Wall clock time and date at job start Tue Mar 31 2020 16:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48501 * 109.46914 * 264.99396 * 3 2 1 5 5 H 1.48506 * 109.47121 * 24.99345 * 3 2 1 6 6 H 1.48494 * 109.47016 * 144.99567 * 3 2 1 7 7 C 1.37874 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00229 * 190.19196 * 7 2 1 9 9 C 1.50707 * 119.99923 * 10.19669 * 7 2 1 10 10 O 1.42904 * 113.41467 * 52.27496 * 9 7 2 11 11 C 1.53500 * 114.20358 * 185.47338 * 9 7 2 12 12 N 1.47067 * 88.04346 * 139.68341 * 11 9 7 13 13 C 1.34777 * 136.05444 * 152.88182 * 12 11 9 14 14 O 1.21636 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.47171 * 120.00156 * 179.97438 * 13 12 11 16 16 N 1.30573 * 125.53190 * 359.69621 * 15 13 12 17 17 C 1.30663 * 115.92548 * 179.81885 * 16 15 13 18 18 C 1.34389 * 115.75594 * 0.47856 * 17 16 15 19 19 Br 1.89099 * 125.46664 * 179.76721 * 18 17 16 20 20 S 1.71072 * 109.07163 * 359.74366 * 18 17 16 21 21 C 1.47064 * 87.88774 * 332.85026 * 12 11 9 22 22 H 0.97003 * 120.00637 * 0.02562 * 1 2 3 23 23 H 0.96702 * 113.99954 * 317.21461 * 10 9 7 24 24 H 1.08994 * 113.46825 * 24.87351 * 11 9 7 25 25 H 1.08998 * 113.46503 * 254.49111 * 11 9 7 26 26 H 1.08005 * 122.12487 * 180.20252 * 17 16 15 27 27 H 1.08996 * 113.46705 * 141.90098 * 21 12 11 28 28 H 1.09000 * 113.46385 * 272.28436 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9853 -1.3948 5 1 1.3976 2.6809 0.5916 6 1 3.4897 1.4731 0.8031 7 6 2.0045 -1.1940 0.0005 8 1 3.0717 -1.2014 0.1660 9 6 1.2688 -2.4890 -0.2299 10 8 0.4612 -2.4812 -1.4089 11 6 2.1386 -3.7438 -0.0711 12 7 1.0018 -4.3844 0.6074 13 6 0.5601 -5.6460 0.7795 14 8 1.1762 -6.5772 0.2970 15 6 -0.6669 -5.8971 1.5523 16 7 -1.4060 -4.9831 2.1210 17 6 -2.4603 -5.4167 2.7594 18 6 -2.6391 -6.7486 2.7547 19 35 -4.0627 -7.6675 3.5943 20 16 -1.3726 -7.4795 1.8667 21 6 0.5597 -3.0426 1.0159 22 1 -0.4851 0.8400 -0.0004 23 1 -0.0389 -1.6637 -1.5377 24 1 3.0024 -3.5941 0.5766 25 1 2.3993 -4.2140 -1.0192 26 1 -3.1423 -4.7475 3.2630 27 1 -0.5227 -2.9161 0.9916 28 1 1.0022 -2.7066 1.9537 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619444094.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:35 Heat of formation + Delta-G solvation = -7.644748 kcal Electronic energy + Delta-G solvation = -17969.325633 eV Core-core repulsion = 14773.670839 eV Total energy + Delta-G solvation = -3195.654794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62049 -40.63694 -39.13183 -35.94073 -34.20679 -33.67395 -31.38120 -29.79690 -27.67305 -26.83519 -26.51892 -23.26600 -21.63828 -20.10739 -19.50348 -19.14890 -17.92630 -17.35551 -16.92075 -16.82744 -16.07490 -15.98896 -15.62577 -15.00085 -14.63100 -14.42299 -14.18315 -13.82006 -13.57233 -13.12435 -12.79750 -12.71669 -12.58235 -12.24106 -12.17749 -11.85261 -11.65472 -11.10797 -10.97034 -10.76233 -10.60854 -10.23182 -10.11911 -9.66225 -8.24884 -6.40541 -1.21354 -0.54742 0.25122 0.35150 1.04366 1.48924 1.52676 1.60286 1.86102 1.95289 2.42749 2.81740 2.97536 3.53754 3.67522 3.87342 4.13403 4.39737 4.60044 4.67045 4.80902 4.87392 5.10994 5.22027 5.72968 5.89310 6.17820 6.58488 6.65336 6.85905 7.28955 7.32518 8.80861 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.003189 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.725164 B = 8777.567857 C = 9616.718846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.035 3.965 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.219 3.781 10 O -0.577 6.577 11 C 0.113 3.887 12 N -0.612 5.612 13 C 0.605 3.395 14 O -0.574 6.574 15 C -0.025 4.025 16 N -0.431 5.431 17 C 0.066 3.934 18 C -0.275 4.275 19 Br 0.064 6.936 20 S 0.339 5.661 21 C 0.106 3.894 22 H 0.273 0.727 23 H 0.384 0.616 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.206 0.794 27 H 0.065 0.935 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 -12.713 8.987 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.594 4.594 8 H 0.095 0.905 9 C 0.178 3.822 10 O -0.386 6.386 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.392 3.608 14 O -0.455 6.455 15 C -0.299 4.299 16 N -0.149 5.149 17 C -0.095 4.095 18 C -0.477 4.477 19 Br 0.147 6.853 20 S 0.594 5.406 21 C -0.017 4.017 22 H 0.083 0.917 23 H 0.234 0.766 24 H 0.131 0.869 25 H 0.086 0.914 26 H 0.223 0.777 27 H 0.083 0.917 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.650 -14.724 8.659 19.147 hybrid contribution -0.359 2.326 0.343 2.378 sum -9.009 -12.399 9.002 17.774 Atomic orbital electron populations 1.69853 1.07032 1.28806 1.48753 1.25741 0.95698 1.02490 0.92760 0.85466 0.78674 0.78479 0.78385 1.20191 1.21049 1.19109 1.21515 0.95551 0.90590 1.51714 0.90491 1.19827 0.87907 0.91985 0.82476 1.86066 1.63629 1.44213 1.44650 1.23476 0.90476 0.90243 0.96671 1.49576 1.28449 1.04914 1.51351 1.16478 0.82874 0.81581 0.79909 1.90778 1.59317 1.42588 1.52853 1.27564 1.01647 0.94521 1.06152 1.67073 1.04672 1.35076 1.08044 1.22197 0.95556 0.92583 0.99172 1.27797 1.06232 1.00590 1.13125 1.96782 1.38124 1.73522 1.76921 1.83786 1.11350 1.05899 1.39532 1.23953 1.00902 0.76066 1.00738 0.91737 0.76557 0.86916 0.91437 0.77691 0.91686 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.42 11.81 21.45 0.25 -45.17 15 2 C 0.04 1.71 5.21 84.65 0.44 2.15 15 3 Si 0.96 38.78 29.55 68.60 2.03 40.81 15 4 H -0.28 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.28 -11.36 7.11 99.48 0.71 -10.66 15 6 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 7 C -0.56 -27.09 8.65 25.60 0.22 -26.86 15 8 H 0.08 3.61 7.83 -2.91 -0.02 3.58 15 9 C 0.22 10.43 1.42 -11.14 -0.02 10.41 15 10 O -0.58 -29.36 13.57 -148.98 -2.02 -31.38 15 11 C 0.11 4.83 8.02 83.18 0.67 5.50 15 12 N -0.61 -26.55 3.69 -862.14 -3.18 -29.73 15 13 C 0.61 25.32 8.06 86.59 0.70 26.02 15 14 O -0.57 -25.58 17.71 -4.14 -0.07 -25.65 15 15 C -0.03 -0.89 7.43 87.23 0.65 -0.24 15 16 N -0.43 -14.69 9.03 -190.30 -1.72 -16.41 15 17 C 0.07 1.72 11.19 83.99 0.94 2.66 15 18 C -0.27 -6.29 6.82 66.94 0.46 -5.84 15 19 Br 0.06 1.09 34.08 -20.37 -0.69 0.39 15 20 S 0.34 8.71 23.03 -56.49 -1.30 7.41 15 21 C 0.11 4.76 7.16 83.24 0.60 5.35 15 22 H 0.27 13.04 8.31 -92.71 -0.77 12.27 15 23 H 0.38 19.65 7.09 -74.06 -0.53 19.12 15 24 H 0.11 4.27 8.10 -2.39 -0.02 4.25 15 25 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 26 H 0.21 4.24 8.06 -2.91 -0.02 4.21 15 27 H 0.06 3.10 7.45 -2.39 -0.02 3.08 15 28 H 0.08 3.69 8.10 -2.39 -0.02 3.67 15 Total: -1.00 -56.91 290.84 -1.35 -58.27 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.70 Total: 22.31 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 4.65 Total: 19.16 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -4.65 Total: -91.31 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.09 Total: -57.03 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 8.71 SS G_CDS: -1.30 Total: 7.41 kcal Atomic # 35 Polarization: 1.09 SS G_CDS: -0.69 Total: 0.39 kcal Total: -56.91 -1.35 -58.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619444094.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.624 kcal (2) G-P(sol) polarization free energy of solvation -56.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds