Wall clock time and date at job start Tue Mar 31 2020 16:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00159 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00281 * 3 2 1 6 6 H 1.48509 * 109.47046 * 149.99910 * 3 2 1 7 7 C 1.38956 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21695 * 120.00046 * 359.97438 * 14 13 12 16 16 C 1.46576 * 119.99700 * 179.97438 * 14 13 12 17 17 C 1.36668 * 125.45230 * 179.97438 * 16 14 13 18 18 C 1.37511 * 113.28818 * 179.97438 * 17 16 14 19 19 Br 1.89106 * 122.45316 * 179.97438 * 18 17 16 20 20 C 1.33860 * 115.08985 * 359.97438 * 18 17 16 21 21 S 1.70615 * 110.95302 * 359.76829 * 20 18 17 22 22 H 0.96996 * 119.99927 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 25 25 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 26 26 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 27 27 H 1.07999 * 123.34823 * 359.96148 * 17 16 14 28 28 H 1.07998 * 124.52137 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0491 -3.7518 0.0017 14 6 7.3742 -3.9981 0.0013 15 8 8.1650 -3.0731 -0.0001 16 6 7.8627 -5.3800 0.0025 17 6 9.1765 -5.7563 0.0017 18 6 9.3514 -7.1203 0.0037 19 35 11.0632 -7.9239 0.0025 20 6 8.2211 -7.8374 0.0066 21 16 6.8523 -6.8189 0.0134 22 1 -0.4850 0.8400 0.0004 23 1 3.8648 -0.3633 0.0007 24 1 5.9241 -1.8567 0.8910 25 1 5.9240 -1.8567 -0.8890 26 1 5.4187 -4.4890 0.0016 27 1 9.9957 -5.0525 -0.0005 28 1 8.1811 -8.9167 0.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344168491.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:32 Heat of formation + Delta-G solvation = -32.851000 kcal Electronic energy + Delta-G solvation = -17045.811053 eV Core-core repulsion = 13849.063235 eV Total energy + Delta-G solvation = -3196.747819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.92257 -38.57568 -37.79909 -34.65884 -33.87211 -31.88342 -31.65320 -29.89447 -28.03350 -25.30551 -24.03298 -21.19880 -19.95474 -19.47502 -19.03482 -18.31275 -16.53550 -16.20381 -15.59814 -15.32763 -15.28326 -14.70160 -14.36858 -13.86011 -13.57440 -13.41423 -13.19103 -12.67110 -12.58321 -12.23856 -12.20996 -11.41091 -11.28078 -11.07015 -10.68435 -10.61862 -10.21141 -10.10342 -9.75425 -9.33708 -9.06263 -8.85548 -8.81135 -8.36068 -6.45594 -3.98506 0.09896 0.76443 1.19927 1.78507 1.88162 2.95626 3.00407 3.04139 3.04788 3.10517 3.48935 3.99308 4.42408 4.49098 4.75247 4.84830 5.08968 5.27360 5.48924 5.62669 5.68576 5.70604 5.72437 6.32326 7.37357 7.48231 7.93438 8.09592 8.39076 8.76189 9.24048 9.56362 10.66354 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.045722 B = 0.002299 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.249198 B =12175.156508 C =12772.254045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.047 3.953 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.702 5.702 14 C 0.589 3.411 15 O -0.532 6.532 16 C -0.256 4.256 17 C -0.041 4.041 18 C -0.117 4.117 19 Br -0.027 7.027 20 C -0.212 4.212 21 S 0.271 5.729 22 H 0.276 0.724 23 H 0.375 0.625 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.410 0.590 27 H 0.163 0.837 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.864 -15.021 0.009 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.464 6.464 12 C -0.021 4.021 13 N -0.356 5.356 14 C 0.374 3.626 15 O -0.411 6.411 16 C -0.377 4.377 17 C -0.075 4.075 18 C -0.211 4.211 19 Br 0.056 6.944 20 C -0.353 4.353 21 S 0.538 5.462 22 H 0.087 0.913 23 H 0.208 0.792 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.248 0.752 27 H 0.180 0.820 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 19.797 -15.464 0.020 25.120 hybrid contribution 1.448 1.332 0.005 1.968 sum 21.245 -14.132 0.025 25.516 Atomic orbital electron populations 1.69615 1.05731 1.27903 1.47824 1.25069 0.95531 0.98192 0.97007 0.86675 0.79918 0.83735 0.79182 1.19341 1.19918 1.19215 1.19446 0.78885 0.96852 1.48834 0.86011 1.42106 1.07741 1.06093 1.65107 1.19560 0.87882 0.84986 0.85414 1.90540 1.69097 1.30863 1.55852 1.21052 0.94110 0.83123 1.03813 1.45549 1.06278 1.09739 1.74011 1.16766 0.82352 0.86397 0.77069 1.90832 1.55405 1.44240 1.50584 1.24649 0.97773 0.97845 1.17447 1.20539 0.96379 0.93786 0.96761 1.20461 0.92622 0.94453 1.13547 1.96721 1.18669 1.81017 1.97968 1.25454 0.96756 1.06108 1.06985 1.83552 1.05404 0.92855 1.64396 0.91312 0.79182 0.89235 0.89219 0.75184 0.81975 0.80301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.46 13.96 55.50 0.77 -23.68 15 2 C 0.05 1.22 5.50 -17.46 -0.10 1.13 15 3 Si 0.88 18.58 27.74 -169.99 -4.71 13.87 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.15 6.52 56.52 0.37 -4.78 15 7 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 15 8 H 0.12 3.74 7.39 -52.49 -0.39 3.35 15 9 N -0.57 -12.94 5.09 -10.96 -0.06 -13.00 15 10 C 0.44 9.27 7.85 -10.98 -0.09 9.19 15 11 O -0.58 -14.16 15.24 5.55 0.08 -14.08 15 12 C 0.11 1.77 6.15 -5.19 -0.03 1.74 15 13 N -0.70 -11.00 5.52 -62.83 -0.35 -11.35 15 14 C 0.59 8.95 7.78 -12.90 -0.10 8.85 15 15 O -0.53 -9.40 16.84 5.19 0.09 -9.31 15 16 C -0.26 -3.15 6.45 -36.79 -0.24 -3.39 15 17 C -0.04 -0.47 9.86 -40.41 -0.40 -0.87 15 18 C -0.12 -1.15 6.15 -41.38 -0.25 -1.40 15 19 Br -0.03 -0.24 33.86 -68.01 -2.30 -2.54 15 20 C -0.21 -1.80 10.74 29.19 0.31 -1.48 15 21 S 0.27 2.58 22.15 -107.50 -2.38 0.20 15 22 H 0.28 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.37 7.43 5.76 -40.82 -0.24 7.20 15 24 H 0.09 1.38 8.14 -51.93 -0.42 0.95 15 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.41 6.33 6.55 -40.82 -0.27 6.06 15 27 H 0.16 1.79 8.06 -52.49 -0.42 1.37 15 28 H 0.18 1.07 8.06 -52.49 -0.42 0.65 15 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -31.08 292.19 -7.24 -38.33 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -1.75 Total: 11.96 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.04 Total: 5.21 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.37 Total: -48.03 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.71 Total: 13.87 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.38 Total: 0.20 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.30 Total: -2.54 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.08 -7.24 -38.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344168491.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds