Wall clock time and date at job start Tue Mar 31 2020 16:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47010 * 269.99925 * 3 2 1 5 5 H 1.48506 * 109.47036 * 30.00222 * 3 2 1 6 6 H 1.48498 * 109.46780 * 149.99681 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99834 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.38453 * 119.99868 * 180.27735 * 14 13 11 16 16 N 1.32486 * 119.20224 * 359.45415 * 15 14 13 17 17 C 1.32284 * 120.74125 * 179.76162 * 16 15 14 18 18 C 1.38678 * 119.18938 * 0.49912 * 17 16 15 19 19 Br 1.89103 * 120.72821 * 179.72907 * 18 17 16 20 20 C 1.38670 * 118.53887 * 359.75575 * 18 17 16 21 21 N 1.32278 * 119.18671 * 359.97438 * 20 18 17 22 22 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46967 * 59.99619 * 10 9 7 24 24 H 1.09007 * 109.46677 * 300.00127 * 10 9 7 25 25 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 26 26 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 27 27 H 1.08004 * 120.40226 * 180.25110 * 17 16 15 28 28 H 1.07999 * 120.40873 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 7 2.3529 -7.6552 -0.0029 15 6 3.2331 -8.7239 0.0022 16 7 4.5367 -8.4877 -0.0028 17 6 5.4048 -9.4859 0.0066 18 6 4.9350 -10.7907 0.0114 19 35 6.1372 -12.2504 0.0171 20 6 3.5644 -11.0014 0.0112 21 7 2.7514 -9.9580 0.0071 22 1 -0.4850 0.8401 0.0004 23 1 3.1245 -3.7313 0.8894 24 1 3.1245 -3.7313 -0.8906 25 1 3.8010 -6.1835 -0.0015 26 1 1.3961 -7.8147 -0.0029 27 1 6.4663 -9.2870 0.0065 28 1 3.1657 -12.0051 0.0145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848320770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:44 Heat of formation + Delta-G solvation = 62.460098 kcal Electronic energy + Delta-G solvation = -16702.985300 eV Core-core repulsion = 13542.663232 eV Total energy + Delta-G solvation = -3160.322068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.968 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.44925 -39.51588 -36.34720 -34.24124 -33.33669 -32.49958 -31.61527 -29.63241 -28.01522 -25.56352 -25.24870 -23.50010 -21.27724 -19.26165 -18.43897 -17.69626 -16.87873 -16.33134 -15.91597 -15.61298 -15.09994 -14.86322 -14.69696 -14.27369 -14.03184 -13.50738 -12.94605 -12.69575 -12.15031 -11.60463 -11.38576 -11.26096 -11.12322 -11.08793 -10.96434 -10.83815 -9.92294 -9.88130 -9.67804 -9.61157 -9.13103 -8.36370 -7.99046 -6.60419 -6.28835 -4.01091 0.47632 0.64799 1.11032 1.49029 2.74328 3.05896 3.19005 3.25139 3.28856 3.33419 3.45503 3.84170 4.08445 4.12607 4.47171 4.50077 4.91046 5.07006 5.19718 5.44471 5.67619 5.69902 5.97683 6.23712 6.56790 6.82409 7.39222 7.53392 7.73737 8.28195 8.35207 9.16774 10.78576 Molecular weight = 331.97amu Principal moments of inertia in cm(-1) A = 0.044061 B = 0.001952 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.334770 B =14343.955409 C =14964.128450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.050 6.050 10 C -0.143 4.143 11 C 0.535 3.465 12 O -0.512 6.512 13 N -0.520 5.520 14 N -0.477 5.477 15 C 0.579 3.421 16 N -0.567 5.567 17 C 0.238 3.762 18 C -0.278 4.278 19 Br -0.027 7.027 20 C 0.239 3.761 21 N -0.558 5.558 22 H 0.270 0.730 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.432 0.568 26 H 0.450 0.550 27 H 0.178 0.822 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.684 -25.824 0.044 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.176 5.824 10 C -0.295 4.295 11 C 0.321 3.679 12 O -0.384 6.384 13 N -0.272 5.272 14 N -0.205 5.205 15 C 0.221 3.779 16 N -0.291 5.291 17 C 0.067 3.933 18 C -0.367 4.367 19 Br 0.056 6.944 20 C 0.068 3.932 21 N -0.282 5.282 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.275 0.725 26 H 0.296 0.704 27 H 0.195 0.805 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.266 -25.496 0.036 28.293 hybrid contribution 2.356 0.808 0.001 2.490 sum 14.621 -24.688 0.038 28.693 Atomic orbital electron populations 1.70009 1.05995 1.27645 1.46571 1.24995 0.95035 0.99087 0.94336 0.86141 0.79414 0.81382 0.78417 1.20202 1.20707 1.19611 1.22866 0.95027 0.91390 1.59407 0.90658 1.85480 1.03945 0.96185 1.96796 1.23481 1.07343 0.92784 1.05879 1.20782 0.86433 0.85192 0.75496 1.90747 1.14996 1.84845 1.47807 1.45217 1.10646 0.92855 1.78499 1.42682 1.07623 0.93519 1.76678 1.19036 0.85527 0.85361 0.87933 1.67929 1.01529 1.36293 1.23372 1.22970 0.99776 0.85642 0.84864 1.23191 0.96542 0.95532 1.21440 1.96727 1.59263 1.40294 1.98129 1.22972 0.87430 0.97734 0.85057 1.67884 1.39622 0.97564 1.23100 0.92057 0.88330 0.88332 0.72502 0.70360 0.80498 0.80405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.49 0.73 -24.79 15 2 C 0.08 2.08 5.49 -17.43 -0.10 1.99 15 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 15 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.54 -14.80 9.50 30.94 0.29 -14.50 15 8 H 0.08 1.94 7.80 -52.49 -0.41 1.53 15 9 S -0.05 -1.30 20.57 -107.50 -2.21 -3.51 15 10 C -0.14 -2.68 6.16 36.01 0.22 -2.46 15 11 C 0.53 9.41 7.96 -10.99 -0.09 9.33 15 12 O -0.51 -10.88 15.70 5.56 0.09 -10.79 15 13 N -0.52 -7.18 6.28 31.22 0.20 -6.98 15 14 N -0.48 -6.33 6.42 29.77 0.19 -6.14 15 15 C 0.58 7.03 8.54 -322.77 -2.76 4.27 15 16 N -0.57 -6.20 9.38 -13.90 -0.13 -6.33 15 17 C 0.24 1.99 11.08 -17.19 -0.19 1.80 15 18 C -0.28 -2.18 6.27 -39.26 -0.25 -2.42 15 19 Br -0.03 -0.17 33.76 -68.01 -2.30 -2.47 15 20 C 0.24 2.00 11.08 -17.20 -0.19 1.81 15 21 N -0.56 -6.21 10.46 -13.91 -0.15 -6.36 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.10 1.67 8.14 -51.92 -0.42 1.25 15 24 H 0.10 1.67 8.14 -51.91 -0.42 1.24 15 25 H 0.43 5.05 7.91 -182.59 -1.44 3.61 15 26 H 0.45 6.10 8.12 -182.59 -1.48 4.62 15 27 H 0.18 0.97 8.06 -52.48 -0.42 0.55 15 28 H 0.18 0.96 8.06 -52.49 -0.42 0.53 15 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -32.74 297.28 -11.33 -44.07 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.16 Total: 3.17 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.05 Total: -0.19 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.85 Total: -50.60 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.21 Total: -3.51 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.47 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.74 -11.33 -44.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848320770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.533 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds