Wall clock time and date at job start Tue Mar 31 2020 16:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47735 * 2 1 4 4 N 1.46897 * 109.47103 * 239.99711 * 2 1 3 5 5 C 1.46900 * 111.00144 * 153.80003 * 4 2 1 6 6 C 1.53044 * 109.46004 * 273.62526 * 5 4 2 7 7 C 1.53190 * 109.31538 * 178.61552 * 6 5 4 8 8 N 1.46924 * 108.77481 * 54.62902 * 7 6 5 9 9 C 1.36942 * 120.62503 * 126.37365 * 8 7 6 10 10 H 1.08001 * 120.00031 * 325.11462 * 9 8 7 11 11 C 1.38810 * 120.00156 * 145.12315 * 9 8 7 12 12 N 1.31624 * 119.99527 * 344.81590 * 11 9 8 13 13 Si 1.86797 * 120.00329 * 164.81652 * 11 9 8 14 14 H 1.48493 * 109.47198 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47183 * 119.99993 * 13 11 9 16 16 H 1.48506 * 109.47006 * 239.99531 * 13 11 9 17 17 C 1.46922 * 118.74352 * 306.39531 * 8 7 6 18 18 C 1.53036 * 109.46172 * 153.55769 * 5 4 2 19 19 C 1.50702 * 109.47268 * 119.99712 * 2 1 3 20 20 C 1.38262 * 120.00014 * 79.97444 * 19 2 1 21 21 C 1.38208 * 120.00425 * 179.97438 * 20 19 2 22 22 C 1.38257 * 119.99615 * 0.02562 * 21 20 19 23 23 C 1.38216 * 120.00248 * 359.80404 * 22 21 20 24 24 C 1.50701 * 119.99946 * 180.23709 * 23 22 21 25 25 N 1.46904 * 109.46995 * 270.19114 * 24 23 22 26 26 C 1.46901 * 110.99698 * 170.00441 * 25 24 23 27 27 C 1.46904 * 110.99720 * 293.95335 * 25 24 23 28 28 C 1.38213 * 120.00152 * 260.00153 * 19 2 1 29 29 H 1.08999 * 109.46741 * 55.39568 * 1 2 3 30 30 H 1.08997 * 109.47345 * 175.40408 * 1 2 3 31 31 H 1.09005 * 109.47077 * 295.39925 * 1 2 3 32 32 H 1.00899 * 111.00028 * 277.75284 * 4 2 1 33 33 H 1.09001 * 109.46373 * 33.57994 * 5 4 2 34 34 H 1.09007 * 109.49707 * 298.56622 * 6 5 4 35 35 H 1.08998 * 109.49867 * 58.65630 * 6 5 4 36 36 H 1.09006 * 109.58289 * 294.84403 * 7 6 5 37 37 H 1.09002 * 109.70465 * 174.48968 * 7 6 5 38 38 H 0.97001 * 119.99939 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.58693 * 293.82287 * 17 8 7 40 40 H 1.08997 * 109.70260 * 173.46621 * 17 8 7 41 41 H 1.09008 * 109.49496 * 301.33261 * 18 5 4 42 42 H 1.09002 * 109.50462 * 61.39994 * 18 5 4 43 43 H 1.08000 * 119.99721 * 0.02562 * 20 19 2 44 44 H 1.08000 * 120.00347 * 180.02562 * 21 20 19 45 45 H 1.08002 * 120.00034 * 180.02562 * 22 21 20 46 46 H 1.08995 * 109.47266 * 30.19078 * 24 23 22 47 47 H 1.09000 * 109.46925 * 150.19050 * 24 23 22 48 48 H 1.08994 * 109.47023 * 60.00034 * 26 25 24 49 49 H 1.09003 * 109.46864 * 179.97438 * 26 25 24 50 50 H 1.08994 * 109.46711 * 299.99688 * 26 25 24 51 51 H 1.08999 * 109.47195 * 60.00599 * 27 25 24 52 52 H 1.09002 * 109.46755 * 179.97438 * 27 25 24 53 53 H 1.08994 * 109.47361 * 300.00220 * 27 25 24 54 54 H 1.07994 * 120.00196 * 359.97251 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.3553 -0.2113 -1.5768 6 6 3.2186 1.0263 -2.4667 7 6 4.6133 1.5457 -2.8299 8 7 5.3834 0.4500 -3.4340 9 6 5.9797 0.6078 -4.6567 10 1 5.5018 1.2077 -5.4171 11 6 7.1981 -0.0033 -4.9188 12 7 7.9232 -0.4772 -3.9278 13 14 7.8087 -0.1531 -6.6778 14 1 6.8154 0.4535 -7.5999 15 1 9.1072 0.5546 -6.8130 16 1 7.9888 -1.5872 -7.0188 17 6 5.5013 -0.8183 -2.7018 18 6 4.0967 -1.3111 -2.3401 19 6 2.0324 -0.7103 1.2305 20 6 2.0663 -2.0921 1.2657 21 6 2.5275 -2.7436 2.3939 22 6 2.9545 -2.0136 3.4876 23 6 2.9239 -0.6323 3.4513 24 6 3.3943 0.1634 4.6415 25 7 2.2635 0.4032 5.5481 26 6 2.7228 0.9655 6.8251 27 6 1.2607 1.2737 4.9199 28 6 2.4587 0.0194 2.3241 29 1 -0.3633 0.5836 -0.8459 30 1 -0.3634 -1.0243 -0.0823 31 1 -0.3633 0.4408 0.9284 32 1 2.0204 -1.6925 -1.0646 33 1 3.9152 0.0479 -0.6783 34 1 2.6803 0.7623 -3.3770 35 1 2.6700 1.8009 -1.9309 36 1 5.1191 1.8948 -1.9295 37 1 4.5259 2.3667 -3.5415 38 1 8.7749 -0.9040 -4.1109 39 1 6.0795 -0.6620 -1.7911 40 1 5.9987 -1.5591 -3.3278 41 1 4.1731 -2.2003 -1.7141 42 1 3.5499 -1.5537 -3.2513 43 1 1.7331 -2.6623 0.4111 44 1 2.5544 -3.8230 2.4212 45 1 3.3153 -2.5227 4.3692 46 1 4.1698 -0.3935 5.1673 47 1 3.7980 1.1179 4.3038 48 1 3.2318 1.9120 6.6433 49 1 1.8657 1.1337 7.4772 50 1 3.4115 0.2683 7.3022 51 1 0.8864 0.8007 4.0120 52 1 0.4344 1.4346 5.6124 53 1 1.7167 2.2314 4.6691 54 1 2.4322 1.0987 2.2967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925002661.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:48 Heat of formation + Delta-G solvation = 29.089926 kcal Electronic energy + Delta-G solvation = -29198.347506 eV Core-core repulsion = 25555.277446 eV Total energy + Delta-G solvation = -3643.070060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.97181 -39.55260 -38.21977 -36.86491 -34.68410 -32.81674 -32.47981 -31.58735 -30.75022 -29.48430 -28.48178 -27.69740 -26.45201 -24.49465 -23.83815 -23.54929 -22.96631 -22.53129 -20.70696 -20.51600 -18.70718 -17.82576 -17.03707 -16.77516 -16.44760 -16.41873 -16.18527 -15.81803 -15.69072 -15.34465 -15.29946 -14.97057 -14.76157 -14.63357 -14.27116 -13.94164 -13.82424 -13.69281 -13.26303 -13.23690 -13.08353 -13.05136 -12.78592 -12.74256 -12.71149 -12.63694 -12.50558 -12.44897 -12.24352 -12.12376 -11.96008 -11.88771 -11.76550 -11.61876 -11.24841 -11.10392 -10.58076 -9.77371 -9.61411 -9.37687 -9.27828 -8.61155 -7.89249 -5.42182 0.40840 0.48160 1.44857 1.46531 1.57873 2.49709 2.71858 3.14692 3.23715 3.29354 3.68361 3.69265 3.79573 3.97432 4.02171 4.09955 4.19454 4.22255 4.32726 4.36719 4.43667 4.46765 4.50243 4.54277 4.56792 4.59909 4.66983 4.70119 4.74832 4.75656 4.80079 4.87445 4.98529 5.00105 5.01243 5.04396 5.06013 5.09836 5.15477 5.18305 5.25340 5.37875 5.38499 5.47339 5.54879 5.61152 5.65289 5.66711 5.70430 5.97807 6.04942 6.12576 6.18837 6.41399 6.51340 7.14572 7.82946 8.39794 9.16793 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002582 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.637966 B =10842.645481 C =11250.669478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.124 3.876 3 H 0.075 0.925 4 N -0.673 5.673 5 C 0.112 3.888 6 C -0.102 4.102 7 C 0.142 3.858 8 N -0.608 5.608 9 C -0.267 4.267 10 H 0.062 0.938 11 C -0.045 4.045 12 N -0.933 5.933 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.290 1.290 16 H -0.288 1.288 17 C 0.188 3.812 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.084 4.084 24 C 0.095 3.905 25 N -0.552 5.552 26 C 0.023 3.977 27 C 0.021 3.979 28 C -0.116 4.116 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.343 0.657 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.054 0.946 38 H 0.251 0.749 39 H -0.008 1.008 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.128 0.872 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.039 0.961 48 H 0.027 0.973 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.077 0.923 53 H 0.026 0.974 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.691 -0.605 19.648 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 H 0.093 0.907 4 N -0.305 5.305 5 C 0.002 3.998 6 C -0.142 4.142 7 C 0.016 3.984 8 N -0.331 5.331 9 C -0.398 4.398 10 H 0.079 0.921 11 C -0.241 4.241 12 N -0.578 5.578 13 Si 0.795 3.205 14 H -0.190 1.190 15 H -0.217 1.217 16 H -0.215 1.215 17 C 0.061 3.939 18 C -0.165 4.165 19 C -0.115 4.115 20 C -0.145 4.145 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.084 4.084 24 C -0.032 4.032 25 N -0.276 5.276 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.135 4.135 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.108 0.892 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.083 0.917 52 H 0.095 0.905 53 H 0.045 0.955 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.108 -0.685 19.298 25.146 hybrid contribution 1.894 0.248 -0.351 1.942 sum -14.213 -0.436 18.946 23.689 Atomic orbital electron populations 1.21663 0.92184 1.02447 1.01880 1.20631 0.96539 0.96892 0.84512 0.90652 1.60830 1.24720 1.10070 1.34848 1.21142 0.88000 0.95087 0.95558 1.21819 0.96428 0.96742 0.99189 1.21062 0.91328 0.90689 0.95340 1.44224 1.59953 1.09495 1.19475 1.19461 0.99664 1.30457 0.90196 0.92079 1.25999 0.95584 1.01489 1.01032 1.70188 1.12696 1.43424 1.31528 0.85218 0.77772 0.77220 0.80295 1.18978 1.21697 1.21477 1.20391 0.92397 0.87842 0.93256 1.22149 0.97291 0.97288 0.99784 1.20736 0.99401 0.94578 0.96744 1.21093 1.00566 0.93953 0.98916 1.21360 0.98484 1.00864 0.93166 1.21190 0.99708 0.93339 0.98793 1.19841 0.99355 0.94370 0.94843 1.21050 0.92821 0.98064 0.91282 1.62023 1.12947 1.47837 1.04762 1.22450 1.01230 0.98164 0.90621 1.22463 0.95598 0.94347 1.00296 1.21004 0.99721 0.99615 0.93166 0.91809 0.92356 0.91706 0.83599 0.95746 0.92508 0.91191 0.97608 0.92781 0.94047 0.99017 0.93875 0.91866 0.92327 0.85416 0.84290 0.84880 0.89198 0.94253 0.95470 0.90317 0.90650 0.91743 0.90460 0.95514 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.50 71.98 0.68 -1.69 16 2 C 0.12 2.87 2.64 44.17 0.12 2.99 16 3 H 0.08 1.86 7.07 -2.38 -0.02 1.85 16 4 N -0.67 -18.06 6.05 -473.17 -2.86 -20.92 16 5 C 0.11 3.76 2.25 44.94 0.10 3.86 16 6 C -0.10 -3.62 5.58 30.67 0.17 -3.45 16 7 C 0.14 6.19 6.52 86.36 0.56 6.75 16 8 N -0.61 -31.68 2.95 -699.10 -2.06 -33.75 16 9 C -0.27 -15.15 9.51 84.03 0.80 -14.35 16 10 H 0.06 3.40 7.87 -2.91 -0.02 3.38 16 11 C -0.04 -2.56 4.91 84.86 0.42 -2.15 16 12 N -0.93 -56.49 11.61 21.65 0.25 -56.23 16 13 Si 0.97 45.55 29.58 68.60 2.03 47.58 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 17 C 0.19 9.33 5.26 86.36 0.45 9.78 16 18 C -0.13 -4.82 5.35 30.67 0.16 -4.66 16 19 C -0.11 -2.60 4.68 -19.86 -0.09 -2.70 16 20 C -0.13 -2.78 9.10 22.27 0.20 -2.58 16 21 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 22 C -0.11 -2.29 9.70 22.27 0.22 -2.07 16 23 C -0.08 -1.78 4.88 -19.86 -0.10 -1.87 16 24 C 0.10 1.73 5.12 85.56 0.44 2.17 16 25 N -0.55 -9.34 5.01 -953.47 -4.78 -14.12 16 26 C 0.02 0.29 9.57 127.69 1.22 1.51 16 27 C 0.02 0.33 9.14 127.69 1.17 1.50 16 28 C -0.12 -2.61 7.59 22.27 0.17 -2.45 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.34 8.63 5.90 -89.69 -0.53 8.10 16 33 H 0.02 0.90 7.67 -2.39 -0.02 0.88 16 34 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.07 2.14 7.53 -2.39 -0.02 2.13 16 36 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.05 2.31 7.93 -2.39 -0.02 2.30 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.04 2.40 6.55 -2.39 -0.02 2.38 16 41 H 0.06 2.16 8.10 -2.38 -0.02 2.15 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.13 2.52 6.52 -2.91 -0.02 2.50 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 46 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 47 H 0.04 0.74 8.06 -2.39 -0.02 0.72 16 48 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 51 H 0.06 1.15 6.17 -2.39 -0.01 1.13 16 52 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 53 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 54 H 0.12 2.51 8.01 -2.91 -0.02 2.49 16 Total: -1.00 -65.10 415.34 -0.19 -65.29 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.32 Total: 23.79 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 6.92 Total: -11.64 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -9.45 Total: -125.02 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.10 -0.19 -65.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925002661.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.377 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds