Wall clock time and date at job start Tue Mar 31 2020 16:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48501 * 109.46890 * 269.99819 * 3 2 1 5 5 H 1.48500 * 109.47118 * 29.99715 * 3 2 1 6 6 H 1.48495 * 109.47429 * 150.00134 * 3 2 1 7 7 C 1.38800 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00661 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00166 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46941 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00295 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99442 * 179.97438 * 11 10 9 14 14 C 1.40124 * 119.99506 * 185.59916 * 13 11 10 15 15 C 1.38956 * 120.50711 * 24.58009 * 14 13 11 16 16 C 1.38797 * 118.41985 * 179.97438 * 15 14 13 17 17 Br 1.89110 * 120.33795 * 179.97438 * 16 15 14 18 18 C 1.38160 * 119.33160 * 0.02562 * 16 15 14 19 19 N 1.31999 * 120.95800 * 359.72077 * 18 16 15 20 20 C 1.32150 * 121.72290 * 0.56773 * 19 18 16 21 21 O 1.35761 * 119.71219 * 179.70985 * 20 19 18 22 22 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46766 * 60.00274 * 10 9 7 24 24 H 1.08997 * 109.47290 * 300.00223 * 10 9 7 25 25 H 0.96998 * 120.00464 * 5.59634 * 13 11 10 26 26 H 1.08001 * 120.78873 * 359.96098 * 15 14 13 27 27 H 1.07998 * 119.52377 * 180.02562 * 18 16 15 28 28 H 0.96698 * 113.99788 * 269.72852 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0048 12 8 0.7909 -5.5023 0.0050 13 7 2.8442 -6.3431 0.0054 14 6 2.3571 -7.6518 -0.1113 15 6 1.1315 -7.8968 -0.7185 16 6 0.6910 -9.2098 -0.8113 17 35 -0.9690 -9.6050 -1.6264 18 6 1.4771 -10.2250 -0.3012 19 7 2.6399 -9.9636 0.2663 20 6 3.0951 -8.7283 0.3808 21 8 4.2942 -8.5057 0.9771 22 1 -0.4850 0.8400 -0.0004 23 1 3.1244 -3.7306 0.8928 24 1 3.1245 -3.7322 -0.8871 25 1 3.7979 -6.1860 0.0864 26 1 0.5357 -7.0849 -1.1087 27 1 1.1376 -11.2478 -0.3721 28 1 4.2380 -8.3610 1.9316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357416489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:24 Heat of formation + Delta-G solvation = -57.984652 kcal Electronic energy + Delta-G solvation = -17244.317185 eV Core-core repulsion = 14046.479490 eV Total energy + Delta-G solvation = -3197.837696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27453 -40.52293 -38.26114 -36.27022 -34.59182 -33.89511 -32.45719 -30.58793 -29.58153 -27.67408 -25.34171 -24.08549 -21.98831 -20.22138 -19.87973 -18.98999 -18.35665 -17.54001 -17.13206 -16.88199 -16.59789 -16.15462 -15.84952 -15.13869 -14.70187 -14.60936 -14.46125 -13.95617 -13.70984 -13.17475 -12.93655 -12.90456 -12.64464 -12.43856 -12.24538 -11.76999 -11.53623 -11.38943 -11.15000 -10.68460 -10.32829 -10.30522 -9.40032 -8.68060 -8.35958 -6.13782 -0.48764 -0.15972 0.38007 1.16397 1.35002 1.42582 1.42862 1.54779 1.92650 2.20764 2.25427 2.54359 2.99063 3.21573 3.43167 3.56968 3.67589 3.90965 3.97999 4.23492 4.46138 4.47328 4.74388 4.86324 5.29024 5.42231 6.11238 6.19245 6.36543 6.61140 6.87274 7.06313 8.72914 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.003042 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.186347 B = 9201.901813 C =10548.597638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.142 6.142 10 C -0.130 4.130 11 C 0.538 3.462 12 O -0.531 6.531 13 N -0.644 5.644 14 C 0.093 3.907 15 C -0.067 4.067 16 C -0.137 4.137 17 Br -0.018 7.018 18 C 0.138 3.862 19 N -0.483 5.483 20 C 0.305 3.695 21 O -0.475 6.475 22 H 0.271 0.729 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.435 0.565 26 H 0.150 0.850 27 H 0.200 0.800 28 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -21.472 -0.517 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.085 5.915 10 C -0.281 4.281 11 C 0.326 3.674 12 O -0.406 6.406 13 N -0.291 5.291 14 C -0.008 4.008 15 C -0.097 4.097 16 C -0.220 4.220 17 Br 0.067 6.933 18 C -0.021 4.021 19 N -0.201 5.201 20 C 0.122 3.878 21 O -0.285 6.285 22 H 0.080 0.920 23 H 0.138 0.862 24 H 0.136 0.864 25 H 0.275 0.725 26 H 0.168 0.832 27 H 0.217 0.783 28 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 4.121 -22.466 -1.014 22.863 hybrid contribution 1.576 2.274 0.323 2.785 sum 5.697 -20.192 -0.690 20.992 Atomic orbital electron populations 1.70167 1.07920 1.28631 1.47964 1.26096 0.95937 1.03278 0.93783 0.84976 0.78264 0.76177 0.78731 1.19455 1.20485 1.18112 1.23205 0.95457 0.91876 1.58845 0.89644 1.85586 1.09708 0.99062 1.97096 1.23371 1.04173 0.92824 1.07754 1.20385 0.86081 0.86610 0.74348 1.90697 1.16952 1.85459 1.47491 1.43235 1.12012 1.01987 1.71915 1.18869 0.95216 0.85577 1.01131 1.21803 0.95655 0.96919 0.95284 1.22909 0.96871 0.95840 1.06345 1.96775 1.22807 1.94341 1.79369 1.22935 0.87151 1.00094 0.91940 1.67434 1.14164 1.21319 1.17210 1.18852 0.86823 0.86477 0.95604 1.84741 1.22902 1.92099 1.28797 0.92001 0.86159 0.86395 0.72452 0.83222 0.78340 0.71431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.32 13.22 21.65 0.29 -54.04 15 2 C 0.01 0.77 5.49 84.86 0.47 1.24 15 3 Si 1.00 42.21 29.55 68.60 2.03 44.24 15 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.55 -29.68 9.50 67.95 0.65 -29.04 15 8 H 0.09 4.28 7.80 -2.91 -0.02 4.25 15 9 S -0.14 -7.35 20.57 -56.49 -1.16 -8.52 15 10 C -0.13 -4.59 6.16 71.24 0.44 -4.15 15 11 C 0.54 17.59 7.67 87.66 0.67 18.26 15 12 O -0.53 -21.68 13.07 -3.07 -0.04 -21.72 15 13 N -0.64 -15.09 5.29 -302.81 -1.60 -16.70 15 14 C 0.09 2.26 6.47 38.29 0.25 2.51 15 15 C -0.07 -1.83 8.59 22.58 0.19 -1.63 15 16 C -0.14 -3.11 6.24 22.39 0.14 -2.97 15 17 Br -0.02 -0.37 33.73 -20.37 -0.69 -1.05 15 18 C 0.14 2.66 10.93 84.65 0.92 3.58 15 19 N -0.48 -10.41 10.38 -308.39 -3.20 -13.61 15 20 C 0.31 6.45 7.77 84.95 0.66 7.11 15 21 O -0.47 -7.46 12.99 -90.87 -1.18 -8.64 15 22 H 0.27 15.07 8.31 -92.71 -0.77 14.29 15 23 H 0.12 3.68 8.14 -2.40 -0.02 3.66 15 24 H 0.12 3.70 8.14 -2.40 -0.02 3.68 15 25 H 0.43 7.21 8.36 -92.71 -0.78 6.43 15 26 H 0.15 4.89 5.88 -2.91 -0.02 4.88 15 27 H 0.20 2.52 8.06 -2.91 -0.02 2.50 15 28 H 0.42 2.86 9.06 -74.06 -0.67 2.19 15 Total: -1.00 -72.56 292.71 -1.37 -73.93 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.20 Total: 11.19 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 4.39 Total: -5.08 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -4.52 Total: -84.34 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.22 Total: -30.36 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.16 Total: -8.52 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.05 kcal Total: -72.56 -1.37 -73.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357416489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.947 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds