Wall clock time and date at job start Tue Mar 31 2020 16:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08991 * 110.27309 * 2 1 4 4 C 1.54592 * 110.38923 * 122.14879 * 2 1 3 5 5 C 1.54939 * 102.92065 * 140.91529 * 4 2 1 6 6 N 1.48529 * 103.22773 * 322.58285 * 5 4 2 7 7 C 1.46901 * 111.00334 * 159.72019 * 6 5 4 8 8 C 1.53000 * 109.46769 * 52.60118 * 7 6 5 9 9 N 1.46901 * 109.46769 * 180.02562 * 8 7 6 10 10 C 1.46906 * 110.99793 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47183 * 180.02562 * 10 9 8 12 12 C 1.38292 * 119.92326 * 269.73031 * 11 10 9 13 13 C 1.38100 * 120.07209 * 179.72597 * 12 11 10 14 14 C 1.38914 * 119.92407 * 0.53986 * 13 12 11 15 15 N 1.39675 * 120.07066 * 179.75099 * 14 13 12 16 16 C 1.46502 * 119.99791 * 179.97438 * 15 14 13 17 17 C 1.46500 * 120.00165 * 359.97438 * 15 14 13 18 18 C 1.50700 * 109.47042 * 90.00371 * 17 15 14 19 19 H 1.08005 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00004 * 179.97438 * 18 17 15 21 21 N 1.31511 * 119.99901 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47083 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46691 * 120.00318 * 22 20 18 25 25 H 1.48497 * 109.47016 * 240.00047 * 22 20 18 26 26 C 1.38906 * 119.85431 * 359.73422 * 14 13 12 27 27 C 1.38103 * 119.92348 * 359.97438 * 26 14 13 28 28 C 1.47907 * 105.82120 * 39.20674 * 6 5 4 29 29 H 1.08996 * 109.46966 * 182.08532 * 1 2 3 30 30 H 1.09005 * 109.46730 * 302.09167 * 1 2 3 31 31 H 1.08997 * 109.47213 * 62.08676 * 1 2 3 32 32 H 1.09000 * 110.72216 * 259.27244 * 4 2 1 33 33 H 1.08995 * 110.72993 * 22.37554 * 4 2 1 34 34 H 1.09002 * 110.66801 * 204.14643 * 5 4 2 35 35 H 1.09002 * 110.66599 * 81.01788 * 5 4 2 36 36 H 1.09001 * 109.46874 * 292.60398 * 7 6 5 37 37 H 1.08992 * 109.47407 * 172.60416 * 7 6 5 38 38 H 1.09002 * 109.47398 * 300.00295 * 8 7 6 39 39 H 1.09001 * 109.47194 * 60.00475 * 8 7 6 40 40 H 1.00898 * 110.99877 * 56.04956 * 9 8 7 41 41 H 1.08995 * 109.47087 * 299.99901 * 10 9 8 42 42 H 1.09002 * 109.46903 * 59.99922 * 10 9 8 43 43 H 1.07997 * 119.96063 * 359.97296 * 12 11 10 44 44 H 1.08003 * 120.03941 * 180.27013 * 13 12 11 45 45 H 1.09007 * 109.46950 * 90.00024 * 16 15 14 46 46 H 1.08995 * 109.47487 * 209.99888 * 16 15 14 47 47 H 1.08997 * 109.47333 * 330.00382 * 16 15 14 48 48 H 1.09003 * 109.46798 * 209.99928 * 17 15 14 49 49 H 1.08992 * 109.47231 * 330.00076 * 17 15 14 50 50 H 0.97005 * 119.99707 * 179.97438 * 21 20 18 51 51 H 1.07995 * 120.04355 * 180.02562 * 26 14 13 52 52 H 1.07997 * 119.96414 * 179.97438 * 27 26 14 53 53 H 1.09001 * 109.91438 * 94.01931 * 28 6 5 54 54 H 1.09003 * 109.91794 * 215.32183 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0687 -0.7711 1.2269 5 6 3.2882 -1.5327 0.6494 6 7 2.8333 -1.9216 -0.7100 7 6 3.9768 -2.2224 -1.5818 8 6 4.8836 -3.2475 -0.8979 9 7 6.0274 -3.5479 -1.7694 10 6 6.9217 -4.5315 -1.1442 11 6 8.0808 -4.8134 -2.0651 12 6 7.9921 -5.8351 -2.9928 13 6 9.0503 -6.0924 -3.8420 14 6 10.2089 -5.3309 -3.7561 15 7 11.2829 -5.5919 -4.6100 16 6 12.5038 -4.7874 -4.5183 17 6 11.1886 -6.6701 -5.5973 18 6 10.6247 -6.1250 -6.8841 19 1 10.3624 -5.0799 -6.9589 20 6 10.4436 -6.9603 -7.9660 21 7 10.7625 -8.2329 -7.8748 22 14 9.7440 -6.2847 -9.5609 23 1 9.4688 -4.8338 -9.4052 24 1 10.7254 -6.4872 -10.6568 25 1 8.4823 -6.9960 -9.8885 26 6 10.2967 -4.3091 -2.8193 27 6 9.2326 -4.0531 -1.9771 28 6 2.0645 -0.7672 -1.2236 29 1 -0.3633 -1.0270 0.0374 30 1 -0.3633 0.5460 0.8707 31 1 -0.3633 0.4811 -0.9081 32 1 2.3809 -0.0802 2.0100 33 1 1.3195 -1.4668 1.6046 34 1 3.5090 -2.4160 1.2486 35 1 4.1581 -0.8785 0.5915 36 1 4.5397 -1.3084 -1.7710 37 1 3.6163 -2.6293 -2.5265 38 1 5.2441 -2.8407 0.0469 39 1 4.3207 -4.1616 -0.7087 40 1 6.5282 -2.7061 -2.0117 41 1 7.2960 -4.1341 -0.2008 42 1 6.3727 -5.4545 -0.9574 43 1 7.0928 -6.4298 -3.0558 44 1 8.9788 -6.8877 -4.5693 45 1 13.1912 -5.2496 -3.8097 46 1 12.9765 -4.7312 -5.4989 47 1 12.2524 -3.7829 -4.1781 48 1 12.1808 -7.0822 -5.7812 49 1 10.5341 -7.4545 -5.2173 50 1 10.6348 -8.8207 -8.6358 51 1 11.1959 -3.7148 -2.7501 52 1 9.3003 -3.2591 -1.2482 53 1 2.7149 -0.1204 -1.8124 54 1 1.2326 -1.1174 -1.8347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744449865.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:33 Heat of formation + Delta-G solvation = 14.349490 kcal Electronic energy + Delta-G solvation = -27390.423643 eV Core-core repulsion = 23746.714390 eV Total energy + Delta-G solvation = -3643.709253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.48984 -40.17476 -37.96773 -36.61165 -34.83620 -34.23435 -31.88548 -31.61397 -30.59375 -29.65451 -28.91584 -27.03630 -26.05279 -25.17329 -23.72015 -23.34058 -22.99833 -21.55707 -20.97540 -20.91670 -18.64308 -18.14362 -17.13239 -17.04970 -16.81969 -16.76086 -16.07749 -15.86952 -15.43119 -15.32678 -15.16211 -14.96445 -14.65841 -14.41606 -14.29643 -14.25093 -14.07351 -13.96418 -13.55744 -13.20845 -13.18084 -13.10097 -12.98360 -12.84976 -12.67190 -12.55347 -12.47912 -12.30037 -12.16836 -12.00464 -11.88974 -11.73663 -11.65013 -11.56308 -11.46052 -11.40478 -10.65127 -10.42295 -9.66701 -9.40545 -9.29168 -8.36766 -7.80397 -6.37885 0.71413 0.83385 1.35247 1.37231 1.49326 2.33869 2.63390 2.81678 3.05548 3.14411 3.55485 3.74176 3.76840 3.93774 4.05025 4.06887 4.17894 4.21301 4.24605 4.35185 4.43594 4.47277 4.50811 4.56493 4.62252 4.64340 4.66306 4.72461 4.75391 4.82118 4.87134 4.90488 4.91239 4.96701 5.00809 5.02552 5.05041 5.12562 5.14814 5.21005 5.21176 5.25749 5.33168 5.43775 5.59347 5.65825 5.70004 5.91868 5.94733 6.02400 6.06842 6.14020 6.23235 6.49149 6.50049 6.82663 6.93936 7.33990 8.82790 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.001901 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.622798 B =14722.982764 C =15942.166432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.031 3.969 6 N -0.528 5.528 7 C 0.055 3.945 8 C 0.070 3.930 9 N -0.697 5.697 10 C 0.124 3.876 11 C -0.160 4.160 12 C -0.056 4.056 13 C -0.218 4.218 14 C 0.212 3.788 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.266 3.734 18 C -0.541 4.541 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.277 1.277 26 C -0.217 4.217 27 C -0.061 4.061 28 C 0.036 3.964 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.343 0.657 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.010 0.990 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.134 0.866 52 H 0.143 0.857 53 H 0.042 0.958 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 17.043 20.135 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.097 4.097 6 N -0.252 5.252 7 C -0.074 4.074 8 C -0.060 4.060 9 N -0.329 5.329 10 C -0.004 4.004 11 C -0.162 4.162 12 C -0.076 4.076 13 C -0.241 4.241 14 C 0.108 3.892 15 N -0.339 5.339 16 C -0.045 4.045 17 C 0.144 3.856 18 C -0.580 4.580 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.203 1.203 26 C -0.240 4.240 27 C -0.080 4.080 28 C -0.091 4.091 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.161 0.839 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.028 0.972 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.152 0.848 52 H 0.161 0.839 53 H 0.060 0.940 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.131 15.885 19.541 29.379 hybrid contribution 0.908 0.831 -0.982 1.575 sum -14.223 16.716 18.559 28.743 Atomic orbital electron populations 1.21795 0.93677 1.01945 1.02175 1.22015 0.97053 0.99066 0.94066 0.90258 1.22590 0.96997 0.98812 0.97124 1.23298 0.96996 0.99248 0.90147 1.64766 1.20759 1.36890 1.02834 1.22150 0.90980 0.97460 0.96780 1.21877 0.91529 0.98853 0.93695 1.60369 1.11218 1.16181 1.45104 1.20573 0.90327 0.96157 0.93344 1.19510 0.96425 0.99210 1.01100 1.20797 0.96435 0.96860 0.93468 1.20790 0.95155 1.03973 1.04146 1.18237 0.87669 0.93638 0.89703 1.46962 1.14092 1.36476 1.36414 1.21604 0.86063 0.95402 1.01424 1.18775 0.95497 0.85398 0.85915 1.21809 1.42629 0.95562 0.97959 0.93313 1.25784 0.95682 0.95017 1.02261 1.70043 1.48989 1.05074 1.32466 0.85452 0.78255 0.78496 0.79148 1.19557 1.19882 1.20293 1.20787 1.01977 1.00953 1.00253 1.20921 0.91678 0.97984 0.97371 1.23027 0.97883 0.90822 0.97409 0.92810 0.91768 0.92367 0.89861 0.90708 0.89841 0.93745 0.94713 0.91095 0.94291 0.91043 0.83910 0.93283 0.90781 0.86255 0.88799 0.92889 0.92555 0.90295 0.97232 0.97137 0.92398 0.84836 0.83886 0.93987 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.90 71.99 0.64 -0.71 16 2 C -0.10 -1.16 3.58 -9.91 -0.04 -1.20 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -1.28 6.61 31.80 0.21 -1.07 16 5 C 0.03 0.41 5.10 86.65 0.44 0.86 16 6 N -0.53 -8.93 5.40 -883.00 -4.76 -13.70 16 7 C 0.05 1.00 5.29 86.30 0.46 1.45 16 8 C 0.07 1.26 5.34 86.30 0.46 1.72 16 9 N -0.70 -15.11 6.49 -517.91 -3.36 -18.47 16 10 C 0.12 2.76 5.81 85.56 0.50 3.26 16 11 C -0.16 -4.60 5.40 -19.84 -0.11 -4.71 16 12 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 13 C -0.22 -9.35 9.21 22.40 0.21 -9.15 16 14 C 0.21 8.78 6.55 38.21 0.25 9.03 16 15 N -0.63 -28.01 2.99 -726.57 -2.17 -30.18 16 16 C 0.10 3.42 10.19 127.77 1.30 4.72 16 17 C 0.27 14.20 4.91 85.63 0.42 14.62 16 18 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 19 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 20 C 0.01 0.67 5.46 84.66 0.46 1.13 16 21 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 22 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C -0.22 -7.11 9.21 22.40 0.21 -6.90 16 27 C -0.06 -1.67 9.69 22.25 0.22 -1.45 16 28 C 0.04 0.54 6.36 86.45 0.55 1.09 16 29 H 0.05 0.60 8.11 -2.39 -0.02 0.58 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.85 7.85 -2.39 -0.02 0.83 16 34 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 35 H 0.04 0.59 8.00 -2.39 -0.02 0.57 16 36 H 0.03 0.62 7.81 -2.39 -0.02 0.60 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 0.62 6.79 -2.39 -0.02 0.60 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.34 7.11 8.72 -89.70 -0.78 6.33 16 41 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 42 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 43 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 44 H 0.09 4.66 6.14 -2.91 -0.02 4.64 16 45 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 47 H 0.08 2.32 6.20 -2.39 -0.01 2.31 16 48 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 49 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 50 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 51 H 0.13 3.75 6.14 -2.91 -0.02 3.73 16 52 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 53 H 0.04 0.63 7.57 -2.39 -0.02 0.61 16 54 H 0.08 1.18 7.68 -2.39 -0.02 1.16 16 Total: -1.00 -64.55 422.13 -1.28 -65.83 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.07 Total: 24.12 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 6.63 Total: -19.75 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -10.01 Total: -117.08 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.55 -1.28 -65.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744449865.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.180 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds