Wall clock time and date at job start Tue Mar 31 2020 16:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48501 * 109.46914 * 264.99396 * 3 2 1 5 5 H 1.48506 * 109.47121 * 24.99345 * 3 2 1 6 6 H 1.48494 * 109.47016 * 144.99567 * 3 2 1 7 7 C 1.37874 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00229 * 190.19196 * 7 2 1 9 9 C 1.50707 * 119.99923 * 10.19669 * 7 2 1 10 10 O 1.42904 * 113.41467 * 52.27496 * 9 7 2 11 11 C 1.53500 * 114.20358 * 185.47338 * 9 7 2 12 12 N 1.47067 * 88.04346 * 139.68341 * 11 9 7 13 13 C 1.34777 * 136.05444 * 152.88182 * 12 11 9 14 14 O 1.21636 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.47171 * 120.00156 * 179.97438 * 13 12 11 16 16 N 1.30573 * 125.53190 * 359.69621 * 15 13 12 17 17 C 1.30663 * 115.92548 * 179.81885 * 16 15 13 18 18 C 1.34389 * 115.75594 * 0.47856 * 17 16 15 19 19 Br 1.89099 * 125.46664 * 179.76721 * 18 17 16 20 20 S 1.71072 * 109.07163 * 359.74366 * 18 17 16 21 21 C 1.47064 * 87.88774 * 332.85026 * 12 11 9 22 22 H 0.97003 * 120.00637 * 0.02562 * 1 2 3 23 23 H 0.96702 * 113.99954 * 317.21461 * 10 9 7 24 24 H 1.08994 * 113.46825 * 24.87351 * 11 9 7 25 25 H 1.08998 * 113.46503 * 254.49111 * 11 9 7 26 26 H 1.08005 * 122.12487 * 180.20252 * 17 16 15 27 27 H 1.08996 * 113.46705 * 141.90098 * 21 12 11 28 28 H 1.09000 * 113.46385 * 272.28436 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9853 -1.3948 5 1 1.3976 2.6809 0.5916 6 1 3.4897 1.4731 0.8031 7 6 2.0045 -1.1940 0.0005 8 1 3.0717 -1.2014 0.1660 9 6 1.2688 -2.4890 -0.2299 10 8 0.4612 -2.4812 -1.4089 11 6 2.1386 -3.7438 -0.0711 12 7 1.0018 -4.3844 0.6074 13 6 0.5601 -5.6460 0.7795 14 8 1.1762 -6.5772 0.2970 15 6 -0.6669 -5.8971 1.5523 16 7 -1.4060 -4.9831 2.1210 17 6 -2.4603 -5.4167 2.7594 18 6 -2.6391 -6.7486 2.7547 19 35 -4.0627 -7.6675 3.5943 20 16 -1.3726 -7.4795 1.8667 21 6 0.5597 -3.0426 1.0159 22 1 -0.4851 0.8400 -0.0004 23 1 -0.0389 -1.6637 -1.5377 24 1 3.0024 -3.5941 0.5766 25 1 2.3993 -4.2140 -1.0192 26 1 -3.1423 -4.7475 3.2630 27 1 -0.5227 -2.9161 0.9916 28 1 1.0022 -2.7066 1.9537 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619444094.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:36 Heat of formation + Delta-G solvation = 11.430269 kcal Electronic energy + Delta-G solvation = -17968.498478 eV Core-core repulsion = 14773.670839 eV Total energy + Delta-G solvation = -3194.827639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16788 -39.21034 -37.45404 -34.09962 -32.61117 -32.31655 -30.00625 -28.32855 -26.18636 -25.10744 -24.97041 -21.89515 -20.02294 -18.69926 -18.05205 -17.44127 -16.42169 -15.72200 -15.36341 -15.20089 -14.79614 -14.27887 -14.16221 -13.54983 -13.18694 -12.70025 -12.52429 -12.09974 -12.04402 -11.77241 -11.55234 -11.07755 -10.97833 -10.74514 -10.54389 -10.33872 -10.20809 -9.76561 -9.52610 -9.22218 -9.01057 -8.91996 -8.39116 -7.96823 -6.40435 -4.50042 -0.00170 0.56246 1.33071 1.48356 2.29776 3.15538 3.23493 3.24811 3.37978 3.42095 4.14568 4.20762 4.78447 4.87162 5.01062 5.44143 5.70914 5.91708 6.07980 6.33197 6.53102 6.57160 6.91049 7.04812 7.35226 7.60339 7.75369 8.22002 8.46522 8.53119 9.20423 9.22959 10.65744 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.003189 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.725164 B = 8777.567857 C = 9616.718846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.237 3.763 10 O -0.566 6.566 11 C 0.111 3.889 12 N -0.604 5.604 13 C 0.607 3.393 14 O -0.552 6.552 15 C 0.026 3.974 16 N -0.412 5.412 17 C 0.079 3.921 18 C -0.288 4.288 19 Br 0.029 6.971 20 S 0.280 5.720 21 C 0.088 3.912 22 H 0.272 0.728 23 H 0.388 0.612 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.184 0.816 27 H 0.081 0.919 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -12.078 7.878 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.092 0.908 9 C 0.196 3.804 10 O -0.375 6.375 11 C -0.011 4.011 12 N -0.335 5.335 13 C 0.391 3.609 14 O -0.432 6.432 15 C -0.250 4.250 16 N -0.129 5.129 17 C -0.083 4.083 18 C -0.490 4.490 19 Br 0.111 6.889 20 S 0.536 5.464 21 C -0.034 4.034 22 H 0.082 0.918 23 H 0.239 0.761 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.201 0.799 27 H 0.099 0.901 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.967 -14.076 7.549 17.850 hybrid contribution -0.422 2.288 0.618 2.407 sum -8.389 -11.788 8.167 16.615 Atomic orbital electron populations 1.69773 1.06014 1.28153 1.48374 1.25082 0.95016 0.99821 0.93123 0.86412 0.79793 0.82077 0.78633 1.20141 1.21068 1.19616 1.21285 0.95251 0.89906 1.51425 0.90843 1.19589 0.87268 0.91100 0.82475 1.86077 1.63351 1.44407 1.43645 1.23480 0.90047 0.91333 0.96251 1.49587 1.28332 1.04663 1.50903 1.16101 0.82159 0.82325 0.80285 1.90814 1.58247 1.42281 1.51815 1.28116 1.01262 0.92013 1.03629 1.67131 1.03852 1.33921 1.07953 1.21905 0.95842 0.91629 0.98881 1.27467 1.06109 1.00625 1.14842 1.96718 1.39980 1.74428 1.77730 1.84027 1.12429 1.08892 1.41071 1.24276 1.02198 0.75594 1.01357 0.91827 0.76096 0.88894 0.91056 0.79924 0.90104 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.07 11.81 55.43 0.65 -21.41 15 2 C 0.07 1.80 5.21 -17.82 -0.09 1.71 15 3 Si 0.90 19.06 29.55 -169.99 -5.02 14.04 15 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 5 H -0.29 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.54 -13.16 8.65 -34.44 -0.30 -13.46 15 8 H 0.07 1.74 7.83 -52.49 -0.41 1.32 15 9 C 0.24 5.57 1.42 -91.16 -0.13 5.44 15 10 O -0.57 -14.08 13.57 -35.23 -0.48 -14.56 15 11 C 0.11 2.34 8.02 -8.50 -0.07 2.27 15 12 N -0.60 -12.93 3.69 -186.35 -0.69 -13.61 15 13 C 0.61 12.57 8.06 -12.63 -0.10 12.47 15 14 O -0.55 -12.22 17.71 5.25 0.09 -12.12 15 15 C 0.03 0.46 7.43 -14.46 -0.11 0.35 15 16 N -0.41 -7.10 9.03 -11.50 -0.10 -7.21 15 17 C 0.08 1.09 11.19 -19.41 -0.22 0.88 15 18 C -0.29 -3.63 6.82 29.37 0.20 -3.43 15 19 Br 0.03 0.29 34.08 -68.01 -2.32 -2.03 15 20 S 0.28 3.84 23.03 -107.50 -2.48 1.36 15 21 C 0.09 1.94 7.16 -8.41 -0.06 1.88 15 22 H 0.27 6.48 8.31 -40.82 -0.34 6.14 15 23 H 0.39 9.65 7.09 45.56 0.32 9.97 15 24 H 0.09 1.77 8.10 -51.93 -0.42 1.35 15 25 H 0.07 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.18 2.08 8.06 -52.48 -0.42 1.65 15 27 H 0.08 1.88 7.45 -51.93 -0.39 1.49 15 28 H 0.08 1.79 8.10 -51.93 -0.42 1.37 15 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -26.89 290.84 -8.13 -35.02 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -1.30 Total: 8.03 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.87 Total: 8.11 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.14 Total: -42.23 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.39 Total: -26.68 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.48 Total: 1.36 kcal Atomic # 35 Polarization: 0.29 SS G_CDS: -2.32 Total: -2.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.89 -8.13 -35.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619444094.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.446 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds