Wall clock time and date at job start Tue Mar 31 2020 16:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46998 * 2 1 4 4 H 1.09002 * 109.47078 * 54.73216 * 3 2 1 5 5 C 1.50693 * 109.47165 * 174.73274 * 3 2 1 6 6 H 1.08000 * 120.00312 * 120.18812 * 5 3 2 7 7 C 1.37889 * 119.99787 * 300.18429 * 5 3 2 8 8 N 1.31512 * 119.99884 * 166.64216 * 7 5 3 9 9 Si 1.86798 * 119.99941 * 346.64916 * 7 5 3 10 10 H 1.48506 * 109.46823 * 264.65581 * 9 7 5 11 11 H 1.48500 * 109.47100 * 24.65496 * 9 7 5 12 12 H 1.48492 * 109.47036 * 144.66023 * 9 7 5 13 13 N 1.46903 * 109.47168 * 294.73383 * 3 2 1 14 14 C 1.46891 * 111.00400 * 101.60856 * 13 3 2 15 15 C 1.53000 * 109.47544 * 183.32337 * 14 13 3 16 16 C 1.52995 * 109.47353 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47019 * 179.97438 * 16 15 14 18 18 C 1.46946 * 111.00173 * 293.79725 * 17 16 15 19 19 C 1.53056 * 109.36682 * 176.81120 * 18 17 16 20 20 N 1.46952 * 109.36130 * 58.39943 * 19 18 17 21 21 C 1.39671 * 110.99967 * 176.81192 * 20 19 18 22 22 C 1.38909 * 120.07731 * 123.52012 * 21 20 19 23 23 C 1.38108 * 119.92891 * 179.77014 * 22 21 20 24 24 C 1.38287 * 120.06847 * 0.51357 * 23 22 21 25 25 C 1.38276 * 120.15313 * 359.74000 * 24 23 22 26 26 C 1.38108 * 120.07699 * 0.02562 * 25 24 23 27 27 C 1.46959 * 110.88083 * 300.68093 * 20 19 18 28 28 C 1.46951 * 110.99836 * 169.99194 * 17 16 15 29 29 H 1.08996 * 109.46877 * 306.71287 * 1 2 3 30 30 H 1.09002 * 109.46681 * 66.71509 * 1 2 3 31 31 H 1.09000 * 109.47055 * 186.70668 * 1 2 3 32 32 H 1.08996 * 109.47351 * 240.00124 * 2 1 3 33 33 H 1.08994 * 109.46900 * 119.99838 * 2 1 3 34 34 H 0.96997 * 120.00347 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99459 * 225.56236 * 13 3 2 36 36 H 1.09003 * 109.47403 * 303.31905 * 14 13 3 37 37 H 1.09004 * 109.47481 * 63.32204 * 14 13 3 38 38 H 1.09003 * 109.46418 * 300.00172 * 15 14 13 39 39 H 1.08997 * 109.47309 * 59.99044 * 15 14 13 40 40 H 1.09000 * 109.46733 * 299.99511 * 16 15 14 41 41 H 1.08994 * 109.47395 * 59.99547 * 16 15 14 42 42 H 1.09001 * 109.48699 * 296.77931 * 18 17 16 43 43 H 1.09007 * 109.49344 * 56.83976 * 18 17 16 44 44 H 1.08998 * 109.48458 * 298.43012 * 19 18 17 45 45 H 1.09000 * 109.48674 * 178.36427 * 19 18 17 46 46 H 1.08007 * 120.03641 * 0.02562 * 22 21 20 47 47 H 1.07999 * 119.96199 * 180.25570 * 23 22 21 48 48 H 1.08010 * 119.91922 * 179.76719 * 24 23 22 49 49 H 1.08002 * 119.96362 * 180.02562 * 25 24 23 50 50 H 1.08000 * 120.03748 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.48813 * 299.35352 * 27 20 19 52 52 H 1.09006 * 109.48461 * 179.29259 * 27 20 19 53 53 H 1.09001 * 109.49377 * 303.16118 * 28 17 16 54 54 H 1.09007 * 109.48938 * 63.22761 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9829 0.8391 5 6 3.5413 1.4446 0.1304 6 1 4.1499 1.8906 -0.6422 7 6 4.1380 0.8770 1.2364 8 7 5.4316 0.6400 1.2366 9 14 3.1089 0.4445 2.7341 10 1 3.1752 1.5551 3.7177 11 1 1.6983 0.2326 2.3211 12 1 3.6351 -0.7979 3.3542 13 7 1.6569 2.0974 -1.2580 14 6 0.4923 2.9712 -1.0632 15 6 0.0730 3.5694 -2.4076 16 6 -1.1396 4.4800 -2.2046 17 7 -1.5417 5.0549 -3.4953 18 6 -0.5089 5.9635 -4.0119 19 6 -0.9290 6.4780 -5.3908 20 7 -2.2234 7.1648 -5.2809 21 6 -2.6058 7.7114 -6.5080 22 6 -3.8252 7.3637 -7.0752 23 6 -4.2024 7.9097 -8.2865 24 6 -3.3629 8.7934 -8.9396 25 6 -2.1460 9.1376 -8.3803 26 6 -1.7648 8.5991 -7.1671 27 6 -3.2564 6.2561 -4.7643 28 6 -2.8362 5.7416 -3.3855 29 1 -0.3633 0.6143 0.8238 30 1 -0.3633 0.4063 -0.9440 31 1 -0.3633 -1.0206 0.1200 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8513 0.2404 2.0144 35 1 2.4326 2.6105 -1.6493 36 1 -0.3328 2.3904 -0.6509 37 1 0.7518 3.7742 -0.3733 38 1 0.8982 4.1502 -2.8199 39 1 -0.1864 2.7665 -3.0975 40 1 -1.9648 3.8995 -1.7921 41 1 -0.8796 5.2829 -1.5149 42 1 -0.3913 6.8056 -3.3299 43 1 0.4372 5.4285 -4.0961 44 1 -1.0201 5.6384 -6.0799 45 1 -0.1780 7.1748 -5.7632 46 1 -4.4795 6.6703 -6.5676 47 1 -5.1522 7.6429 -8.7260 48 1 -3.6586 9.2160 -9.8886 49 1 -1.4929 9.8284 -8.8929 50 1 -0.8141 8.8681 -6.7310 51 1 -3.3740 5.4140 -5.4463 52 1 -4.2024 6.7912 -4.6801 53 1 -3.5872 5.0449 -3.0129 54 1 -2.7451 6.5813 -2.6963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566982412.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:20 Heat of formation + Delta-G solvation = 25.348903 kcal Electronic energy + Delta-G solvation = -28014.495134 eV Core-core repulsion = 24371.262852 eV Total energy + Delta-G solvation = -3643.232283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.35900 -39.42882 -38.43492 -36.77159 -34.83580 -33.72785 -32.62065 -31.90275 -31.40077 -30.37743 -28.88043 -27.05981 -25.29460 -24.68535 -23.83161 -22.90991 -22.50084 -21.91028 -21.27831 -20.76213 -18.94568 -18.66473 -17.35618 -16.90335 -16.64967 -16.47598 -16.29363 -15.89434 -15.64006 -15.58084 -15.43738 -14.96222 -14.93057 -14.78293 -14.50247 -14.38177 -14.25008 -13.82817 -13.66090 -13.42595 -13.16097 -13.00213 -12.83897 -12.68849 -12.62516 -12.53928 -12.39227 -12.20845 -12.11088 -12.02122 -11.80540 -11.71308 -11.53490 -11.36344 -11.12352 -10.92007 -10.67231 -10.58038 -9.84419 -9.35841 -9.06247 -8.80255 -8.33180 -6.33943 0.46417 0.49981 1.32794 1.37421 1.47561 2.33961 2.62038 2.80416 2.98168 3.01659 3.58668 3.75647 3.88363 3.97269 4.06106 4.09272 4.22785 4.24716 4.29891 4.31644 4.41523 4.44363 4.47281 4.51275 4.53516 4.58445 4.60587 4.64765 4.67964 4.71174 4.76815 4.78498 4.83992 4.85939 4.92121 4.95032 5.01459 5.13729 5.22172 5.25939 5.30793 5.31852 5.35852 5.46176 5.52561 5.59143 5.67393 5.81184 5.83197 5.95614 6.02215 6.06310 6.09501 6.35855 6.50355 6.68592 6.88614 7.32270 8.83149 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.001799 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.595400 B =15562.353179 C =16083.845204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.197 3.803 4 H 0.001 0.999 5 C -0.538 4.538 6 H 0.036 0.964 7 C 0.018 3.982 8 N -0.942 5.942 9 Si 0.924 3.076 10 H -0.283 1.283 11 H -0.213 1.213 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.060 3.940 15 C -0.097 4.097 16 C 0.066 3.934 17 N -0.545 5.545 18 C 0.054 3.946 19 C 0.068 3.932 20 N -0.500 5.500 21 C 0.097 3.903 22 C -0.182 4.182 23 C -0.101 4.101 24 C -0.155 4.155 25 C -0.102 4.102 26 C -0.156 4.156 27 C 0.058 3.942 28 C 0.056 3.944 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.332 0.668 36 H 0.075 0.925 37 H 0.012 0.988 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.126 0.874 51 H 0.052 0.948 52 H 0.096 0.904 53 H 0.098 0.902 54 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.357 15.607 -16.665 32.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.087 3.913 4 H 0.019 0.981 5 C -0.576 4.576 6 H 0.054 0.946 7 C -0.181 4.181 8 N -0.581 5.581 9 Si 0.748 3.252 10 H -0.209 1.209 11 H -0.136 1.136 12 H -0.212 1.212 13 N -0.311 5.311 14 C -0.070 4.070 15 C -0.135 4.135 16 C -0.062 4.062 17 N -0.270 5.270 18 C -0.074 4.074 19 C -0.058 4.058 20 N -0.215 5.215 21 C -0.001 4.001 22 C -0.203 4.203 23 C -0.120 4.120 24 C -0.174 4.174 25 C -0.121 4.121 26 C -0.176 4.176 27 C -0.069 4.069 28 C -0.072 4.072 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.152 0.848 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.144 0.856 51 H 0.071 0.929 52 H 0.115 0.885 53 H 0.116 0.884 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.566 14.953 -16.709 32.529 hybrid contribution 1.069 0.613 1.485 1.930 sum -22.497 15.566 -15.224 31.308 Atomic orbital electron populations 1.21749 0.95197 1.01026 1.01499 1.21901 0.95852 0.97822 0.99743 1.19308 0.92208 0.92167 0.87581 0.98125 1.21609 0.91919 1.38207 1.05879 0.94616 1.25817 0.95873 0.94541 1.01828 1.70108 1.12630 1.44423 1.30939 0.86321 0.82493 0.77538 0.78822 1.20907 1.13593 1.21201 1.60535 1.08891 1.34062 1.27588 1.22054 0.94140 0.94234 0.96591 1.21384 0.96890 0.98687 0.96568 1.21974 0.98084 0.97008 0.89130 1.62155 1.03142 1.34413 1.27263 1.22226 0.95642 0.94500 0.95054 1.22244 0.89762 0.96921 0.96841 1.59291 1.04832 1.34173 1.23253 1.19160 0.95457 0.96720 0.88745 1.21527 0.98060 1.03220 0.97493 1.21324 1.00120 0.96115 0.94393 1.21403 0.94843 0.99813 1.01354 1.21309 0.96929 0.99001 0.94822 1.20989 1.00666 0.99195 0.96761 1.22353 0.94583 0.94325 0.95668 1.22227 0.91552 0.97271 0.96107 0.93618 0.91709 0.92636 0.93659 0.94029 0.92590 0.85126 0.90682 0.96932 0.92615 0.91134 0.89648 0.95044 0.94496 0.89513 0.93740 0.88996 0.84770 0.84180 0.84242 0.84166 0.85646 0.92930 0.88544 0.88418 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 8.64 71.98 0.62 -3.96 16 2 C -0.11 -4.89 4.73 30.60 0.14 -4.74 16 3 C 0.20 9.04 1.76 44.17 0.08 9.11 16 4 H 0.00 0.05 6.67 -2.39 -0.02 0.04 16 5 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 6 H 0.04 2.23 7.65 -2.91 -0.02 2.21 16 7 C 0.02 1.03 5.35 84.66 0.45 1.48 16 8 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 9 Si 0.92 43.16 25.68 68.60 1.76 44.92 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.21 -8.92 5.15 99.48 0.51 -8.41 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 N -0.68 -26.83 6.09 -495.46 -3.02 -29.85 16 14 C 0.06 1.86 5.06 86.30 0.44 2.30 16 15 C -0.10 -2.45 5.44 30.59 0.17 -2.29 16 16 C 0.07 1.38 4.96 86.30 0.43 1.81 16 17 N -0.54 -10.80 4.71 -895.73 -4.22 -15.02 16 18 C 0.05 1.06 5.41 86.31 0.47 1.53 16 19 C 0.07 1.24 5.38 86.31 0.46 1.70 16 20 N -0.50 -9.13 4.75 -694.78 -3.30 -12.44 16 21 C 0.10 1.75 5.64 38.21 0.22 1.96 16 22 C -0.18 -2.89 8.82 22.40 0.20 -2.69 16 23 C -0.10 -1.36 10.04 22.25 0.22 -1.14 16 24 C -0.16 -2.00 10.04 22.29 0.22 -1.78 16 25 C -0.10 -1.43 10.04 22.25 0.22 -1.20 16 26 C -0.16 -2.62 9.19 22.40 0.21 -2.41 16 27 C 0.06 0.91 4.29 86.31 0.37 1.28 16 28 C 0.06 0.93 5.61 86.31 0.48 1.42 16 29 H 0.04 1.44 8.08 -2.39 -0.02 1.43 16 30 H 0.06 2.04 6.88 -2.39 -0.02 2.02 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.84 4.10 -2.39 -0.01 1.83 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.33 13.75 7.94 -89.69 -0.71 13.04 16 36 H 0.07 2.23 6.05 -2.39 -0.01 2.21 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.06 1.44 6.49 -2.39 -0.02 1.42 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 1.63 8.03 -2.39 -0.02 1.61 16 41 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 1.76 6.34 -2.38 -0.02 1.74 16 44 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 1.51 6.82 -2.39 -0.02 1.49 16 46 H 0.13 1.78 5.81 -2.91 -0.02 1.76 16 47 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 50 H 0.13 1.94 7.19 -2.91 -0.02 1.92 16 51 H 0.05 0.87 7.57 -2.39 -0.02 0.85 16 52 H 0.10 1.27 7.18 -2.38 -0.02 1.26 16 53 H 0.10 1.34 8.07 -2.39 -0.02 1.32 16 54 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -65.70 402.52 -2.88 -68.58 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.04 Total: 30.03 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 5.64 Total: -27.81 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -10.24 Total: -115.72 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.76 Total: 44.92 kcal Total: -65.70 -2.88 -68.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566982412.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.926 kcal (2) G-P(sol) polarization free energy of solvation -65.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds