Wall clock time and date at job start Tue Mar 31 2020 16:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 H 1.08994 * 109.46918 * 305.89684 * 3 2 1 5 5 C 1.50696 * 109.47178 * 185.89280 * 3 2 1 6 6 H 1.07996 * 120.00338 * 243.26292 * 5 3 2 7 7 C 1.37880 * 119.99439 * 63.26637 * 5 3 2 8 8 N 1.31522 * 119.99714 * 195.95911 * 7 5 3 9 9 Si 1.86796 * 120.00235 * 15.95697 * 7 5 3 10 10 H 1.48503 * 109.47311 * 93.33557 * 9 7 5 11 11 H 1.48503 * 109.47001 * 213.33150 * 9 7 5 12 12 H 1.48501 * 109.47303 * 333.33233 * 9 7 5 13 13 N 1.46902 * 109.46872 * 65.89659 * 3 2 1 14 14 C 1.46906 * 110.99767 * 258.88933 * 13 3 2 15 15 C 1.53003 * 109.46993 * 175.54641 * 14 13 3 16 16 N 1.46897 * 109.46910 * 179.97438 * 15 14 13 17 17 C 1.46954 * 110.99686 * 189.99959 * 16 15 14 18 18 C 1.53059 * 109.36626 * 183.18882 * 17 16 15 19 19 N 1.46955 * 109.36027 * 301.60104 * 18 17 16 20 20 C 1.46900 * 110.99965 * 183.18809 * 19 18 17 21 21 C 1.50700 * 109.47493 * 169.99690 * 20 19 18 22 22 C 1.38235 * 119.99802 * 89.99902 * 21 20 19 23 23 C 1.38229 * 120.00047 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99977 * 359.97438 * 23 22 21 25 25 C 1.38241 * 119.99915 * 359.97438 * 24 23 22 26 26 C 1.38226 * 119.99807 * 269.97863 * 21 20 19 27 27 C 1.46954 * 110.88348 * 59.31915 * 19 18 17 28 28 C 1.46957 * 111.00323 * 313.79663 * 16 15 14 29 29 H 1.08999 * 109.47156 * 55.93087 * 1 2 3 30 30 H 1.08994 * 109.47264 * 175.93588 * 1 2 3 31 31 H 1.09007 * 109.47426 * 295.93665 * 1 2 3 32 32 H 1.08990 * 109.47135 * 239.99916 * 2 1 3 33 33 H 1.09003 * 109.46779 * 119.99755 * 2 1 3 34 34 H 0.96999 * 119.99889 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00505 * 22.84251 * 13 3 2 36 36 H 1.08995 * 109.47352 * 55.54541 * 14 13 3 37 37 H 1.09000 * 109.47105 * 295.53847 * 14 13 3 38 38 H 1.09000 * 109.46778 * 59.99532 * 15 14 13 39 39 H 1.09003 * 109.47172 * 299.99936 * 15 14 13 40 40 H 1.09005 * 109.49311 * 63.22129 * 17 16 15 41 41 H 1.09003 * 109.49356 * 303.15264 * 17 16 15 42 42 H 1.08997 * 109.48954 * 181.62621 * 18 17 16 43 43 H 1.09002 * 109.48623 * 61.56477 * 18 17 16 44 44 H 1.09000 * 109.47421 * 49.99132 * 20 19 18 45 45 H 1.09003 * 109.47020 * 290.00402 * 20 19 18 46 46 H 1.08007 * 120.00152 * 359.97322 * 22 21 20 47 47 H 1.07996 * 120.00165 * 180.02562 * 23 22 21 48 48 H 1.07995 * 120.00497 * 179.72552 * 24 23 22 49 49 H 1.08003 * 120.00254 * 179.97438 * 25 24 23 50 50 H 1.08002 * 120.00369 * 359.97438 * 26 21 20 51 51 H 1.08996 * 109.49075 * 60.64678 * 27 19 18 52 52 H 1.08997 * 109.48760 * 180.71690 * 27 19 18 53 53 H 1.09007 * 109.48456 * 296.78455 * 28 16 15 54 54 H 1.09003 * 109.48440 * 56.84166 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 -0.8324 5 6 3.5399 1.4450 -0.1459 6 1 4.1590 1.8378 0.6471 7 6 4.1218 0.9458 -1.2918 8 7 5.4043 0.6543 -1.3048 9 14 3.0888 0.6834 -2.8259 10 1 3.1722 1.8876 -3.6909 11 1 3.5983 -0.4966 -3.5698 12 1 1.6748 0.4505 -2.4367 13 7 1.6700 2.0927 1.2643 14 6 0.4962 2.9581 1.0873 15 6 0.0745 3.5290 2.4427 16 7 -1.0989 4.3949 2.2657 17 6 -1.3897 5.1456 3.4951 18 6 -2.6619 5.9729 3.2957 19 7 -2.4774 6.8835 2.1571 20 6 -3.6507 7.7495 1.9800 21 6 -3.3339 8.8253 0.9734 22 6 -3.5793 8.6090 -0.3697 23 6 -3.2892 9.5959 -1.2930 24 6 -2.7542 10.7994 -0.8732 25 6 -2.5097 11.0161 0.4701 26 6 -2.7983 10.0284 1.3932 27 6 -2.1866 6.1328 0.9277 28 6 -0.9145 5.3056 1.1271 29 1 -0.3633 0.5757 -0.8513 30 1 -0.3633 -1.0250 -0.0728 31 1 -0.3634 0.4495 0.9242 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8138 0.3035 -2.1111 35 1 1.5093 1.4093 1.9889 36 1 -0.3241 2.3764 0.6670 37 1 0.7460 3.7754 0.4108 38 1 0.8949 4.1107 2.8630 39 1 -0.1754 2.7118 3.1194 40 1 -0.5556 5.8100 3.7214 41 1 -1.5347 4.4491 4.3209 42 1 -2.8634 6.5528 4.1963 43 1 -3.5013 5.3068 3.0963 44 1 -3.9103 8.2092 2.9337 45 1 -4.4912 7.1541 1.6233 46 1 -3.9977 7.6688 -0.6977 47 1 -3.4813 9.4271 -2.3422 48 1 -2.5234 11.5689 -1.5949 49 1 -2.0913 11.9562 0.7981 50 1 -2.6072 10.1977 2.4426 51 1 -3.0206 5.4685 0.7014 52 1 -2.0416 6.8293 0.1020 53 1 -0.0750 5.9717 1.3266 54 1 -0.7129 4.7255 0.2265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390911377.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:28 Heat of formation + Delta-G solvation = 23.608623 kcal Electronic energy + Delta-G solvation = -28599.517703 eV Core-core repulsion = 24956.209956 eV Total energy + Delta-G solvation = -3643.307747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.80516 -39.79156 -38.56303 -36.73360 -34.52302 -33.37486 -32.30822 -32.02928 -31.62306 -30.19684 -28.77029 -26.81001 -25.27385 -24.59913 -24.05194 -23.34896 -22.28376 -21.90035 -21.63673 -20.66331 -18.78390 -17.69170 -17.49016 -16.84956 -16.67078 -16.46601 -16.21711 -16.05204 -15.74753 -15.52836 -15.46183 -15.15915 -14.99572 -14.74330 -14.46174 -14.25493 -14.03289 -13.75725 -13.50389 -13.49105 -13.28690 -13.09850 -12.96342 -12.79192 -12.61885 -12.37886 -12.30101 -12.26457 -12.20536 -12.08204 -11.81543 -11.69473 -11.54999 -11.46371 -11.33485 -11.20628 -10.53580 -9.77968 -9.69446 -9.40983 -9.22039 -8.94461 -8.26999 -6.22911 0.44158 0.53691 1.32951 1.37276 1.46198 2.36431 2.72367 2.80872 3.06127 3.19013 3.66859 3.79425 3.89814 3.98252 3.98764 4.15577 4.19238 4.21363 4.26770 4.30521 4.33450 4.38415 4.42298 4.43974 4.47778 4.51541 4.56228 4.62960 4.65236 4.72512 4.80734 4.81044 4.84265 4.90446 4.93234 4.99642 5.04072 5.09308 5.12163 5.14487 5.18897 5.19180 5.26831 5.52118 5.58649 5.65668 5.71128 5.74709 5.89757 5.97105 6.06657 6.12528 6.15533 6.18260 6.72241 6.82491 6.83449 7.39925 8.90674 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.002453 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.546987 B =11412.579784 C =12543.679990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.019 0.981 5 C -0.507 4.507 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.927 3.073 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.226 1.226 13 N -0.685 5.685 14 C 0.061 3.939 15 C 0.069 3.931 16 N -0.538 5.538 17 C 0.056 3.944 18 C 0.064 3.936 19 N -0.544 5.544 20 C 0.098 3.902 21 C -0.089 4.089 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.111 4.111 27 C 0.065 3.935 28 C 0.053 3.947 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.336 0.664 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.084 0.916 40 H 0.031 0.969 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.124 0.876 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.130 0.870 51 H 0.042 0.958 52 H 0.079 0.921 53 H 0.024 0.976 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.205 16.765 6.444 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C 0.092 3.908 4 H 0.037 0.963 5 C -0.546 4.546 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.751 3.249 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.149 1.149 13 N -0.317 5.317 14 C -0.068 4.068 15 C -0.059 4.059 16 N -0.263 5.263 17 C -0.072 4.072 18 C -0.064 4.064 19 N -0.269 5.269 20 C -0.029 4.029 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.129 4.129 27 C -0.063 4.063 28 C -0.075 4.075 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.142 0.858 47 H 0.152 0.848 48 H 0.154 0.846 49 H 0.154 0.846 50 H 0.148 0.852 51 H 0.060 0.940 52 H 0.098 0.902 53 H 0.043 0.957 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.630 17.203 6.297 30.696 hybrid contribution 0.032 -0.850 -1.043 1.345 sum -24.598 16.353 5.254 30.002 Atomic orbital electron populations 1.21845 0.94963 1.01853 1.01467 1.22453 0.95799 0.99291 1.01114 1.19310 0.93245 0.89980 0.88282 0.96340 1.21303 0.91897 1.38927 1.02442 0.95159 1.25767 0.95910 0.94667 1.02048 1.70134 1.13833 1.45439 1.29250 0.86188 0.81770 0.77532 0.79441 1.20726 1.21259 1.14858 1.60415 1.36449 1.26065 1.08743 1.22115 0.91367 0.96379 0.96942 1.21941 0.90482 0.96637 0.96861 1.62281 1.37338 1.21569 1.05112 1.22226 0.97158 0.95744 0.92029 1.22169 0.96285 0.93790 0.94164 1.62159 1.38117 1.21927 1.04727 1.21031 0.90740 0.92494 0.98624 1.19879 0.99443 0.95336 0.94241 1.21250 1.00679 0.99487 0.92945 1.21398 0.99413 0.93894 1.00302 1.21455 0.99134 0.97860 0.96464 1.21446 1.00078 0.99905 0.93498 1.21222 0.98140 0.93165 1.00416 1.22115 0.96272 0.95107 0.92796 1.22215 0.96812 0.93736 0.94758 0.93553 0.91804 0.91960 0.93692 0.92642 0.92750 0.84633 0.94082 0.92943 0.95281 0.89736 0.95062 0.88859 0.88339 0.93814 0.88577 0.93475 0.85800 0.84802 0.84592 0.84551 0.85210 0.94023 0.90240 0.95719 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.74 71.98 0.63 -3.90 16 2 C -0.15 -5.98 4.49 30.60 0.14 -5.85 16 3 C 0.20 9.27 1.73 44.17 0.08 9.35 16 4 H 0.02 0.88 6.36 -2.39 -0.02 0.86 16 5 C -0.51 -29.51 9.29 25.60 0.24 -29.27 16 6 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 7 C 0.01 0.77 5.31 84.65 0.45 1.22 16 8 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 9 Si 0.93 43.96 25.75 68.60 1.77 45.73 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.23 -9.58 5.48 99.48 0.55 -9.04 16 13 N -0.69 -27.33 6.10 -495.44 -3.02 -30.35 16 14 C 0.06 2.01 4.32 86.30 0.37 2.38 16 15 C 0.07 1.87 5.49 86.30 0.47 2.35 16 16 N -0.54 -12.95 4.86 -895.68 -4.35 -17.30 16 17 C 0.06 1.12 5.58 86.31 0.48 1.60 16 18 C 0.06 1.04 5.61 86.31 0.48 1.52 16 19 N -0.54 -10.12 4.70 -900.29 -4.23 -14.35 16 20 C 0.10 1.48 5.12 85.56 0.44 1.91 16 21 C -0.09 -1.51 4.89 -19.87 -0.10 -1.60 16 22 C -0.13 -2.11 7.92 22.27 0.18 -1.93 16 23 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 25 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 26 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 27 C 0.07 1.37 5.25 86.31 0.45 1.82 16 28 C 0.05 1.34 4.93 86.31 0.43 1.76 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.77 6.50 -2.38 -0.02 1.76 16 32 H 0.04 1.95 4.86 -2.39 -0.01 1.94 16 33 H 0.05 2.25 8.01 -2.39 -0.02 2.23 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.34 12.22 7.97 -89.70 -0.72 11.51 16 36 H 0.04 1.29 5.97 -2.39 -0.01 1.27 16 37 H 0.05 1.87 6.26 -2.39 -0.01 1.85 16 38 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 43 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 1.17 7.97 -2.39 -0.02 1.15 16 45 H 0.05 0.67 8.06 -2.39 -0.02 0.65 16 46 H 0.12 1.85 7.99 -2.91 -0.02 1.83 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 49 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 50 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 51 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.08 1.70 5.95 -2.39 -0.01 1.68 16 53 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 54 H 0.08 2.08 5.99 -2.39 -0.01 2.06 16 Total: -1.00 -68.27 405.37 -3.93 -72.20 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.02 Total: 29.58 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 5.63 Total: -25.72 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -11.31 Total: -121.79 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.77 Total: 45.73 kcal Total: -68.27 -3.93 -72.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390911377.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.811 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds