Wall clock time and date at job start Tue Mar 31 2020 16:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46470 * 60.00276 * 9 7 5 11 11 H 1.48495 * 109.47116 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47160 * 300.00311 * 9 7 5 13 13 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 14 14 C 1.46900 * 110.99736 * 58.95813 * 13 2 1 15 15 C 1.46895 * 111.00186 * 295.00225 * 13 2 1 16 16 C 1.53009 * 109.47166 * 189.99663 * 15 13 2 17 17 N 1.46895 * 109.47166 * 179.97438 * 16 15 13 18 18 C 1.46961 * 110.99901 * 293.80135 * 17 16 15 19 19 C 1.53054 * 109.36178 * 176.81475 * 18 17 16 20 20 N 1.46950 * 109.36679 * 58.39667 * 19 18 17 21 21 C 1.39680 * 111.00104 * 176.81033 * 20 19 18 22 22 C 1.38913 * 120.07179 * 123.52635 * 21 20 19 23 23 C 1.38106 * 119.92042 * 179.77287 * 22 21 20 24 24 C 1.38285 * 120.07566 * 0.50900 * 23 22 21 25 25 C 1.38279 * 120.14982 * 359.74002 * 24 23 22 26 26 C 1.38102 * 120.07570 * 0.02562 * 25 24 23 27 27 C 1.46961 * 110.88429 * 300.68005 * 20 19 18 28 28 C 1.46959 * 110.99954 * 169.99958 * 17 16 15 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47292 * 59.99623 * 14 13 2 36 36 H 1.09002 * 109.47267 * 179.97438 * 14 13 2 37 37 H 1.09000 * 109.47210 * 300.00139 * 14 13 2 38 38 H 1.08999 * 109.47066 * 309.99575 * 15 13 2 39 39 H 1.09001 * 109.47511 * 70.00176 * 15 13 2 40 40 H 1.09000 * 109.47120 * 300.00471 * 16 15 13 41 41 H 1.09001 * 109.46487 * 59.99886 * 16 15 13 42 42 H 1.08995 * 109.48507 * 296.77329 * 18 17 16 43 43 H 1.08993 * 109.48845 * 56.84824 * 18 17 16 44 44 H 1.09005 * 109.48481 * 298.43456 * 19 18 17 45 45 H 1.08999 * 109.48955 * 178.37171 * 19 18 17 46 46 H 1.07994 * 120.04232 * 0.02562 * 22 21 20 47 47 H 1.07996 * 119.95971 * 180.24994 * 23 22 21 48 48 H 1.08003 * 119.92273 * 179.77276 * 24 23 22 49 49 H 1.08006 * 119.96598 * 180.02562 * 25 24 23 50 50 H 1.08004 * 120.03709 * 179.97438 * 26 25 24 51 51 H 1.08994 * 109.49094 * 299.35365 * 27 20 19 52 52 H 1.09003 * 109.48675 * 179.28365 * 27 20 19 53 53 H 1.08999 * 109.48728 * 303.16050 * 28 17 16 54 54 H 1.09005 * 109.48628 * 63.22595 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.6846 -1.6861 -1.2269 11 1 6.5872 -1.7623 -3.6484 12 1 6.4845 0.3698 -2.4972 13 7 2.0196 -0.6924 1.1995 14 6 1.5283 -2.0760 1.2460 15 6 1.6487 0.0393 2.4181 16 6 2.3788 -0.5661 3.6187 17 7 2.0083 0.1659 4.8371 18 6 2.5035 1.5489 4.7918 19 6 2.0301 2.2986 6.0393 20 7 2.5198 1.6059 7.2392 21 6 2.1676 2.3020 8.3979 22 6 1.4368 1.6688 9.3952 23 6 1.0942 2.3586 10.5416 24 6 1.4688 3.6812 10.6926 25 6 2.1918 4.3160 9.6994 26 6 2.5418 3.6307 8.5527 27 6 2.0246 0.2230 7.2846 28 6 2.4981 -0.5267 6.0372 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2617 -2.1369 34 1 4.0610 -2.2453 -4.0343 35 1 1.8762 -2.6150 0.3648 36 1 1.9060 -2.5657 2.1436 37 1 0.4385 -2.0742 1.2639 38 1 1.9297 1.0871 2.3124 39 1 0.5722 -0.0344 2.5727 40 1 2.0978 -1.6140 3.7243 41 1 3.4553 -0.4924 3.4641 42 1 3.5930 1.5441 4.7620 43 1 2.1171 2.0444 3.9012 44 1 0.9405 2.3267 6.0550 45 1 2.4203 3.3162 6.0220 46 1 1.1404 0.6372 9.2762 47 1 0.5296 1.8657 11.3192 48 1 1.1964 4.2193 11.5885 49 1 2.4831 5.3489 9.8206 50 1 3.1062 4.1272 7.7772 51 1 0.9351 0.2276 7.3144 52 1 2.4111 -0.2726 8.1753 53 1 2.1078 -1.5443 6.0544 54 1 3.5876 -0.5549 6.0215 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351264689.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:23 Heat of formation + Delta-G solvation = 34.667044 kcal Electronic energy + Delta-G solvation = -28569.869286 eV Core-core repulsion = 24927.041068 eV Total energy + Delta-G solvation = -3642.828218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.36997 -39.81705 -38.92040 -36.54277 -34.94421 -32.92987 -32.60350 -31.40224 -31.04553 -29.30226 -29.09982 -27.37836 -25.92687 -25.22199 -24.88611 -23.00435 -22.55892 -21.88463 -20.76853 -20.28033 -18.68560 -18.34894 -17.36413 -16.76434 -16.59978 -16.50547 -16.33916 -16.00982 -15.87026 -15.51880 -15.30973 -15.00413 -14.88956 -14.59495 -14.46483 -14.35547 -14.04581 -13.84417 -13.56984 -13.36160 -13.08991 -12.95893 -12.92337 -12.79597 -12.60335 -12.46901 -12.36930 -12.30462 -12.21328 -12.14122 -11.90124 -11.83183 -11.71048 -11.38914 -11.10001 -10.96941 -10.66465 -10.46317 -9.83777 -9.39536 -8.90236 -8.79322 -8.09093 -6.13755 0.47158 0.50678 1.41807 1.44218 1.51697 2.47588 2.60721 2.70315 2.98301 3.23087 3.41701 3.75620 3.83922 3.95163 4.06015 4.09990 4.20374 4.22939 4.25602 4.31388 4.32251 4.35256 4.45719 4.50569 4.54590 4.57191 4.59113 4.61530 4.64961 4.73616 4.76171 4.78730 4.84593 4.91035 4.94241 4.94800 5.00815 5.09325 5.14424 5.21071 5.23282 5.31776 5.32481 5.50692 5.53164 5.67977 5.71819 5.83235 5.90689 5.93914 6.00362 6.07736 6.32998 6.36406 6.46764 6.54398 6.99793 7.51772 9.02464 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.002080 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.233135 B =13460.093455 C =13908.030178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.499 4.499 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.536 5.536 14 C 0.031 3.969 15 C 0.067 3.933 16 C 0.071 3.929 17 N -0.540 5.540 18 C 0.054 3.946 19 C 0.070 3.930 20 N -0.502 5.502 21 C 0.097 3.903 22 C -0.183 4.183 23 C -0.101 4.101 24 C -0.155 4.155 25 C -0.102 4.102 26 C -0.156 4.156 27 C 0.061 3.939 28 C 0.057 3.943 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.001 0.999 33 H -0.009 1.009 34 H 0.258 0.742 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.028 0.972 42 H 0.034 0.966 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.126 0.874 51 H 0.055 0.945 52 H 0.096 0.904 53 H 0.096 0.904 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.582 8.628 29.092 31.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.260 5.260 14 C -0.117 4.117 15 C -0.061 4.061 16 C -0.057 4.057 17 N -0.265 5.265 18 C -0.075 4.075 19 C -0.055 4.055 20 N -0.217 5.217 21 C 0.000 4.000 22 C -0.203 4.203 23 C -0.119 4.119 24 C -0.174 4.174 25 C -0.120 4.120 26 C -0.176 4.176 27 C -0.066 4.066 28 C -0.072 4.072 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.019 0.981 33 H 0.009 0.991 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.152 0.848 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.144 0.856 51 H 0.073 0.927 52 H 0.114 0.886 53 H 0.114 0.886 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.014 8.479 28.821 30.638 hybrid contribution 0.373 -0.240 -0.746 0.868 sum -5.640 8.239 28.075 29.798 Atomic orbital electron populations 1.22373 0.97270 1.01656 1.01911 1.21599 0.92001 0.97139 0.90465 0.91978 1.19089 0.95167 0.94619 0.91473 1.21440 0.93269 1.32407 1.06623 0.92573 1.25849 1.02782 0.95730 0.95792 1.70085 1.37058 1.37905 1.13007 0.85646 0.80741 0.78322 0.77134 1.19834 1.21329 1.19577 1.61945 1.60103 1.02445 1.01500 1.22324 0.97427 0.90151 1.01825 1.21967 0.97766 0.97570 0.88782 1.21927 0.97456 0.98003 0.88363 1.62153 1.59699 1.02451 1.02233 1.22239 0.97859 0.89311 0.98045 1.22238 0.98396 0.97706 0.87208 1.59270 1.57238 1.03490 1.01728 1.19159 0.95216 0.93495 0.92149 1.21522 1.00962 1.01732 0.96119 1.21317 0.98668 0.94831 0.97111 1.21400 1.00485 0.95340 1.00187 1.21307 0.97134 1.00598 0.92962 1.20987 1.03245 0.93504 0.99867 1.22326 0.98802 0.87166 0.98350 1.22219 0.98019 0.98239 0.88675 0.92956 0.92540 0.91626 0.98108 0.99065 0.93308 0.93489 0.90756 0.95078 0.91591 0.94068 0.90203 0.95391 0.94773 0.89416 0.93422 0.88852 0.84812 0.84193 0.84224 0.84129 0.85635 0.92677 0.88565 0.88620 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 8.50 71.98 0.61 -5.19 16 2 C 0.10 3.91 2.29 44.91 0.10 4.01 16 3 H 0.06 2.57 8.03 -2.39 -0.02 2.55 16 4 C 0.03 1.75 4.26 29.85 0.13 1.88 16 5 C -0.50 -28.38 8.84 25.60 0.23 -28.16 16 6 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 9 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.54 -19.79 4.47 -897.06 -4.01 -23.80 16 14 C 0.03 1.07 8.63 127.69 1.10 2.17 16 15 C 0.07 1.96 4.33 86.31 0.37 2.33 16 16 C 0.07 1.82 4.89 86.31 0.42 2.24 16 17 N -0.54 -11.96 4.71 -895.70 -4.22 -16.17 16 18 C 0.05 1.15 5.41 86.31 0.47 1.62 16 19 C 0.07 1.32 5.38 86.31 0.46 1.78 16 20 N -0.50 -9.66 4.75 -694.78 -3.30 -12.96 16 21 C 0.10 1.81 5.64 38.21 0.22 2.02 16 22 C -0.18 -2.97 8.82 22.40 0.20 -2.77 16 23 C -0.10 -1.39 10.04 22.25 0.22 -1.16 16 24 C -0.16 -2.03 10.04 22.29 0.22 -1.81 16 25 C -0.10 -1.44 10.04 22.25 0.22 -1.21 16 26 C -0.16 -2.67 9.19 22.40 0.21 -2.47 16 27 C 0.06 1.03 4.29 86.31 0.37 1.40 16 28 C 0.06 1.08 5.61 86.31 0.48 1.56 16 29 H 0.05 1.75 6.38 -2.39 -0.02 1.74 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.87 6.75 -2.38 -0.02 1.86 16 32 H 0.00 0.04 6.17 -2.39 -0.01 0.02 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.05 1.97 6.22 -2.39 -0.01 1.95 16 36 H 0.07 2.22 6.30 -2.39 -0.02 2.21 16 37 H 0.03 0.98 6.28 -2.39 -0.01 0.97 16 38 H 0.07 1.92 6.35 -2.39 -0.02 1.91 16 39 H 0.04 1.15 6.94 -2.39 -0.02 1.14 16 40 H 0.08 1.98 6.36 -2.39 -0.02 1.97 16 41 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 42 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 1.87 6.34 -2.39 -0.02 1.86 16 44 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.09 1.56 6.82 -2.39 -0.02 1.54 16 46 H 0.13 1.85 5.81 -2.91 -0.02 1.83 16 47 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 49 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 50 H 0.13 1.99 7.19 -2.91 -0.02 1.97 16 51 H 0.06 0.94 7.57 -2.39 -0.02 0.92 16 52 H 0.10 1.40 7.18 -2.39 -0.02 1.38 16 53 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 54 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -65.81 403.55 -1.85 -67.66 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.86 Total: 16.51 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 6.50 Total: -21.60 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -11.24 Total: -110.32 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -65.81 -1.85 -67.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351264689.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.329 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds