Wall clock time and date at job start Tue Mar 31 2020 16:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 H 1.08991 * 109.47133 * 54.81417 * 3 2 1 5 5 C 1.50700 * 109.46735 * 174.81838 * 3 2 1 6 6 H 1.08007 * 120.00183 * 120.00109 * 5 3 2 7 7 C 1.37883 * 119.99892 * 299.99226 * 5 3 2 8 8 N 1.31510 * 119.99816 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99743 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47091 * 90.00156 * 9 7 5 11 11 H 1.48499 * 109.46984 * 209.99951 * 9 7 5 12 12 H 1.48495 * 109.47668 * 330.00393 * 9 7 5 13 13 N 1.46900 * 109.46970 * 294.81453 * 3 2 1 14 14 C 1.46893 * 110.99942 * 153.84861 * 13 3 2 15 15 C 1.53008 * 109.47083 * 175.13612 * 14 13 3 16 16 N 1.46901 * 109.47227 * 180.02562 * 15 14 13 17 17 C 1.46949 * 111.00100 * 189.99980 * 16 15 14 18 18 C 1.53045 * 109.36616 * 183.18473 * 17 16 15 19 19 N 1.46955 * 109.36895 * 301.60183 * 18 17 16 20 20 C 1.46893 * 111.00386 * 183.18586 * 19 18 17 21 21 C 1.50695 * 109.47377 * 170.00045 * 20 19 18 22 22 C 1.38239 * 120.00097 * 89.99963 * 21 20 19 23 23 C 1.38234 * 119.99940 * 179.97438 * 22 21 20 24 24 C 1.38236 * 120.00276 * 359.97438 * 23 22 21 25 25 C 1.38240 * 119.99707 * 359.97438 * 24 23 22 26 26 C 1.38230 * 120.00114 * 0.07210 * 25 24 23 27 27 C 1.46961 * 110.87697 * 59.31446 * 19 18 17 28 28 C 1.46957 * 110.99799 * 313.80056 * 16 15 14 29 29 H 1.08994 * 109.47233 * 186.25134 * 1 2 3 30 30 H 1.09000 * 109.47614 * 306.26071 * 1 2 3 31 31 H 1.09008 * 109.46318 * 66.25475 * 1 2 3 32 32 H 1.09000 * 109.47483 * 239.99386 * 2 1 3 33 33 H 1.09001 * 109.46868 * 119.99480 * 2 1 3 34 34 H 0.96998 * 119.99541 * 179.97438 * 8 7 5 35 35 H 1.00898 * 111.00065 * 29.88946 * 13 3 2 36 36 H 1.09002 * 109.47083 * 55.14161 * 14 13 3 37 37 H 1.08993 * 109.47575 * 295.13529 * 14 13 3 38 38 H 1.08994 * 109.46623 * 60.00038 * 15 14 13 39 39 H 1.09001 * 109.46805 * 299.99718 * 15 14 13 40 40 H 1.09001 * 109.48975 * 63.21870 * 17 16 15 41 41 H 1.08997 * 109.49139 * 303.15957 * 17 16 15 42 42 H 1.08998 * 109.49244 * 181.62883 * 18 17 16 43 43 H 1.09009 * 109.48614 * 61.57243 * 18 17 16 44 44 H 1.09005 * 109.47341 * 49.99773 * 20 19 18 45 45 H 1.09003 * 109.47555 * 290.00112 * 20 19 18 46 46 H 1.07995 * 120.00173 * 359.97438 * 22 21 20 47 47 H 1.08001 * 119.99966 * 179.97438 * 23 22 21 48 48 H 1.07998 * 120.00096 * 179.72354 * 24 23 22 49 49 H 1.08004 * 120.00008 * 179.97438 * 25 24 23 50 50 H 1.08006 * 120.00254 * 179.97438 * 26 25 24 51 51 H 1.09006 * 109.48575 * 60.65569 * 27 19 18 52 52 H 1.09002 * 109.48455 * 180.71329 * 27 19 18 53 53 H 1.08995 * 109.49164 * 296.77824 * 28 16 15 54 54 H 1.09004 * 109.48832 * 56.84294 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8398 5 6 3.5415 1.4444 0.1283 6 1 4.1492 1.8881 -0.6465 7 6 4.1395 0.8797 1.2350 8 7 3.3996 0.3391 2.1782 9 14 6.0007 0.8826 1.3943 10 1 6.4354 2.1164 2.0974 11 1 6.4329 -0.3075 2.1702 12 1 6.6135 0.8415 0.0423 13 7 1.6552 2.0979 -1.2571 14 6 1.5493 3.5524 -1.0815 15 6 1.2670 4.2102 -2.4339 16 7 1.1616 5.6649 -2.2584 17 6 0.6596 6.3078 -3.4807 18 6 0.6399 7.8255 -3.2844 19 7 -0.2093 8.1569 -2.1317 20 6 -0.3146 9.6115 -1.9562 21 6 -1.3763 9.9183 -0.9317 22 6 -1.0393 10.0140 0.4056 23 6 -2.0131 10.2960 1.3453 24 6 -3.3238 10.4828 0.9478 25 6 -3.6606 10.3881 -0.3896 26 6 -2.6870 10.1051 -1.3292 27 6 0.2928 7.5138 -0.9093 28 6 0.3125 5.9962 -1.1056 29 1 -0.3633 -1.0215 0.1119 30 1 -0.3634 0.6078 0.8286 31 1 -0.3632 0.4139 -0.9408 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8203 -0.0585 2.9565 35 1 0.7944 1.7134 -1.6166 36 1 2.4852 3.9388 -0.6780 37 1 0.7359 3.7769 -0.3916 38 1 0.3311 3.8238 -2.8374 39 1 2.0804 3.9858 -3.1238 40 1 -0.3505 5.9549 -3.6887 41 1 1.3119 6.0578 -4.3174 42 1 0.2406 8.3028 -4.1793 43 1 1.6540 8.1820 -3.1035 44 1 -0.5823 10.0737 -2.9064 45 1 0.6428 10.0069 -1.6168 46 1 -0.0152 9.8686 0.7161 47 1 -1.7499 10.3704 2.3901 48 1 -4.0854 10.6987 1.6825 49 1 -4.6848 10.5336 -0.7002 50 1 -2.9502 10.0307 -2.3741 51 1 1.3029 7.8668 -0.7014 52 1 -0.3596 7.7639 -0.0727 53 1 -0.7015 5.6397 -1.2865 54 1 0.7118 5.5188 -0.2107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390911380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:32 Heat of formation + Delta-G solvation = 19.670195 kcal Electronic energy + Delta-G solvation = -28476.196752 eV Core-core repulsion = 24832.718223 eV Total energy + Delta-G solvation = -3643.478530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.81034 -39.77382 -38.29761 -36.73597 -34.48257 -33.30211 -32.33105 -32.03804 -31.62772 -29.87747 -28.43262 -26.85275 -25.29148 -24.71820 -24.24499 -23.34974 -22.18084 -21.89211 -21.42884 -20.67471 -18.41152 -17.68904 -17.46740 -16.78265 -16.66922 -16.32677 -16.18668 -15.99814 -15.78396 -15.61591 -15.43128 -15.23396 -15.02666 -14.64531 -14.33042 -14.22345 -13.86910 -13.64442 -13.50998 -13.24462 -13.16014 -13.09010 -13.00052 -12.77084 -12.60413 -12.50237 -12.31241 -12.12254 -12.10458 -11.96576 -11.89148 -11.79317 -11.55790 -11.52457 -11.28072 -11.01263 -10.43666 -9.78397 -9.70215 -9.40207 -9.22762 -9.01772 -8.07160 -6.18846 0.43766 0.53407 1.40813 1.41608 1.52740 2.43713 2.71560 2.82875 3.17690 3.18211 3.69769 3.78957 3.89049 3.97660 4.07382 4.15597 4.17003 4.19078 4.24611 4.33113 4.41412 4.45876 4.47793 4.48730 4.52914 4.55513 4.61624 4.64289 4.69812 4.71960 4.80556 4.83279 4.88058 4.97543 4.98967 5.04048 5.10996 5.12900 5.14035 5.18939 5.24826 5.36899 5.58525 5.58535 5.65318 5.70800 5.74395 5.88255 5.92171 5.96468 6.11221 6.16626 6.17634 6.35228 6.49236 6.93889 6.98441 7.49952 8.96256 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.002297 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.635551 B =12186.951592 C =12432.785023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.227 3.773 4 H -0.034 1.034 5 C -0.511 4.511 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.686 5.686 14 C 0.076 3.924 15 C 0.077 3.923 16 N -0.547 5.547 17 C 0.059 3.941 18 C 0.062 3.938 19 N -0.539 5.539 20 C 0.097 3.903 21 C -0.088 4.088 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.109 4.109 27 C 0.065 3.935 28 C 0.056 3.944 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.260 0.740 35 H 0.328 0.672 36 H 0.049 0.951 37 H 0.015 0.985 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.038 0.962 44 H 0.099 0.901 45 H 0.043 0.957 46 H 0.119 0.881 47 H 0.133 0.867 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.132 0.868 51 H 0.035 0.965 52 H 0.081 0.919 53 H 0.032 0.968 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 21.125 -8.694 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.118 3.882 4 H -0.016 1.016 5 C -0.549 4.549 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.318 5.318 14 C -0.054 4.054 15 C -0.051 4.051 16 N -0.272 5.272 17 C -0.069 4.069 18 C -0.066 4.066 19 N -0.264 5.264 20 C -0.030 4.030 21 C -0.089 4.089 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.128 4.128 27 C -0.063 4.063 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.057 0.943 44 H 0.117 0.883 45 H 0.061 0.939 46 H 0.137 0.863 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.157 0.843 50 H 0.150 0.850 51 H 0.053 0.947 52 H 0.099 0.901 53 H 0.050 0.950 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.750 21.055 -8.787 26.136 hybrid contribution 0.326 -0.287 1.192 1.268 sum -12.424 20.768 -7.595 25.364 Atomic orbital electron populations 1.21747 0.96267 1.01174 1.00430 1.21597 0.94212 0.98833 1.01335 1.18914 0.94057 0.90668 0.84522 1.01602 1.21461 0.92770 1.36370 1.04328 0.93362 1.25682 1.02349 0.95330 0.95548 1.69998 1.36263 1.39841 1.09961 0.85601 0.80777 0.77481 0.78033 1.20447 1.20672 1.19595 1.60472 1.37005 1.02999 1.31349 1.21805 0.99014 0.88758 0.95794 1.21876 1.00396 0.86056 0.96776 1.62188 1.50824 1.09290 1.04940 1.22210 0.98713 0.94061 0.91941 1.22191 0.95398 0.94940 0.94055 1.62195 1.50928 1.09122 1.04151 1.21047 0.95898 0.87462 0.98623 1.19864 0.95185 0.99701 0.94124 1.21242 0.99885 1.00394 0.93081 1.21389 0.93557 0.99961 1.00134 1.21457 0.96696 0.99927 0.96706 1.21452 1.00223 0.99750 0.93303 1.21225 0.92238 0.98817 1.00475 1.22108 0.98196 0.92915 0.93127 1.22166 0.94793 0.95883 0.94362 0.92283 0.94663 0.92356 0.94303 0.91350 0.93052 0.85389 0.93209 0.96691 0.94503 0.90306 0.94332 0.89118 0.87927 0.94344 0.88298 0.93869 0.86253 0.84949 0.84454 0.84295 0.84983 0.94723 0.90079 0.94965 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.63 71.98 0.69 -4.56 16 2 C -0.12 -5.79 5.35 30.59 0.16 -5.63 16 3 C 0.23 11.64 2.03 44.17 0.09 11.73 16 4 H -0.03 -1.92 7.84 -2.39 -0.02 -1.94 16 5 C -0.51 -29.13 8.60 25.60 0.22 -28.91 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.50 5.29 84.66 0.45 0.95 16 8 N -0.92 -53.77 11.29 21.45 0.24 -53.52 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.69 -29.47 6.27 -495.46 -3.11 -32.58 16 14 C 0.08 2.96 4.71 86.31 0.41 3.36 16 15 C 0.08 2.38 5.58 86.31 0.48 2.86 16 16 N -0.55 -15.23 4.86 -895.75 -4.35 -19.58 16 17 C 0.06 1.27 5.58 86.31 0.48 1.75 16 18 C 0.06 1.14 5.61 86.31 0.48 1.62 16 19 N -0.54 -10.89 4.70 -900.30 -4.23 -15.12 16 20 C 0.10 1.61 5.12 85.56 0.44 2.04 16 21 C -0.09 -1.59 4.89 -19.87 -0.10 -1.69 16 22 C -0.13 -2.35 7.92 22.27 0.18 -2.17 16 23 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 25 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 26 C -0.11 -1.81 9.70 22.27 0.22 -1.59 16 27 C 0.06 1.54 5.25 86.31 0.45 1.99 16 28 C 0.06 1.57 4.93 86.31 0.43 1.99 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.92 6.66 -2.38 -0.02 1.91 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 3.72 5.95 -2.39 -0.01 3.70 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.33 12.52 6.62 -89.70 -0.59 11.92 16 36 H 0.05 2.23 7.97 -2.39 -0.02 2.21 16 37 H 0.02 0.59 6.26 -2.39 -0.01 0.57 16 38 H 0.04 1.06 8.08 -2.39 -0.02 1.04 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.40 8.07 -2.39 -0.02 1.38 16 43 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.10 1.30 7.97 -2.38 -0.02 1.28 16 45 H 0.04 0.72 8.06 -2.39 -0.02 0.71 16 46 H 0.12 2.09 7.99 -2.91 -0.02 2.07 16 47 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 49 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 50 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 51 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 52 H 0.08 1.91 5.95 -2.39 -0.01 1.90 16 53 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 54 H 0.07 2.17 5.99 -2.38 -0.01 2.16 16 Total: -1.00 -63.69 413.35 -3.42 -67.11 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.25 Total: 28.41 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 5.75 Total: -21.80 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -11.45 Total: -120.80 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.69 -3.42 -67.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390911380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.775 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds