Wall clock time and date at job start Tue Mar 31 2020 16:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46895 * 109.47259 * 65.00243 * 13 2 1 15 15 C 1.46902 * 111.00052 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.38284 * 119.92557 * 269.72903 * 16 15 14 18 18 C 1.38104 * 120.07522 * 179.72730 * 17 16 15 19 19 C 1.38912 * 119.92416 * 0.54263 * 18 17 16 20 20 N 1.39680 * 120.07571 * 179.75408 * 19 18 17 21 21 C 1.46951 * 110.99976 * 123.77251 * 20 19 18 22 22 C 1.53058 * 109.36248 * 176.81185 * 21 20 19 23 23 N 1.46954 * 109.36271 * 58.40070 * 22 21 20 24 24 C 1.46896 * 110.99660 * 176.81182 * 23 22 21 25 25 C 1.46948 * 110.88169 * 300.68111 * 23 22 21 26 26 C 1.46954 * 110.99709 * 359.97223 * 20 19 18 27 27 C 1.38908 * 119.85132 * 359.72448 * 19 18 17 28 28 C 1.38110 * 119.92633 * 0.02562 * 27 19 18 29 29 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 31 31 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 32 32 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 33 33 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 34 34 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 35 35 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 36 36 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 37 37 H 1.00894 * 110.99896 * 56.04225 * 14 13 2 38 38 H 1.08999 * 109.46615 * 299.99647 * 15 14 13 39 39 H 1.08994 * 109.47343 * 59.99891 * 15 14 13 40 40 H 1.07996 * 119.95942 * 359.96745 * 17 16 15 41 41 H 1.08004 * 120.03734 * 180.26807 * 18 17 16 42 42 H 1.08999 * 109.49634 * 296.77815 * 21 20 19 43 43 H 1.08998 * 109.49180 * 56.84483 * 21 20 19 44 44 H 1.08997 * 109.48697 * 298.43525 * 22 21 20 45 45 H 1.08996 * 109.48475 * 178.37167 * 22 21 20 46 46 H 1.09004 * 109.47285 * 183.80090 * 24 23 22 47 47 H 1.09000 * 109.47546 * 303.79836 * 24 23 22 48 48 H 1.09003 * 109.47077 * 63.80030 * 24 23 22 49 49 H 1.08999 * 109.49374 * 299.35398 * 25 23 22 50 50 H 1.09000 * 109.50895 * 179.30319 * 25 23 22 51 51 H 1.09002 * 109.49066 * 303.16020 * 26 20 19 52 52 H 1.09008 * 109.48929 * 63.20376 * 26 20 19 53 53 H 1.07999 * 120.04215 * 180.02562 * 27 19 18 54 54 H 1.07990 * 119.96355 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6273 -3.6672 16 6 1.7079 0.1779 -4.8709 17 6 0.4954 -0.0770 -5.4851 18 6 0.1077 0.6627 -6.5849 19 6 0.9423 1.6561 -7.0811 20 7 0.5556 2.4028 -8.1965 21 6 0.5606 3.8410 -7.8950 22 6 0.2095 4.6261 -9.1611 23 7 -1.1084 4.1980 -9.6502 24 6 -1.5151 4.9831 -10.8232 25 6 -1.1134 2.7597 -9.9516 26 6 -0.7623 1.9746 -8.6856 27 6 2.1621 1.9059 -6.4651 28 6 2.5413 1.1659 -5.3624 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 3.1262 -0.7995 1.2057 33 1 1.6053 -1.7197 1.2952 34 1 1.9007 -0.0402 5.6795 35 1 3.1263 -0.7995 -1.2055 36 1 1.6054 -1.7198 -1.2951 37 1 1.9882 0.9872 -2.3966 38 1 3.2117 -0.7051 -3.6404 39 1 1.6905 -1.6250 -3.7296 40 1 -0.1507 -0.8528 -5.1018 41 1 -0.8413 0.4660 -7.0615 42 1 -0.1760 4.0527 -7.1199 43 1 1.5503 4.1362 -7.5467 44 1 0.9611 4.4357 -9.9271 45 1 0.1843 5.6916 -8.9328 46 1 -2.5217 4.6925 -11.1238 47 1 -1.5028 6.0438 -10.5725 48 1 -0.8225 4.7956 -11.6438 49 1 -0.3768 2.5480 -10.7266 50 1 -2.1030 2.4642 -10.3001 51 1 -0.7370 0.9090 -8.9137 52 1 -1.5140 2.1647 -7.9193 53 1 2.8131 2.6778 -6.8480 54 1 3.4893 1.3598 -4.8828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895608205.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:04 Heat of formation + Delta-G solvation = 12.704587 kcal Electronic energy + Delta-G solvation = -27593.560309 eV Core-core repulsion = 23949.779727 eV Total energy + Delta-G solvation = -3643.780581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.38544 -39.55297 -38.28024 -36.70793 -35.33322 -33.97944 -32.62715 -31.54363 -31.35472 -29.56361 -28.71032 -26.86444 -25.48950 -25.27560 -24.46498 -23.47731 -22.85926 -21.94642 -20.84201 -20.58289 -18.92746 -18.50110 -17.01286 -16.61290 -16.51388 -16.31119 -16.19143 -16.05864 -15.67178 -15.60867 -15.54201 -15.23234 -14.93734 -14.80086 -14.50310 -14.40750 -14.25026 -13.61940 -13.47068 -13.38059 -13.22009 -13.07854 -12.99913 -12.78296 -12.64487 -12.47704 -12.40747 -12.21624 -12.14916 -12.10978 -11.90939 -11.70271 -11.64417 -11.44921 -11.17841 -11.02999 -10.72960 -10.59426 -9.82872 -9.38213 -9.28809 -8.72682 -8.25198 -6.27649 0.40377 0.52589 1.36744 1.38225 1.50081 2.38506 2.57426 2.90718 2.92700 3.09981 3.48538 3.75392 3.87035 3.96628 3.98499 4.06846 4.12675 4.16914 4.21282 4.30123 4.30806 4.43874 4.46118 4.50763 4.54046 4.58940 4.62888 4.66096 4.70930 4.79972 4.80851 4.82227 4.89265 4.91495 4.93524 4.97168 4.99918 5.02608 5.10888 5.16198 5.31970 5.39871 5.41329 5.42682 5.56277 5.71106 5.74092 5.77867 5.80579 5.93452 6.02435 6.05924 6.12270 6.34578 6.36202 6.49991 6.80082 7.35853 8.91591 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.026456 B = 0.001695 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.088883 B =16517.781400 C =16880.746046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 H 0.048 0.952 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.033 0.967 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.246 1.246 12 H -0.286 1.286 13 C 0.075 3.925 14 N -0.684 5.684 15 C 0.104 3.896 16 C -0.111 4.111 17 C -0.080 4.080 18 C -0.176 4.176 19 C 0.101 3.899 20 N -0.495 5.495 21 C 0.060 3.940 22 C 0.059 3.941 23 N -0.561 5.561 24 C 0.026 3.974 25 C 0.059 3.941 26 C 0.052 3.948 27 C -0.146 4.146 28 C -0.094 4.094 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.264 0.736 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.341 0.659 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.040 0.960 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.029 0.971 49 H 0.040 0.960 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.048 0.952 53 H 0.133 0.867 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 4.316 -36.358 36.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.595 5.595 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.170 1.170 12 H -0.212 1.212 13 C -0.054 4.054 14 N -0.315 5.315 15 C -0.025 4.025 16 C -0.113 4.113 17 C -0.099 4.099 18 C -0.197 4.197 19 C 0.003 3.997 20 N -0.211 5.211 21 C -0.065 4.065 22 C -0.070 4.070 23 N -0.286 5.286 24 C -0.122 4.122 25 C -0.070 4.070 26 C -0.075 4.075 27 C -0.166 4.166 28 C -0.113 4.113 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.159 0.841 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.058 0.942 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.113 0.887 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.047 0.953 49 H 0.058 0.942 50 H 0.115 0.885 51 H 0.111 0.889 52 H 0.066 0.934 53 H 0.151 0.849 54 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.814 4.092 -36.291 36.629 hybrid contribution 1.266 -0.233 0.838 1.536 sum -1.548 3.860 -35.453 35.696 Atomic orbital electron populations 1.21491 0.95153 1.00672 0.99922 1.20892 0.96412 0.98445 0.93199 0.93333 1.19566 0.95897 0.95744 0.93206 1.21470 1.34328 1.08665 0.91329 0.94850 1.26016 0.97029 1.01026 0.95500 1.70079 1.49128 1.41611 0.98727 0.85671 0.79311 0.79454 0.78265 1.19334 1.16982 1.21197 1.21918 0.97180 0.97539 0.88767 1.60493 1.64315 1.05834 1.00884 1.20826 0.97654 0.97183 0.86814 1.19767 0.95711 0.98488 0.97307 1.21031 0.95475 0.98896 0.94493 1.21436 1.00183 0.99629 0.98437 1.19054 0.94707 0.95835 0.90064 1.59344 1.28282 1.04648 1.28829 1.22327 1.02106 0.84886 0.97208 1.22197 0.89330 0.99796 0.95635 1.62182 1.27994 1.04339 1.34081 1.22382 1.00925 0.98567 0.90290 1.22198 1.01902 0.87189 0.95662 1.22384 0.87937 1.00256 0.96911 1.20865 0.95889 1.02392 0.97452 1.21083 0.99689 0.94671 0.95833 0.93694 0.95566 0.91824 0.96524 0.96447 0.92709 0.95301 0.90972 0.84145 0.94069 0.90195 0.85442 0.84580 0.94161 0.88881 0.93978 0.88687 0.90521 0.90615 0.95282 0.94179 0.88548 0.88870 0.93366 0.84884 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.89 71.98 0.64 -3.81 16 2 C -0.07 -2.75 2.48 -10.80 -0.03 -2.77 16 3 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16 5 C -0.52 -30.27 8.96 25.60 0.23 -30.04 16 6 H 0.03 2.15 7.30 -2.91 -0.02 2.12 16 7 C 0.00 0.02 5.47 84.65 0.46 0.48 16 8 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 9 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 13 C 0.07 2.28 5.07 86.30 0.44 2.72 16 14 N -0.68 -17.95 5.94 -517.95 -3.08 -21.03 16 15 C 0.10 2.25 5.81 85.56 0.50 2.75 16 16 C -0.11 -2.35 5.40 -19.84 -0.11 -2.45 16 17 C -0.08 -1.64 9.69 22.25 0.22 -1.43 16 18 C -0.18 -3.38 8.82 22.40 0.20 -3.18 16 19 C 0.10 1.93 5.64 38.21 0.22 2.15 16 20 N -0.50 -8.24 4.75 -694.78 -3.30 -11.55 16 21 C 0.06 0.90 5.38 86.31 0.46 1.36 16 22 C 0.06 0.72 5.62 86.31 0.49 1.20 16 23 N -0.56 -7.19 4.97 -921.97 -4.58 -11.77 16 24 C 0.03 0.23 9.60 127.69 1.23 1.46 16 25 C 0.06 0.70 5.62 86.31 0.49 1.18 16 26 C 0.05 0.74 4.30 86.31 0.37 1.11 16 27 C -0.15 -2.73 9.19 22.40 0.21 -2.53 16 28 C -0.09 -1.82 9.69 22.25 0.22 -1.61 16 29 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.03 1.15 6.95 -2.39 -0.02 1.13 16 31 H 0.06 2.19 7.75 -2.38 -0.02 2.18 16 32 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 33 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.34 8.85 8.72 -89.70 -0.78 8.07 16 38 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.14 2.18 5.81 -2.91 -0.02 2.16 16 42 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 1.23 6.82 -2.39 -0.02 1.21 16 44 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.09 0.94 8.13 -2.39 -0.02 0.92 16 46 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.08 0.58 8.13 -2.39 -0.02 0.56 16 48 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 1.17 7.17 -2.39 -0.02 1.15 16 52 H 0.05 0.76 7.58 -2.38 -0.02 0.75 16 53 H 0.13 2.09 7.19 -2.91 -0.02 2.07 16 54 H 0.13 2.20 8.06 -2.92 -0.02 2.17 16 Total: -1.00 -67.71 415.31 -2.45 -70.15 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.01 Total: 21.56 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 6.32 Total: -33.60 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -10.66 Total: -104.89 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -67.71 -2.45 -70.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895608205.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.859 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds