Wall clock time and date at job start Tue Mar 31 2020 16:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.87979 * 2 1 4 4 C 1.55149 * 110.98608 * 236.15861 * 2 1 3 5 5 C 1.54325 * 103.01512 * 206.21908 * 4 2 1 6 6 N 1.47440 * 107.23555 * 22.28413 * 5 4 2 7 7 C 1.46894 * 111.00044 * 123.25376 * 6 5 4 8 8 C 1.53006 * 109.47117 * 69.87494 * 7 6 5 9 9 N 1.46894 * 109.47507 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00123 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47158 * 180.02562 * 10 9 8 12 12 C 1.38288 * 119.92272 * 269.99826 * 11 10 9 13 13 C 1.38104 * 120.07208 * 180.02562 * 12 11 10 14 14 C 1.38915 * 119.92359 * 359.97438 * 13 12 11 15 15 N 1.39678 * 120.06984 * 179.97438 * 14 13 12 16 16 C 1.46500 * 120.00138 * 0.02562 * 15 14 13 17 17 C 1.46498 * 119.99677 * 180.02562 * 15 14 13 18 18 C 1.50705 * 109.46994 * 90.00160 * 17 15 14 19 19 H 1.07998 * 120.00121 * 0.02562 * 18 17 15 20 20 C 1.37872 * 119.99774 * 179.97438 * 18 17 15 21 21 N 1.31512 * 119.99944 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00460 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47419 * 89.99441 * 22 20 18 24 24 H 1.48497 * 109.47134 * 209.99996 * 22 20 18 25 25 H 1.48503 * 109.46709 * 329.99763 * 22 20 18 26 26 C 1.38907 * 119.85213 * 0.02562 * 14 13 12 27 27 C 1.38100 * 119.92826 * 359.97438 * 26 14 13 28 28 C 1.47846 * 108.56850 * 0.98847 * 6 5 4 29 29 H 1.08996 * 109.47726 * 182.38709 * 1 2 3 30 30 H 1.09009 * 109.46822 * 302.38809 * 1 2 3 31 31 H 1.08996 * 109.47129 * 62.38300 * 1 2 3 32 32 H 1.08997 * 110.70462 * 87.83873 * 4 2 1 33 33 H 1.09004 * 110.70500 * 324.60132 * 4 2 1 34 34 H 1.09004 * 109.88422 * 262.87677 * 5 4 2 35 35 H 1.09003 * 109.88202 * 141.68919 * 5 4 2 36 36 H 1.08998 * 109.47333 * 309.87757 * 7 6 5 37 37 H 1.09002 * 109.47499 * 189.87348 * 7 6 5 38 38 H 1.09007 * 109.46550 * 59.99943 * 8 7 6 39 39 H 1.09002 * 109.46816 * 300.00272 * 8 7 6 40 40 H 1.00905 * 110.99911 * 56.04400 * 9 8 7 41 41 H 1.08996 * 109.46927 * 59.99553 * 10 9 8 42 42 H 1.09001 * 109.46495 * 299.99413 * 10 9 8 43 43 H 1.08001 * 119.96216 * 359.97438 * 12 11 10 44 44 H 1.07998 * 120.03841 * 180.27533 * 13 12 11 45 45 H 1.09001 * 109.47288 * 89.99580 * 16 15 14 46 46 H 1.08994 * 109.46748 * 209.99704 * 16 15 14 47 47 H 1.09004 * 109.46919 * 329.99630 * 16 15 14 48 48 H 1.08995 * 109.47144 * 210.00116 * 17 15 14 49 49 H 1.09000 * 109.47505 * 329.99967 * 17 15 14 50 50 H 0.97001 * 120.00260 * 180.02562 * 21 20 18 51 51 H 1.08007 * 120.03789 * 179.97438 * 26 14 13 52 52 H 1.07997 * 119.96581 * 180.02562 * 27 26 14 53 53 H 1.09002 * 110.37491 * 94.72883 * 28 6 5 54 54 H 1.08993 * 110.37646 * 217.07357 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2032 5 6 3.4696 -1.2701 -0.7015 6 7 3.4322 -1.2413 0.7722 7 6 3.7628 -2.5581 1.3330 8 6 5.2446 -2.8561 1.0957 9 7 5.5755 -4.1726 1.6570 10 6 6.9938 -4.4929 1.4478 11 6 7.2948 -5.8478 2.0350 12 6 7.7034 -5.9536 3.3519 13 6 7.9806 -7.1936 3.8929 14 6 7.8480 -8.3354 3.1129 15 7 8.1281 -9.5910 3.6568 16 6 8.5616 -9.7050 5.0516 17 6 7.9883 -10.7940 2.8326 18 6 9.2949 -11.0824 2.1391 19 1 10.1445 -10.4347 2.2970 20 6 9.4058 -12.1738 1.3040 21 7 10.5461 -12.4258 0.6993 22 14 7.9365 -13.2947 1.0315 23 1 7.1462 -12.8025 -0.1253 24 1 8.4110 -14.6746 0.7557 25 1 7.0843 -13.2981 2.2476 26 6 7.4374 -8.2254 1.7904 27 6 7.1619 -6.9824 1.2556 28 6 2.0858 -0.8060 1.2005 29 1 -0.3634 -1.0267 0.0428 30 1 -0.3633 0.5505 0.8679 31 1 -0.3633 0.4764 -0.9105 32 1 2.1878 -0.1685 -2.0808 33 1 1.4477 -1.6634 -1.4203 34 1 4.2420 -0.5930 -1.0662 35 1 3.6688 -2.2844 -1.0476 36 1 3.1562 -3.3226 0.8474 37 1 3.5590 -2.5586 2.4038 38 1 5.8512 -2.0916 1.5813 39 1 5.4483 -2.8556 0.0249 40 1 4.9814 -4.8905 1.2698 41 1 7.6122 -3.7394 1.9357 42 1 7.2099 -4.5042 0.3795 43 1 7.8066 -5.0654 3.9576 44 1 8.2953 -7.2760 4.9227 45 1 7.6894 -9.8229 5.6947 46 1 9.2128 -10.5722 5.1599 47 1 9.1050 -8.8045 5.3379 48 1 7.7188 -11.6391 3.4659 49 1 7.2087 -10.6354 2.0874 50 1 10.6242 -13.1935 0.1114 51 1 7.3337 -9.1111 1.1811 52 1 6.8422 -6.8962 0.2276 53 1 1.4536 -1.6707 1.4022 54 1 2.1553 -0.1714 2.0840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744449866.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:37 Heat of formation + Delta-G solvation = 16.523782 kcal Electronic energy + Delta-G solvation = -27338.048447 eV Core-core repulsion = 23694.433479 eV Total energy + Delta-G solvation = -3643.614968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.51347 -40.16976 -38.00180 -36.61019 -34.78610 -34.20938 -32.00087 -31.72136 -30.61453 -30.11199 -28.93847 -27.10242 -26.05130 -25.02409 -23.56966 -23.31363 -22.84026 -21.57447 -21.09133 -20.83201 -19.08897 -18.19331 -17.40961 -17.03131 -16.78153 -16.49084 -16.30593 -15.91025 -15.43446 -15.26548 -15.01077 -14.83948 -14.69225 -14.53696 -14.42711 -14.34978 -14.19058 -13.85018 -13.67052 -13.36309 -13.27342 -13.20645 -13.03678 -12.98695 -12.61860 -12.48753 -12.41762 -12.31135 -12.05642 -11.93855 -11.90402 -11.77982 -11.75221 -11.51512 -11.48454 -11.44463 -10.83398 -10.43203 -9.68337 -9.35619 -9.28561 -8.34407 -7.92012 -6.39860 0.69381 0.81482 1.33437 1.34163 1.44979 2.29503 2.53816 2.78000 2.99420 3.12319 3.54180 3.71158 3.76904 3.95510 4.02346 4.07532 4.18941 4.20674 4.25448 4.32406 4.39471 4.47303 4.50063 4.55854 4.60828 4.61752 4.68767 4.71223 4.74669 4.80819 4.81526 4.82636 4.84583 4.90044 4.95977 4.99596 5.00929 5.05718 5.08030 5.09211 5.21929 5.27603 5.29575 5.44401 5.44723 5.59064 5.63662 5.90455 5.98931 6.04589 6.08805 6.14383 6.22576 6.46155 6.59027 6.69131 6.86420 7.25739 8.82990 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.001790 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.860564 B =15635.794590 C =16316.517692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.136 4.136 5 C 0.037 3.963 6 N -0.540 5.540 7 C 0.061 3.939 8 C 0.071 3.929 9 N -0.689 5.689 10 C 0.122 3.878 11 C -0.158 4.158 12 C -0.050 4.050 13 C -0.217 4.217 14 C 0.211 3.789 15 N -0.628 5.628 16 C 0.096 3.904 17 C 0.232 3.768 18 C -0.537 4.537 19 H 0.025 0.975 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.946 3.054 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.243 1.243 26 C -0.216 4.216 27 C -0.069 4.069 28 C 0.045 3.955 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.340 0.660 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.035 0.965 49 H 0.029 0.971 50 H 0.268 0.732 51 H 0.102 0.898 52 H 0.125 0.875 53 H 0.046 0.954 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 24.459 0.615 31.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.175 4.175 5 C -0.090 4.090 6 N -0.265 5.265 7 C -0.067 4.067 8 C -0.058 4.058 9 N -0.320 5.320 10 C -0.006 4.006 11 C -0.161 4.161 12 C -0.069 4.069 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.336 5.336 16 C -0.046 4.046 17 C 0.109 3.891 18 C -0.576 4.576 19 H 0.043 0.957 20 C -0.186 4.186 21 N -0.586 5.586 22 Si 0.769 3.231 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.167 1.167 26 C -0.239 4.239 27 C -0.088 4.088 28 C -0.082 4.082 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.158 0.842 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.047 0.953 50 H 0.077 0.923 51 H 0.120 0.880 52 H 0.143 0.857 53 H 0.064 0.936 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.796 24.725 1.433 31.092 hybrid contribution -0.282 -1.959 -1.691 2.603 sum -19.079 22.767 -0.258 29.705 Atomic orbital electron populations 1.21695 0.93460 1.01967 1.02558 1.22291 0.96334 0.99448 0.93776 0.89773 1.22861 0.95725 1.00119 0.98752 1.22896 0.98107 1.00690 0.87341 1.63474 1.28157 1.26492 1.08346 1.22100 0.95289 0.88940 1.00418 1.21820 0.95973 0.91062 0.96945 1.60453 1.04300 1.04083 1.63178 1.20584 0.89219 0.92998 0.97792 1.19518 1.07264 0.94420 0.94898 1.20891 0.95141 0.96479 0.94412 1.20827 1.10978 0.91329 1.00808 1.18219 0.92556 0.85819 0.92712 1.46690 1.71375 1.03693 1.11855 1.21637 0.99479 1.02395 0.81115 1.19334 0.94921 0.83999 0.90837 1.21678 0.97708 1.10888 1.27346 0.95709 1.25869 0.99025 0.99006 0.94690 1.70065 1.27441 1.29776 1.31273 0.85734 0.79300 0.77924 0.80159 1.19012 1.20533 1.16679 1.20781 1.09712 0.98452 0.94972 1.20852 0.97411 0.91260 0.99299 1.23142 0.87856 0.98500 0.98744 0.92902 0.91840 0.91726 0.89809 0.91537 0.90549 0.93058 0.95008 0.90485 0.90712 0.95399 0.84186 0.89920 0.94665 0.84308 0.84982 0.92024 0.92553 0.90791 0.94658 0.95279 0.92313 0.88038 0.85747 0.93587 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.30 71.98 0.67 -0.49 16 2 C -0.10 -1.06 3.63 -9.40 -0.03 -1.10 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.14 -1.51 6.41 31.78 0.20 -1.30 16 5 C 0.04 0.52 6.20 86.65 0.54 1.06 16 6 N -0.54 -8.57 5.16 -885.53 -4.57 -13.14 16 7 C 0.06 1.02 4.80 86.31 0.41 1.43 16 8 C 0.07 1.27 5.72 86.31 0.49 1.77 16 9 N -0.69 -14.20 6.49 -517.92 -3.36 -17.56 16 10 C 0.12 2.75 5.81 85.56 0.50 3.25 16 11 C -0.16 -4.53 5.40 -19.84 -0.11 -4.64 16 12 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16 13 C -0.22 -7.19 9.20 22.40 0.21 -6.98 16 14 C 0.21 8.45 6.55 38.21 0.25 8.70 16 15 N -0.63 -26.49 2.99 -726.56 -2.17 -28.66 16 16 C 0.10 3.26 10.19 127.77 1.30 4.56 16 17 C 0.23 11.04 3.98 85.63 0.34 11.38 16 18 C -0.54 -31.07 9.94 25.60 0.25 -30.82 16 19 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 20 C 0.01 0.70 5.47 84.65 0.46 1.16 16 21 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 22 Si 0.95 42.99 27.47 68.60 1.88 44.88 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 26 C -0.22 -8.72 9.21 22.40 0.21 -8.51 16 27 C -0.07 -2.27 9.69 22.25 0.22 -2.05 16 28 C 0.04 0.60 6.15 86.77 0.53 1.13 16 29 H 0.05 0.47 8.10 -2.39 -0.02 0.45 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.04 -2.38 -0.02 0.73 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 0.75 6.91 -2.39 -0.02 0.73 16 36 H 0.03 0.54 7.96 -2.39 -0.02 0.52 16 37 H 0.08 1.38 8.07 -2.39 -0.02 1.36 16 38 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.03 0.50 7.14 -2.39 -0.02 0.48 16 40 H 0.34 7.02 8.72 -89.69 -0.78 6.24 16 41 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 42 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 44 H 0.13 3.82 6.15 -2.91 -0.02 3.80 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 47 H 0.07 2.21 6.20 -2.39 -0.01 2.19 16 48 H 0.04 1.62 7.13 -2.39 -0.02 1.60 16 49 H 0.03 1.38 5.63 -2.39 -0.01 1.36 16 50 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 51 H 0.10 4.52 6.14 -2.91 -0.02 4.50 16 52 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 53 H 0.05 0.63 7.68 -2.39 -0.02 0.61 16 54 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -66.87 419.89 -1.24 -68.11 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.02 Total: 27.78 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 6.66 Total: -22.68 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -9.80 Total: -118.09 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.88 kcal Total: -66.87 -1.24 -68.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744449866.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.633 kcal (2) G-P(sol) polarization free energy of solvation -66.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds