Wall clock time and date at job start Tue Mar 31 2020 16:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47411 * 59.99456 * 9 7 5 11 11 H 1.48493 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48512 * 109.46722 * 299.99481 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 C 1.38284 * 119.92731 * 269.72721 * 16 15 14 18 18 C 1.38107 * 120.07495 * 179.72775 * 17 16 15 19 19 C 1.38905 * 119.92196 * 0.54269 * 18 17 16 20 20 N 1.39679 * 120.07256 * 179.70382 * 19 18 17 21 21 C 1.46959 * 110.99741 * 123.82507 * 20 19 18 22 22 C 1.53049 * 109.36622 * 176.81661 * 21 20 19 23 23 N 1.46952 * 109.36713 * 58.39516 * 22 21 20 24 24 C 1.46903 * 111.00395 * 176.81388 * 23 22 21 25 25 C 1.46959 * 110.88308 * 300.68502 * 23 22 21 26 26 C 1.46955 * 110.99827 * 0.02993 * 20 19 18 27 27 C 1.38908 * 119.85666 * 359.73022 * 19 18 17 28 28 C 1.38113 * 119.92265 * 359.97438 * 27 19 18 29 29 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 30 30 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 31 31 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 33 33 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 34 34 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 36 36 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 37 37 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 1.08001 * 119.96155 * 359.97438 * 17 16 15 41 41 H 1.08001 * 120.03692 * 180.27771 * 18 17 16 42 42 H 1.09006 * 109.49010 * 296.77746 * 21 20 19 43 43 H 1.08996 * 109.49100 * 56.84266 * 21 20 19 44 44 H 1.09005 * 109.48725 * 298.43314 * 22 21 20 45 45 H 1.08997 * 109.49073 * 178.37049 * 22 21 20 46 46 H 1.08992 * 109.47506 * 183.80392 * 24 23 22 47 47 H 1.09002 * 109.46786 * 303.80850 * 24 23 22 48 48 H 1.09001 * 109.46546 * 63.79915 * 24 23 22 49 49 H 1.08995 * 109.48615 * 299.35115 * 25 23 22 50 50 H 1.09002 * 109.50640 * 179.29406 * 25 23 22 51 51 H 1.08997 * 109.48960 * 303.15139 * 26 20 19 52 52 H 1.09001 * 109.49195 * 63.19898 * 26 20 19 53 53 H 1.08000 * 120.04471 * 180.02562 * 27 19 18 54 54 H 1.07993 * 119.96306 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0919 1.9226 -5.1872 11 1 1.9936 -0.1375 -6.4620 12 1 0.0188 0.6703 -5.3090 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7086 0.1787 4.8709 17 6 2.5439 1.1639 5.3650 18 6 2.1623 1.9074 6.4645 19 6 0.9429 1.6571 7.0809 20 7 0.5566 2.4030 8.1968 21 6 -0.7432 3.0511 7.9728 22 6 -1.1670 3.7913 9.2436 23 7 -0.1410 4.7828 9.5952 24 6 -0.5473 5.5675 10.7688 25 6 1.1588 4.1347 9.8192 26 6 1.5826 3.3947 8.5483 27 6 0.1088 0.6630 6.5854 28 6 0.4938 -0.0728 5.4818 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7996 -1.2055 33 1 1.6053 -1.7199 -1.2950 34 1 2.9226 -1.8425 -4.7317 35 1 3.1262 -0.7995 1.2056 36 1 1.6052 -1.7198 1.2953 37 1 1.9882 0.9873 2.3966 38 1 1.6919 -1.6245 3.7301 39 1 3.2126 -0.7037 3.6401 40 1 3.4939 1.3547 4.8881 41 1 2.8131 2.6797 6.8471 42 1 -0.6587 3.7609 7.1498 43 1 -1.4888 2.2952 7.7264 44 1 -1.2780 3.0777 10.0601 45 1 -2.1170 4.2967 9.0703 46 1 0.1979 6.3379 10.9665 47 1 -1.5123 6.0362 10.5761 48 1 -0.6290 4.9102 11.6345 49 1 1.0742 3.4251 10.6422 50 1 1.9046 4.8905 10.0658 51 1 2.5326 2.8892 8.7215 52 1 1.6938 4.1081 7.7317 53 1 -0.8401 0.4661 7.0621 54 1 -0.1544 -0.8455 5.0959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895608206.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:08 Heat of formation + Delta-G solvation = 10.303286 kcal Electronic energy + Delta-G solvation = -27547.780331 eV Core-core repulsion = 23903.895621 eV Total energy + Delta-G solvation = -3643.884709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.38526 -39.55238 -38.24937 -36.69553 -35.36273 -33.88837 -32.62448 -31.47916 -31.34381 -29.22173 -28.53360 -26.88741 -25.57691 -25.30575 -24.57923 -23.67671 -22.86981 -21.92913 -20.88332 -20.57053 -18.53139 -18.45047 -16.99884 -16.68955 -16.58126 -16.30341 -16.17818 -16.03713 -15.72932 -15.65699 -15.43668 -15.27124 -14.90355 -14.67015 -14.41658 -14.36606 -14.09095 -13.58827 -13.44521 -13.30799 -13.15976 -13.06257 -12.99115 -12.73466 -12.69668 -12.53983 -12.37518 -12.26556 -12.19810 -12.09925 -11.95229 -11.87179 -11.62662 -11.47288 -11.08765 -10.92654 -10.59204 -10.51948 -9.82451 -9.38000 -9.31759 -8.72704 -8.16387 -6.25580 0.40336 0.52242 1.40642 1.43404 1.51110 2.42775 2.57651 2.90799 2.93025 3.16811 3.48057 3.75332 3.87659 3.96256 3.98703 4.08443 4.10571 4.19440 4.21692 4.31220 4.32026 4.44058 4.47340 4.53342 4.55778 4.59510 4.63481 4.67476 4.69838 4.79313 4.81038 4.82671 4.91197 4.92528 4.95805 5.00300 5.02937 5.04060 5.15932 5.29915 5.31731 5.40100 5.47429 5.51869 5.57112 5.77541 5.80147 5.82612 5.89985 5.93848 6.02515 6.06110 6.08262 6.32365 6.35045 6.49419 6.90104 7.42528 8.95318 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.001680 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.644902 B =16664.311205 C =17176.594695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.679 5.679 15 C 0.102 3.898 16 C -0.111 4.111 17 C -0.093 4.093 18 C -0.174 4.174 19 C 0.102 3.898 20 N -0.495 5.495 21 C 0.060 3.940 22 C 0.059 3.941 23 N -0.560 5.560 24 C 0.026 3.974 25 C 0.058 3.942 26 C 0.052 3.948 27 C -0.146 4.146 28 C -0.080 4.080 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.035 0.965 32 H -0.014 1.014 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.019 0.981 36 H 0.063 0.937 37 H 0.341 0.659 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.041 0.959 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.028 0.972 49 H 0.040 0.960 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.049 0.951 53 H 0.134 0.866 54 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 11.390 32.886 35.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.310 5.310 15 C -0.026 4.026 16 C -0.112 4.112 17 C -0.112 4.112 18 C -0.195 4.195 19 C 0.004 3.996 20 N -0.211 5.211 21 C -0.065 4.065 22 C -0.070 4.070 23 N -0.286 5.286 24 C -0.122 4.122 25 C -0.070 4.070 26 C -0.075 4.075 27 C -0.166 4.166 28 C -0.099 4.099 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.005 0.995 33 H 0.009 0.991 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.047 0.953 49 H 0.058 0.942 50 H 0.115 0.885 51 H 0.111 0.889 52 H 0.067 0.933 53 H 0.151 0.849 54 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.609 11.045 32.870 35.127 hybrid contribution 1.050 0.069 -1.124 1.540 sum -4.559 11.115 31.746 33.943 Atomic orbital electron populations 1.21474 0.94740 1.00368 1.00378 1.21012 0.96691 0.98376 0.93234 0.92941 1.19013 0.94119 0.94701 0.92676 1.21625 1.34515 1.08624 0.92141 0.92153 1.25945 0.95264 0.96103 1.02617 1.70093 1.40232 1.22901 1.24304 0.85564 0.78911 0.78764 0.78191 1.19293 1.20984 1.19280 1.21869 0.96645 0.97405 0.89285 1.60538 1.64022 1.05747 1.00683 1.20832 0.97497 0.97253 0.87050 1.19737 0.95631 0.98642 0.97224 1.21065 0.99528 0.94728 0.95886 1.21397 0.98241 1.02363 0.97499 1.19045 0.95058 0.95634 0.89829 1.59342 1.04883 1.24513 1.32373 1.22329 0.89611 0.97143 0.97443 1.22197 0.95461 0.93239 0.96061 1.62188 1.03163 1.25253 1.37948 1.22382 1.02303 0.97452 0.90031 1.22202 0.91774 0.97155 0.95836 1.22385 0.94823 0.92692 0.97588 1.20891 1.00809 0.96838 0.98037 1.21030 0.95380 0.98977 0.94528 0.91630 0.94455 0.94558 0.99515 0.99121 0.92963 0.96254 0.91816 0.84125 0.90387 0.94399 0.85403 0.84430 0.94073 0.88912 0.94015 0.88644 0.90517 0.90591 0.95313 0.94217 0.88535 0.88912 0.93268 0.84852 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -3.08 2.48 -10.80 -0.03 -3.10 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.40 8.41 25.60 0.22 -30.19 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.08 2.66 5.07 86.30 0.44 3.10 16 14 N -0.68 -19.28 5.94 -517.92 -3.08 -22.36 16 15 C 0.10 2.46 5.81 85.55 0.50 2.96 16 16 C -0.11 -2.48 5.39 -19.84 -0.11 -2.59 16 17 C -0.09 -1.91 9.69 22.25 0.22 -1.69 16 18 C -0.17 -3.34 8.82 22.40 0.20 -3.14 16 19 C 0.10 1.98 5.64 38.21 0.22 2.20 16 20 N -0.50 -8.31 4.76 -694.78 -3.30 -11.61 16 21 C 0.06 0.90 5.38 86.31 0.46 1.36 16 22 C 0.06 0.72 5.62 86.31 0.49 1.20 16 23 N -0.56 -7.12 4.97 -921.94 -4.58 -11.70 16 24 C 0.03 0.23 9.60 127.69 1.23 1.45 16 25 C 0.06 0.69 5.62 86.31 0.49 1.18 16 26 C 0.05 0.73 4.30 86.31 0.37 1.10 16 27 C -0.15 -2.86 9.19 22.40 0.21 -2.66 16 28 C -0.08 -1.71 9.69 22.25 0.22 -1.49 16 29 H 0.06 2.24 7.75 -2.38 -0.02 2.22 16 30 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.34 9.38 8.72 -89.69 -0.78 8.60 16 38 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 40 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.14 2.15 5.81 -2.91 -0.02 2.14 16 42 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.09 1.25 6.82 -2.39 -0.02 1.23 16 44 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.10 0.93 8.13 -2.39 -0.02 0.91 16 46 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.57 8.13 -2.39 -0.02 0.55 16 48 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 1.17 7.17 -2.39 -0.02 1.15 16 52 H 0.05 0.76 7.58 -2.39 -0.02 0.74 16 53 H 0.13 2.22 7.18 -2.91 -0.02 2.20 16 54 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.64 418.92 -2.25 -67.90 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.07 Total: 20.00 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 6.33 Total: -31.84 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -10.68 Total: -102.97 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.64 -2.25 -67.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895608206.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.199 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds