 -15.75460 -15.46561 -15.41326 -14.96434 -14.50397 -14.28313 -13.61380 -13.45503 -13.29296 -13.10034 -12.84538 -12.51326 -12.20255 -12.08517 -11.62944 -11.25796 -10.98476 -10.66463 -10.51050 -10.09001 -9.72996 -9.46505 -9.25255 -8.96770 -8.81866 -8.64038 -8.33666 -6.43635 -3.96387 0.41263 0.84265 1.34178 1.49562 2.03713 2.97725 3.02553 3.10298 3.18999 3.29446 3.53143 4.01231 4.34401 4.49629 4.88114 4.98615 5.09191 5.11256 5.51911 5.53068 5.67339 5.77096 5.78285 6.48989 7.40818 7.65655 7.96835 8.28885 8.42389 8.78365 9.26541 9.59475 10.68368 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.003015 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.035027 B = 9285.365301 C =10510.242902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.581 6.581 12 C 0.108 3.892 13 N -0.701 5.701 14 C 0.568 3.432 15 O -0.521 6.521 16 C -0.134 4.134 17 C -0.204 4.204 18 S 0.226 5.774 19 C -0.213 4.213 20 C -0.062 4.062 21 Br 0.003 6.997 22 H 0.276 0.724 23 H 0.375 0.625 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.409 0.591 27 H 0.182 0.818 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.624 -13.307 0.014 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.212 5.212 10 C 0.223 3.777 11 O -0.465 6.465 12 C -0.019 4.019 13 N -0.356 5.356 14 C 0.352 3.648 15 O -0.399 6.399 16 C -0.152 4.152 17 C -0.343 4.343 18 S 0.491 5.509 19 C -0.350 4.350 20 C -0.154 4.154 21 Br 0.087 6.913 22 H 0.087 0.913 23 H 0.208 0.792 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.248 0.752 27 H 0.200 0.800 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 21.659 -14.241 0.010 25.922 hybrid contribution 0.142 2.316 0.018 2.321 sum 21.801 -11.925 0.028 24.850 Atomic orbital electron populations 1.69617 1.05712 1.27863 1.47996 1.25076 0.95548 0.98206 0.97076 0.86671 0.79930 0.83730 0.79178 1.19356 1.19938 1.19197 1.19437 0.78926 0.96802 1.48750 0.86070 1.42121 1.07725 1.06144 1.65232 1.19616 0.88012 0.84902 0.85129 1.90528 1.69212 1.30928 1.55876 1.20991 0.93763 0.83587 1.03599 1.45519 1.06493 1.09333 1.74249 1.17399 0.82368 0.87484 0.77552 1.90867 1.54800 1.44813 1.49377 1.19965 0.91309 0.94519 1.09425 1.25827 1.05604 0.97410 1.05457 1.83128 0.93653 1.06089 1.68075 1.25570 1.03790 0.95798 1.09887 1.21634 0.92908 0.93516 1.07329 1.96758 1.41399 1.55762 1.97350 0.91349 0.79193 0.89462 0.89445 0.75235 0.80042 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.74 13.96 55.50 0.77 -23.96 15 2 C 0.05 1.21 5.50 -17.46 -0.10 1.11 15 3 Si 0.88 18.88 27.74 -169.99 -4.71 14.17 15 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 15 7 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 15 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 15 9 N -0.57 -13.22 5.09 -10.96 -0.06 -13.28 15 10 C 0.44 9.47 7.85 -10.98 -0.09 9.38 15 11 O -0.58 -14.37 15.24 5.55 0.08 -14.28 15 12 C 0.11 1.85 6.15 -5.19 -0.03 1.82 15 13 N -0.70 -11.18 5.50 -62.64 -0.34 -11.52 15 14 C 0.57 8.94 7.79 -12.63 -0.10 8.84 15 15 O -0.52 -9.33 14.68 5.25 0.08 -9.25 15 16 C -0.13 -1.73 5.98 -104.62 -0.63 -2.36 15 17 C -0.20 -2.08 10.38 29.94 0.31 -1.77 15 18 S 0.23 1.68 23.02 -107.50 -2.47 -0.79 15 19 C -0.21 -1.85 10.97 28.87 0.32 -1.53 15 20 C -0.06 -0.74 6.39 -38.99 -0.25 -0.99 15 21 Br 0.00 0.04 31.69 -68.01 -2.16 -2.12 15 22 H 0.28 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.37 7.61 5.76 -40.82 -0.24 7.38 15 24 H 0.09 1.40 8.14 -51.92 -0.42 0.98 15 25 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 26 H 0.41 6.30 5.93 -40.82 -0.24 6.06 15 27 H 0.18 1.64 7.01 -52.48 -0.37 1.27 15 28 H 0.18 1.09 8.06 -52.48 -0.42 0.66 15 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -32.08 287.57 -6.86 -38.93 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -1.67 Total: 11.91 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.71 Total: 5.87 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.37 Total: -48.76 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.54 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.17 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.16 Total: -2.12 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.08 -6.86 -38.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344159269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.784 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds