Wall clock time and date at job start Tue Mar 31 2020 16:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47010 * 269.99925 * 3 2 1 5 5 H 1.48506 * 109.47036 * 30.00222 * 3 2 1 6 6 H 1.48498 * 109.46780 * 149.99681 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99834 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.38453 * 119.99868 * 180.27735 * 14 13 11 16 16 N 1.32486 * 119.20224 * 359.45415 * 15 14 13 17 17 C 1.32284 * 120.74125 * 179.76162 * 16 15 14 18 18 C 1.38678 * 119.18938 * 0.49912 * 17 16 15 19 19 Br 1.89103 * 120.72821 * 179.72907 * 18 17 16 20 20 C 1.38670 * 118.53887 * 359.75575 * 18 17 16 21 21 N 1.32278 * 119.18671 * 359.97438 * 20 18 17 22 22 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46967 * 59.99619 * 10 9 7 24 24 H 1.09007 * 109.46677 * 300.00127 * 10 9 7 25 25 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 26 26 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 27 27 H 1.08004 * 120.40226 * 180.25110 * 17 16 15 28 28 H 1.07999 * 120.40873 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 7 2.3529 -7.6552 -0.0029 15 6 3.2331 -8.7239 0.0022 16 7 4.5367 -8.4877 -0.0028 17 6 5.4048 -9.4859 0.0066 18 6 4.9350 -10.7907 0.0114 19 35 6.1372 -12.2504 0.0171 20 6 3.5644 -11.0014 0.0112 21 7 2.7514 -9.9580 0.0071 22 1 -0.4850 0.8401 0.0004 23 1 3.1245 -3.7313 0.8894 24 1 3.1245 -3.7313 -0.8906 25 1 3.8010 -6.1835 -0.0015 26 1 1.3961 -7.8147 -0.0029 27 1 6.4663 -9.2870 0.0065 28 1 3.1657 -12.0051 0.0145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848320770.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:44 Heat of formation + Delta-G solvation = 40.973359 kcal Electronic energy + Delta-G solvation = -16703.917035 eV Core-core repulsion = 13542.663232 eV Total energy + Delta-G solvation = -3161.253803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.968 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.25160 -40.83067 -37.46290 -35.01218 -34.57917 -34.25157 -32.64102 -30.69058 -29.08269 -27.63750 -25.99317 -24.33518 -22.54086 -20.40085 -19.65792 -19.22049 -17.99894 -17.34988 -16.95937 -16.86709 -16.47774 -16.28135 -16.10204 -15.46217 -15.01038 -14.66846 -14.52654 -14.09177 -13.34235 -13.16486 -12.88249 -12.63403 -12.34082 -12.16877 -12.13052 -11.75826 -11.55065 -11.35492 -11.13374 -10.51212 -10.36713 -10.29921 -8.97781 -8.66492 -8.34429 -6.12606 -0.28724 -0.04918 0.28215 0.57633 1.33977 1.37087 1.44486 1.51903 1.62384 2.26808 2.41628 2.55125 3.00769 3.04928 3.21626 3.46218 3.54609 3.81059 3.93372 4.24957 4.47817 4.57157 4.85987 5.31718 5.44136 5.69803 5.82052 6.20990 6.30076 6.78609 7.07740 7.17216 8.74693 Molecular weight = 331.97amu Principal moments of inertia in cm(-1) A = 0.044061 B = 0.001952 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.334770 B =14343.955409 C =14964.128450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.087 0.913 9 S -0.139 6.139 10 C -0.119 4.119 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.497 5.497 14 N -0.489 5.489 15 C 0.566 3.434 16 N -0.578 5.578 17 C 0.233 3.767 18 C -0.269 4.269 19 Br -0.006 7.006 20 C 0.233 3.767 21 N -0.574 5.574 22 H 0.271 0.729 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.444 0.556 26 H 0.446 0.554 27 H 0.207 0.793 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.608 -26.897 0.052 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.105 0.895 9 S 0.088 5.912 10 C -0.271 4.271 11 C 0.326 3.674 12 O -0.431 6.431 13 N -0.248 5.248 14 N -0.219 5.219 15 C 0.209 3.791 16 N -0.302 5.302 17 C 0.064 3.936 18 C -0.357 4.357 19 Br 0.077 6.923 20 C 0.064 3.936 21 N -0.298 5.298 22 H 0.080 0.920 23 H 0.140 0.860 24 H 0.140 0.860 25 H 0.289 0.711 26 H 0.291 0.709 27 H 0.223 0.777 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 15.287 -26.652 0.044 30.725 hybrid contribution 1.610 0.828 -0.002 1.811 sum 16.898 -25.824 0.043 30.861 Atomic orbital electron populations 1.70174 1.07989 1.28657 1.48008 1.26094 0.95900 1.03248 0.93687 0.84967 0.78266 0.76086 0.78761 1.19383 1.20503 1.18063 1.23236 0.95589 0.91783 1.58899 0.89454 1.85638 1.09521 0.98932 1.97111 1.23253 1.04241 0.91549 1.08082 1.20405 0.85961 0.85557 0.75513 1.90735 1.16786 1.85354 1.50267 1.44685 1.10536 0.93052 1.76537 1.42665 1.07723 0.93066 1.78488 1.19112 0.85886 0.85360 0.88742 1.67944 1.01187 1.37387 1.23725 1.23513 1.00706 0.85443 0.83962 1.23350 0.96780 0.96127 1.19429 1.96773 1.58418 1.39142 1.97981 1.23509 0.87699 0.98170 0.84184 1.67886 1.40625 0.97726 1.23564 0.91984 0.86021 0.86007 0.71085 0.70857 0.77657 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.86 13.22 21.65 0.29 -54.57 15 2 C 0.02 0.87 5.49 84.86 0.47 1.33 15 3 Si 1.00 42.47 29.55 68.60 2.03 44.50 15 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 15 7 C -0.55 -30.09 9.50 67.95 0.65 -29.44 15 8 H 0.09 4.41 7.80 -2.91 -0.02 4.38 15 9 S -0.14 -7.36 20.57 -56.49 -1.16 -8.53 15 10 C -0.12 -4.36 6.16 71.24 0.44 -3.92 15 11 C 0.54 18.94 7.96 87.66 0.70 19.63 15 12 O -0.56 -24.29 15.70 -3.01 -0.05 -24.34 15 13 N -0.50 -13.30 6.28 -173.54 -1.09 -14.39 15 14 N -0.49 -12.86 6.42 -59.73 -0.38 -13.25 15 15 C 0.57 13.18 8.54 261.47 2.23 15.42 15 16 N -0.58 -11.59 9.38 -197.90 -1.86 -13.45 15 17 C 0.23 3.30 11.08 84.73 0.94 4.24 15 18 C -0.27 -3.52 6.27 22.48 0.14 -3.38 15 19 Br -0.01 -0.06 33.76 -20.37 -0.69 -0.75 15 20 C 0.23 3.43 11.08 84.73 0.94 4.36 15 21 N -0.57 -12.14 10.46 -197.91 -2.07 -14.21 15 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 23 H 0.12 3.91 8.14 -2.39 -0.02 3.89 15 24 H 0.12 3.91 8.14 -2.39 -0.02 3.89 15 25 H 0.44 9.63 7.91 -213.31 -1.69 7.95 15 26 H 0.45 12.38 8.12 -213.31 -1.73 10.65 15 27 H 0.21 1.58 8.06 -2.91 -0.02 1.55 15 28 H 0.21 1.68 8.06 -2.91 -0.02 1.65 15 Total: -1.00 -72.51 297.28 -0.66 -73.17 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -2.18 Total: 17.57 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.50 Total: 8.24 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -5.11 Total: -109.87 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.16 Total: -8.53 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.69 Total: -0.75 kcal Total: -72.51 -0.66 -73.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848320770.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.148 kcal (2) G-P(sol) polarization free energy of solvation -72.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds