Wall clock time and date at job start Tue Mar 31 2020 16:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00338 * 3 2 1 5 5 H 1.48501 * 109.46721 * 30.00368 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00259 * 3 2 1 7 7 C 1.38954 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00029 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99944 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21633 * 120.00238 * 359.72097 * 14 13 12 16 16 C 1.47169 * 119.99709 * 179.72413 * 14 13 12 17 17 C 1.36031 * 123.46615 * 0.02562 * 16 14 13 18 18 S 1.70437 * 110.83267 * 179.97438 * 17 16 14 19 19 C 1.75502 * 92.45271 * 0.02562 * 18 17 16 20 20 C 1.32830 * 110.57888 * 359.74869 * 19 18 17 21 21 Br 1.89098 * 123.46812 * 180.21666 * 20 19 18 22 22 H 0.96997 * 120.00181 * 359.97438 * 1 2 3 23 23 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 24 24 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 25 25 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 26 26 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 27 27 H 1.08011 * 124.58470 * 359.96152 * 17 16 14 28 28 H 1.08004 * 124.71462 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3707 -0.0022 13 7 6.0490 -3.7519 -0.0026 14 6 7.3741 -3.9981 0.0021 15 8 8.1645 -3.0736 0.0015 16 6 7.8647 -5.3856 0.0078 17 6 7.0448 -6.4711 0.0083 18 16 7.9506 -7.9149 0.0149 19 6 9.4758 -7.0466 0.0180 20 6 9.2664 -5.7350 0.0086 21 35 10.6597 -4.4565 0.0024 22 1 -0.4850 0.8400 0.0004 23 1 3.8649 -0.3634 -0.0007 24 1 5.9247 -1.8564 0.8874 25 1 5.9234 -1.8571 -0.8926 26 1 5.4187 -4.4891 -0.0018 27 1 5.9657 -6.4244 0.0051 28 1 10.4495 -7.5139 0.0220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344159269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:01 Heat of formation + Delta-G solvation = -51.411001 kcal Electronic energy + Delta-G solvation = -17299.925497 eV Core-core repulsion = 14102.372856 eV Total energy + Delta-G solvation = -3197.552641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19765 -40.12821 -38.00474 -36.30964 -35.38549 -33.84933 -32.43674 -30.64454 -29.15661 -26.59242 -25.45851 -22.32830 -21.50371 -20.77738 -20.06372 -19.15830 -18.30153 -17.38213 -16.90667 -16.81814 -16.49498 -15.72968 -15.66602 -15.07271 -14.60624 -14.36991 -14.27357 -14.22794 -13.95890 -13.59591 -13.53553 -12.97194 -12.45795 -12.41424 -12.01231 -11.82406 -11.59302 -11.44982 -10.67759 -10.52942 -10.35147 -10.23920 -9.99938 -9.38631 -8.46537 -6.08450 -0.37419 0.12299 0.59350 0.60831 1.27641 1.30448 1.33328 1.43098 1.77061 1.95632 2.19603 2.20017 2.85478 3.09723 3.57614 3.82664 4.01716 4.25130 4.34630 4.40253 4.40678 4.74507 4.80765 5.19764 5.47378 5.86901 6.43495 6.47409 6.76858 7.09420 7.28194 7.76035 8.69682 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.003015 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.035027 B = 9285.365301 C =10510.242902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.120 3.880 13 N -0.705 5.705 14 C 0.568 3.432 15 O -0.548 6.548 16 C -0.167 4.167 17 C -0.211 4.211 18 S 0.314 5.686 19 C -0.205 4.205 20 C -0.090 4.090 21 Br -0.016 7.016 22 H 0.281 0.719 23 H 0.392 0.608 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.411 0.589 27 H 0.189 0.811 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.941 -13.757 0.055 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.500 6.500 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.354 3.646 15 O -0.428 6.428 16 C -0.185 4.185 17 C -0.350 4.350 18 S 0.580 5.420 19 C -0.343 4.343 20 C -0.181 4.181 21 Br 0.069 6.931 22 H 0.091 0.909 23 H 0.228 0.772 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.249 0.751 27 H 0.206 0.794 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 24.001 -14.723 0.053 28.157 hybrid contribution -0.627 2.160 0.002 2.249 sum 23.374 -12.564 0.055 26.536 Atomic orbital electron populations 1.69776 1.07980 1.29456 1.49192 1.26062 0.96442 1.02569 0.95735 0.85460 0.79578 0.77124 0.80071 1.18103 1.19790 1.15664 1.19028 0.80904 0.95286 1.50763 0.91726 1.41932 1.06181 1.07435 1.66176 1.20462 0.89957 0.83903 0.82377 1.90515 1.70741 1.32265 1.56481 1.20889 0.89610 0.84957 1.05306 1.45541 1.06926 1.08759 1.74753 1.17802 0.81673 0.88648 0.76483 1.90841 1.55202 1.45989 1.50724 1.19807 0.92326 0.93487 1.12916 1.26093 1.06320 0.98583 1.03992 1.82924 0.91220 1.02899 1.64994 1.26001 1.05995 0.95041 1.07244 1.21656 0.92062 0.94299 1.10060 1.96717 1.41914 1.56964 1.97544 0.90913 0.77225 0.87701 0.87600 0.75056 0.79427 0.77784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.96 21.67 0.30 -53.70 15 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 15 3 Si 0.96 38.01 27.74 68.60 1.90 39.91 15 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 6 H -0.23 -7.93 6.52 99.48 0.65 -7.28 15 7 C -0.33 -18.64 10.16 84.04 0.85 -17.78 15 8 H 0.06 4.29 7.39 -2.91 -0.02 4.27 15 9 N -0.58 -26.37 5.09 -306.98 -1.56 -27.94 15 10 C 0.45 19.22 7.85 87.66 0.69 19.90 15 11 O -0.61 -31.05 15.24 -3.07 -0.05 -31.10 15 12 C 0.12 3.92 6.15 85.63 0.53 4.45 15 13 N -0.71 -21.90 5.50 -470.34 -2.59 -24.48 15 14 C 0.57 17.43 7.79 86.59 0.67 18.10 15 15 O -0.55 -19.27 14.68 -4.14 -0.06 -19.33 15 16 C -0.17 -4.11 5.98 -19.86 -0.12 -4.23 15 17 C -0.21 -3.86 10.38 67.31 0.70 -3.16 15 18 S 0.31 3.56 23.02 -56.49 -1.30 2.26 15 19 C -0.20 -2.95 10.97 66.64 0.73 -2.22 15 20 C -0.09 -1.99 6.39 22.68 0.14 -1.84 15 21 Br -0.02 -0.38 31.69 -20.37 -0.65 -1.02 15 22 H 0.28 15.02 8.31 -92.71 -0.77 14.25 15 23 H 0.39 15.07 5.76 -92.71 -0.53 14.53 15 24 H 0.11 3.13 8.14 -2.38 -0.02 3.11 15 25 H 0.11 3.14 8.14 -2.39 -0.02 3.12 15 26 H 0.41 12.49 5.93 -92.71 -0.55 11.94 15 27 H 0.19 3.09 7.01 -2.90 -0.02 3.07 15 28 H 0.21 1.73 8.06 -2.91 -0.02 1.71 15 Total: -1.00 -73.25 287.57 0.77 -72.48 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.10 Total: 29.66 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 4.67 Total: 13.26 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.85 Total: -106.12 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.11 Total: -50.42 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.30 Total: 2.26 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.65 Total: -1.02 kcal Total: -73.25 0.77 -72.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344159269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.066 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds