Wall clock time and date at job start Tue Mar 31 2020 16:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00159 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00281 * 3 2 1 6 6 H 1.48509 * 109.47046 * 149.99910 * 3 2 1 7 7 C 1.38956 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21695 * 120.00046 * 359.97438 * 14 13 12 16 16 C 1.46576 * 119.99700 * 179.97438 * 14 13 12 17 17 C 1.36668 * 125.45230 * 179.97438 * 16 14 13 18 18 C 1.37511 * 113.28818 * 179.97438 * 17 16 14 19 19 Br 1.89106 * 122.45316 * 179.97438 * 18 17 16 20 20 C 1.33860 * 115.08985 * 359.97438 * 18 17 16 21 21 S 1.70615 * 110.95302 * 359.76829 * 20 18 17 22 22 H 0.96996 * 119.99927 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 25 25 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 26 26 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 27 27 H 1.07999 * 123.34823 * 359.96148 * 17 16 14 28 28 H 1.07998 * 124.52137 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0491 -3.7518 0.0017 14 6 7.3742 -3.9981 0.0013 15 8 8.1650 -3.0731 -0.0001 16 6 7.8627 -5.3800 0.0025 17 6 9.1765 -5.7563 0.0017 18 6 9.3514 -7.1203 0.0037 19 35 11.0632 -7.9239 0.0025 20 6 8.2211 -7.8374 0.0066 21 16 6.8523 -6.8189 0.0134 22 1 -0.4850 0.8400 0.0004 23 1 3.8648 -0.3633 0.0007 24 1 5.9241 -1.8567 0.8910 25 1 5.9240 -1.8567 -0.8890 26 1 5.4187 -4.4890 0.0016 27 1 9.9957 -5.0525 -0.0005 28 1 8.1811 -8.9167 0.0081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344168491.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:32 Heat of formation + Delta-G solvation = -55.891692 kcal Electronic energy + Delta-G solvation = -17046.810173 eV Core-core repulsion = 13849.063235 eV Total energy + Delta-G solvation = -3197.746938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19664 -40.14359 -38.76433 -36.32829 -35.44361 -33.84522 -32.47985 -30.81673 -29.35027 -26.73767 -25.38279 -22.29627 -21.54157 -20.83696 -20.22005 -19.75492 -17.70194 -17.54432 -16.91026 -16.85700 -16.64375 -16.06602 -15.73704 -15.17721 -14.80534 -14.58197 -14.33447 -14.16462 -14.05915 -13.66978 -13.44787 -12.96995 -12.44443 -12.19365 -12.00094 -11.81431 -11.58408 -11.44520 -11.28687 -10.68372 -10.44094 -10.31730 -10.04888 -9.57682 -8.45486 -6.07643 -0.73613 0.02498 0.37593 0.94252 1.13248 1.31567 1.34568 1.44448 1.76729 1.84009 1.95736 2.20814 2.82007 3.10871 3.57328 3.88600 3.98469 4.07272 4.35424 4.37175 4.47886 4.76177 4.88597 5.04922 5.47604 5.87766 6.26066 6.47578 6.77695 6.89561 7.28193 7.76423 8.70750 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.045722 B = 0.002299 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.249198 B =12175.156508 C =12772.254045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.613 6.613 12 C 0.117 3.883 13 N -0.707 5.707 14 C 0.594 3.406 15 O -0.561 6.561 16 C -0.290 4.290 17 C -0.033 4.033 18 C -0.135 4.135 19 Br -0.017 7.017 20 C -0.190 4.190 21 S 0.296 5.704 22 H 0.281 0.719 23 H 0.393 0.607 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.410 0.590 27 H 0.159 0.841 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.283 -14.918 0.048 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.215 5.215 10 C 0.231 3.769 11 O -0.499 6.499 12 C -0.011 4.011 13 N -0.360 5.360 14 C 0.381 3.619 15 O -0.442 6.442 16 C -0.411 4.411 17 C -0.067 4.067 18 C -0.227 4.227 19 Br 0.067 6.933 20 C -0.331 4.331 21 S 0.563 5.437 22 H 0.091 0.909 23 H 0.228 0.772 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.249 0.751 27 H 0.177 0.823 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 22.237 -15.384 0.061 27.040 hybrid contribution 0.701 1.068 -0.011 1.278 sum 22.938 -14.315 0.050 27.039 Atomic orbital electron populations 1.69776 1.08048 1.29477 1.49120 1.26049 0.96390 1.02543 0.95636 0.85465 0.79624 0.77089 0.80071 1.18103 1.19903 1.15515 1.19039 0.80916 0.95326 1.50838 0.91710 1.41904 1.06158 1.07397 1.66047 1.20424 0.89889 0.83973 0.82601 1.90528 1.70679 1.32252 1.56478 1.20990 0.89884 0.84351 1.05839 1.45576 1.06695 1.09280 1.74468 1.17020 0.81597 0.87343 0.75935 1.90806 1.55829 1.45516 1.52044 1.24405 0.98784 0.97468 1.20484 1.20627 0.95958 0.94585 0.95572 1.20486 0.93622 0.93995 1.14599 1.96734 1.18021 1.80576 1.98004 1.25832 0.95799 1.07402 1.04040 1.83528 1.05038 0.91499 1.63663 0.90908 0.77151 0.87159 0.87063 0.75143 0.82301 0.77414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 13.96 21.67 0.30 -53.18 15 2 C -0.01 -0.32 5.50 84.93 0.47 0.15 15 3 Si 0.96 37.24 27.74 68.60 1.90 39.14 15 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.23 -7.64 6.52 99.48 0.65 -6.99 15 7 C -0.33 -18.45 10.16 84.04 0.85 -17.60 15 8 H 0.06 4.25 7.39 -2.91 -0.02 4.23 15 9 N -0.58 -25.66 5.09 -306.99 -1.56 -27.22 15 10 C 0.44 18.70 7.85 87.66 0.69 19.39 15 11 O -0.61 -30.61 15.24 -3.05 -0.05 -30.65 15 12 C 0.12 3.66 6.15 85.63 0.53 4.19 15 13 N -0.71 -21.36 5.52 -470.90 -2.60 -23.96 15 14 C 0.59 17.40 7.78 86.42 0.67 18.08 15 15 O -0.56 -19.20 16.84 -4.33 -0.07 -19.28 15 16 C -0.29 -6.81 6.45 24.08 0.16 -6.65 15 17 C -0.03 -0.70 9.86 21.73 0.21 -0.49 15 18 C -0.13 -2.35 6.15 21.10 0.13 -2.22 15 19 Br -0.02 -0.26 33.86 -20.37 -0.69 -0.95 15 20 C -0.19 -2.69 10.74 66.82 0.72 -1.97 15 21 S 0.30 5.10 22.15 -56.49 -1.25 3.84 15 22 H 0.28 14.88 8.31 -92.71 -0.77 14.11 15 23 H 0.39 14.59 5.76 -92.71 -0.53 14.06 15 24 H 0.11 3.09 8.14 -2.39 -0.02 3.07 15 25 H 0.11 3.09 8.14 -2.38 -0.02 3.08 15 26 H 0.41 12.43 6.55 -92.71 -0.61 11.83 15 27 H 0.16 3.39 8.06 -2.91 -0.02 3.36 15 28 H 0.21 1.68 8.06 -2.91 -0.02 1.65 15 Total: -1.00 -70.19 292.19 0.45 -69.74 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.04 Total: 29.65 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 4.43 Total: 12.88 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.86 Total: -104.37 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.12 Total: -49.93 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 1.90 Total: 39.14 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.25 Total: 3.84 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.69 Total: -0.95 kcal Total: -70.19 0.45 -69.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344168491.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.844 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds