Wall clock time and date at job start Tue Mar 31 2020 16:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46905 * 2 1 4 4 C 1.46901 * 111.00447 * 288.00324 * 3 2 1 5 5 C 1.50703 * 109.47190 * 160.36104 * 4 3 2 6 6 H 1.07997 * 119.99912 * 4.65863 * 5 4 3 7 7 C 1.37870 * 119.99639 * 184.65865 * 5 4 3 8 8 N 1.31518 * 120.00488 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99660 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47292 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46548 * 120.00057 * 9 7 5 12 12 H 1.48491 * 109.47338 * 239.99735 * 9 7 5 13 13 C 1.46902 * 110.99708 * 164.04616 * 3 2 1 14 14 C 1.52993 * 109.47120 * 293.95585 * 13 3 2 15 15 C 1.53001 * 109.46981 * 179.97438 * 14 13 3 16 16 N 1.46899 * 109.47345 * 180.02562 * 15 14 13 17 17 C 1.46953 * 111.00120 * 293.80426 * 16 15 14 18 18 C 1.53048 * 109.36615 * 176.81136 * 17 16 15 19 19 N 1.46956 * 109.36777 * 58.39619 * 18 17 16 20 20 C 1.39669 * 111.00468 * 176.81410 * 19 18 17 21 21 C 1.38913 * 120.07774 * 123.52173 * 20 19 18 22 22 C 1.38101 * 119.92366 * 179.77023 * 21 20 19 23 23 C 1.38294 * 120.07820 * 0.51036 * 22 21 20 24 24 C 1.38282 * 120.14334 * 359.74195 * 23 22 21 25 25 C 1.38103 * 120.08128 * 0.02562 * 24 23 22 26 26 C 1.46962 * 110.88099 * 300.68318 * 19 18 17 27 27 C 1.46956 * 111.00346 * 169.99938 * 16 15 14 28 28 H 1.08996 * 109.47631 * 59.46283 * 1 2 3 29 29 H 1.09006 * 109.47304 * 179.46037 * 1 2 3 30 30 H 1.08996 * 109.47115 * 299.45668 * 1 2 3 31 31 H 1.09003 * 109.46804 * 240.00483 * 2 1 3 32 32 H 1.08991 * 109.47118 * 120.00516 * 2 1 3 33 33 H 1.09000 * 109.47060 * 280.36275 * 4 3 2 34 34 H 1.08996 * 109.46900 * 40.36012 * 4 3 2 35 35 H 0.96997 * 119.99647 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.46952 * 53.96064 * 13 3 2 37 37 H 1.09008 * 109.46870 * 173.95608 * 13 3 2 38 38 H 1.08998 * 109.47600 * 300.00083 * 14 13 3 39 39 H 1.09004 * 109.47360 * 60.00730 * 14 13 3 40 40 H 1.08996 * 109.47214 * 299.99937 * 15 14 13 41 41 H 1.08995 * 109.47256 * 60.00131 * 15 14 13 42 42 H 1.09002 * 109.48543 * 296.77335 * 17 16 15 43 43 H 1.08995 * 109.49559 * 56.84089 * 17 16 15 44 44 H 1.09000 * 109.48946 * 298.42963 * 18 17 16 45 45 H 1.09000 * 109.49223 * 178.36482 * 18 17 16 46 46 H 1.07997 * 120.03488 * 0.02562 * 21 20 19 47 47 H 1.08003 * 119.96495 * 180.25130 * 22 21 20 48 48 H 1.07999 * 119.92706 * 179.76788 * 23 22 21 49 49 H 1.08006 * 119.95947 * 180.02562 * 24 23 22 50 50 H 1.07999 * 120.03849 * 179.97438 * 25 24 23 51 51 H 1.09002 * 109.48708 * 299.35287 * 26 19 18 52 52 H 1.08997 * 109.48786 * 179.28793 * 26 19 18 53 53 H 1.09000 * 109.48681 * 303.16027 * 27 16 15 54 54 H 1.09000 * 109.48650 * 63.21993 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7955 2.0227 -1.3043 5 6 1.8468 3.5206 -1.1465 6 1 2.1020 3.9545 -0.1910 7 6 1.5679 4.3369 -2.2220 8 7 1.2576 3.8085 -3.3857 9 14 1.6308 6.1936 -2.0263 10 1 2.0023 6.5318 -0.6289 11 1 2.6428 6.7553 -2.9568 12 1 0.2982 6.7697 -2.3379 13 6 3.4383 1.4418 0.3770 14 6 3.5972 0.9995 1.8329 15 6 5.0749 1.0580 2.2253 16 7 5.2276 0.6327 3.6231 17 6 4.5882 1.5891 4.5374 18 6 4.7000 1.0710 5.9732 19 7 6.1171 0.8862 6.3157 20 6 6.2623 0.4818 7.6446 21 6 6.9379 -0.6944 7.9446 22 6 7.0838 -1.0887 9.2600 23 6 6.5491 -0.3198 10.2775 24 6 5.8715 0.8489 9.9821 25 6 5.7261 1.2517 8.6691 26 6 6.7565 -0.0703 5.4013 27 6 6.6447 0.4479 3.9656 28 1 -0.3634 0.5221 -0.8851 29 1 -0.3634 -1.0277 -0.0097 30 1 -0.3633 0.5054 0.8948 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.5697 1.7041 -2.0023 34 1 0.8179 1.7310 -1.6880 35 1 1.0611 4.3829 -4.1422 36 1 4.0128 0.7781 -0.2692 37 1 3.8033 2.4629 0.2655 38 1 3.0228 1.6632 2.4791 39 1 3.2324 -0.0216 1.9444 40 1 5.6490 0.3940 1.5792 41 1 5.4403 2.0788 2.1138 42 1 5.0867 2.5554 4.4597 43 1 3.5370 1.6994 4.2715 44 1 4.1782 0.1177 6.0575 45 1 4.2520 1.7927 6.6562 46 1 7.3521 -1.2975 7.1502 47 1 7.6124 -2.0010 9.4942 48 1 6.6614 -0.6324 11.3052 49 1 5.4554 1.4474 10.7791 50 1 5.1963 2.1643 8.4391 51 1 6.2580 -1.0365 5.4790 52 1 7.8077 -0.1806 5.6674 53 1 7.0927 -0.2738 3.2826 54 1 7.1665 1.4012 3.8813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352016357.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:34 Heat of formation + Delta-G solvation = 26.368559 kcal Electronic energy + Delta-G solvation = -28175.235066 eV Core-core repulsion = 24532.047000 eV Total energy + Delta-G solvation = -3643.188067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35584 -39.50703 -38.71567 -36.66752 -34.81090 -33.38163 -32.59507 -31.47336 -31.39400 -30.45531 -28.62552 -27.13271 -25.33159 -24.88212 -24.26097 -23.02154 -22.54633 -22.01187 -21.07888 -20.75455 -18.69446 -18.55637 -16.98383 -16.83814 -16.65747 -16.46339 -16.35056 -15.96849 -15.77504 -15.61352 -15.50181 -15.17598 -14.86275 -14.78677 -14.47533 -14.35653 -14.27412 -13.81194 -13.48785 -13.28395 -12.97493 -12.95758 -12.84162 -12.68992 -12.58527 -12.49959 -12.45571 -12.27873 -12.20522 -12.08518 -11.98727 -11.81441 -11.68882 -11.53800 -11.29328 -11.06090 -10.66210 -10.59009 -9.83611 -9.37253 -8.97244 -8.79148 -8.19009 -6.28515 0.47297 0.50862 1.39432 1.40181 1.53639 2.40059 2.62741 2.78641 2.98818 3.12227 3.36932 3.75664 3.88868 3.96881 4.04570 4.10190 4.14957 4.22973 4.24182 4.32081 4.32585 4.39160 4.43382 4.47115 4.53119 4.59245 4.60498 4.63319 4.69567 4.74732 4.77005 4.78459 4.85010 4.88138 4.92384 4.99978 5.03989 5.04745 5.14632 5.22377 5.26867 5.32204 5.33295 5.40807 5.43336 5.53397 5.68135 5.68364 5.84001 5.95968 6.03114 6.09445 6.11232 6.36791 6.45075 6.68899 6.87651 7.40697 8.91628 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002020 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.223412 B =13857.273056 C =14443.840736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 N -0.543 5.543 4 C 0.205 3.795 5 C -0.516 4.516 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.068 3.932 14 C -0.092 4.092 15 C 0.066 3.934 16 N -0.541 5.541 17 C 0.053 3.947 18 C 0.070 3.930 19 N -0.501 5.501 20 C 0.097 3.903 21 C -0.182 4.182 22 C -0.101 4.101 23 C -0.155 4.155 24 C -0.102 4.102 25 C -0.156 4.156 26 C 0.059 3.941 27 C 0.055 3.945 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.090 0.910 33 H -0.044 1.044 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.134 0.866 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.125 0.875 51 H 0.054 0.946 52 H 0.096 0.904 53 H 0.097 0.903 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 -10.943 25.840 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 N -0.268 5.268 4 C 0.079 3.921 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.060 4.060 14 C -0.130 4.130 15 C -0.062 4.062 16 N -0.266 5.266 17 C -0.075 4.075 18 C -0.056 4.056 19 N -0.217 5.217 20 C 0.000 4.000 21 C -0.203 4.203 22 C -0.119 4.119 23 C -0.174 4.174 24 C -0.120 4.120 25 C -0.176 4.176 26 C -0.068 4.068 27 C -0.073 4.073 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.109 0.891 33 H -0.026 1.026 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.152 0.848 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.143 0.857 51 H 0.073 0.927 52 H 0.115 0.885 53 H 0.115 0.885 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.710 -10.616 25.922 30.360 hybrid contribution 0.410 0.806 -1.382 1.651 sum 12.119 -9.809 24.540 29.074 Atomic orbital electron populations 1.21705 0.94924 1.01561 1.01334 1.22168 0.96550 0.89329 1.00050 1.62087 1.17501 1.16108 1.31087 1.19429 0.93984 0.93923 0.84774 1.21487 1.45748 0.91965 0.96225 0.92255 1.25901 0.95049 1.04040 0.94835 1.70092 1.48697 1.36969 1.01867 0.85373 0.77798 0.79262 0.78420 1.18843 1.20464 1.20376 1.21889 0.88327 0.99938 0.95891 1.21425 0.95617 1.01822 0.94162 1.21957 0.96761 0.98824 0.88699 1.62178 1.14718 1.47098 1.02622 1.22233 1.00437 0.93428 0.91378 1.22236 0.86144 1.01141 0.96069 1.59277 1.15307 1.45921 1.01187 1.19163 0.98228 0.93377 0.89279 1.21521 1.04567 0.95918 0.98306 1.21321 0.98401 1.00045 0.92156 1.21403 0.99891 0.95855 1.00254 1.21307 0.97850 0.96825 0.96032 1.20990 1.03598 1.00541 0.92507 1.22337 1.00180 0.93512 0.90725 1.22236 0.88253 1.00717 0.96080 0.95175 0.90405 0.92296 0.96917 0.89138 1.02590 0.96962 0.92783 0.96428 0.92771 0.91984 0.90925 0.90042 0.95304 0.94731 0.89445 0.93492 0.88951 0.84784 0.84164 0.84211 0.84147 0.85680 0.92741 0.88544 0.88519 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.99 71.98 0.72 -3.96 16 2 C 0.05 1.69 5.55 86.30 0.48 2.17 16 3 N -0.54 -23.61 4.38 -900.80 -3.95 -27.55 16 4 C 0.21 11.13 4.59 85.56 0.39 11.52 16 5 C -0.52 -29.75 8.61 25.60 0.22 -29.53 16 6 H 0.06 3.38 7.66 -2.91 -0.02 3.36 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.07 2.58 4.78 86.30 0.41 2.99 16 14 C -0.09 -2.66 5.11 30.59 0.16 -2.50 16 15 C 0.07 1.61 4.96 86.30 0.43 2.04 16 16 N -0.54 -11.86 4.71 -895.76 -4.22 -16.08 16 17 C 0.05 1.16 5.41 86.31 0.47 1.63 16 18 C 0.07 1.34 5.38 86.31 0.46 1.81 16 19 N -0.50 -9.71 4.75 -694.78 -3.30 -13.01 16 20 C 0.10 1.82 5.64 38.22 0.22 2.04 16 21 C -0.18 -2.98 8.82 22.40 0.20 -2.78 16 22 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 23 C -0.16 -2.05 10.04 22.29 0.22 -1.83 16 24 C -0.10 -1.46 10.04 22.25 0.22 -1.24 16 25 C -0.16 -2.72 9.19 22.40 0.21 -2.51 16 26 C 0.06 1.00 4.29 86.31 0.37 1.37 16 27 C 0.06 1.02 5.61 86.31 0.48 1.50 16 28 H 0.03 1.19 6.52 -2.39 -0.02 1.17 16 29 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 32 H 0.09 2.74 5.94 -2.39 -0.01 2.72 16 33 H -0.04 -2.57 8.00 -2.39 -0.02 -2.59 16 34 H 0.01 0.72 6.24 -2.39 -0.01 0.70 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 37 H 0.05 2.29 7.32 -2.38 -0.02 2.27 16 38 H 0.06 1.88 6.50 -2.39 -0.02 1.87 16 39 H 0.07 2.00 6.28 -2.39 -0.01 1.99 16 40 H 0.08 1.87 8.02 -2.39 -0.02 1.85 16 41 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 42 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 1.96 6.34 -2.39 -0.02 1.95 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 1.60 6.82 -2.39 -0.02 1.59 16 46 H 0.13 1.85 5.81 -2.91 -0.02 1.83 16 47 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 48 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 49 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 50 H 0.13 2.03 7.19 -2.91 -0.02 2.01 16 51 H 0.05 0.93 7.57 -2.39 -0.02 0.92 16 52 H 0.10 1.38 7.18 -2.39 -0.02 1.36 16 53 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 54 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -66.56 410.44 -1.96 -68.52 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.85 Total: 15.91 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 6.35 Total: -18.04 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -11.18 Total: -113.40 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.56 -1.96 -68.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352016357.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.888 kcal (2) G-P(sol) polarization free energy of solvation -66.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds