Wall clock time and date at job start Tue Mar 31 2020 16:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46821 * 2 1 4 4 N 1.46900 * 109.46999 * 119.99689 * 2 1 3 5 5 C 1.46903 * 111.00029 * 275.00148 * 4 2 1 6 6 C 1.53036 * 109.46343 * 275.06770 * 5 4 2 7 7 C 1.53190 * 109.31163 * 178.61470 * 6 5 4 8 8 N 1.46919 * 108.77629 * 54.63962 * 7 6 5 9 9 C 1.36935 * 120.63315 * 126.37161 * 8 7 6 10 10 H 1.07998 * 119.99988 * 331.85111 * 9 8 7 11 11 C 1.38809 * 120.00476 * 151.85750 * 9 8 7 12 12 N 1.31625 * 119.99717 * 343.07278 * 11 9 8 13 13 Si 1.86801 * 120.00256 * 163.06791 * 11 9 8 14 14 H 1.48503 * 109.46947 * 60.00257 * 13 11 9 15 15 H 1.48504 * 109.47233 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47216 * 300.00161 * 13 11 9 17 17 C 1.46931 * 118.73723 * 306.38517 * 8 7 6 18 18 C 1.53048 * 109.45624 * 154.99900 * 5 4 2 19 19 C 1.50689 * 109.47531 * 240.00235 * 2 1 3 20 20 C 1.38263 * 119.99773 * 279.72533 * 19 2 1 21 21 C 1.38217 * 119.99659 * 179.76653 * 20 19 2 22 22 C 1.38257 * 120.00290 * 0.50749 * 21 20 19 23 23 C 1.38211 * 119.99604 * 359.74201 * 22 21 20 24 24 C 1.50707 * 119.99635 * 179.97438 * 23 22 21 25 25 N 1.46902 * 109.46894 * 270.02482 * 24 23 22 26 26 C 1.46896 * 111.00200 * 66.04871 * 25 24 23 27 27 C 1.46904 * 110.99982 * 190.00209 * 25 24 23 28 28 C 1.38221 * 120.00479 * 99.99879 * 19 2 1 29 29 H 1.09003 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47334 * 300.00255 * 1 2 3 31 31 H 1.09002 * 109.46937 * 60.00588 * 1 2 3 32 32 H 1.00896 * 110.99637 * 151.05516 * 4 2 1 33 33 H 1.09000 * 109.45929 * 35.03307 * 5 4 2 34 34 H 1.08997 * 109.49783 * 298.56905 * 6 5 4 35 35 H 1.09010 * 109.49575 * 58.66610 * 6 5 4 36 36 H 1.09002 * 109.59061 * 294.84515 * 7 6 5 37 37 H 1.08999 * 109.70202 * 174.49738 * 7 6 5 38 38 H 0.97001 * 119.99866 * 180.02562 * 12 11 9 39 39 H 1.08995 * 109.58711 * 293.82710 * 17 8 7 40 40 H 1.09000 * 109.70438 * 173.46439 * 17 8 7 41 41 H 1.08993 * 109.49526 * 301.33869 * 18 5 4 42 42 H 1.08997 * 109.49203 * 61.44001 * 18 5 4 43 43 H 1.07998 * 120.00282 * 359.97438 * 20 19 2 44 44 H 1.08006 * 119.99629 * 180.22815 * 21 20 19 45 45 H 1.07998 * 120.00143 * 179.72575 * 22 21 20 46 46 H 1.08994 * 109.47311 * 30.02177 * 24 23 22 47 47 H 1.09000 * 109.46766 * 150.02729 * 24 23 22 48 48 H 1.08994 * 109.47349 * 59.99671 * 26 25 24 49 49 H 1.08997 * 109.47180 * 180.02562 * 26 25 24 50 50 H 1.09003 * 109.46877 * 299.99613 * 26 25 24 51 51 H 1.08998 * 109.47197 * 59.99888 * 27 25 24 52 52 H 1.08997 * 109.47581 * 179.97438 * 27 25 24 53 53 H 1.09000 * 109.46982 * 300.00240 * 27 25 24 54 54 H 1.08000 * 119.99201 * 0.02562 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 3.4107 0.9823 2.3213 7 6 3.4578 1.9603 3.4994 8 7 3.2124 1.2160 4.7421 9 6 4.0897 1.2992 5.7901 10 1 5.1339 1.5038 5.6053 11 6 3.6371 1.1204 7.0901 12 7 2.3508 1.2037 7.3564 13 14 4.8536 0.7616 8.4616 14 1 5.8221 1.8821 8.5699 15 1 4.1224 0.6142 9.7458 16 1 5.5831 -0.4960 8.1597 17 6 2.0077 0.3803 4.8388 18 6 1.9769 -0.5801 3.6456 19 6 2.0324 -0.7103 -1.2304 20 6 2.0722 -2.0920 -1.2631 21 6 2.5285 -2.7435 -2.3935 22 6 2.9550 -2.0136 -3.4874 23 6 2.9200 -0.6323 -3.4527 24 6 3.3855 0.1633 -4.6450 25 7 4.8224 0.4409 -4.5177 26 6 5.6071 -0.7984 -4.5968 27 6 5.2634 1.4088 -5.5310 28 6 2.4588 0.0194 -2.3241 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.9173 -1.1203 1.0288 33 1 1.2572 0.9326 2.2908 34 1 4.2360 0.2749 2.4024 35 1 3.4955 1.5353 1.3857 36 1 2.6894 2.7229 3.3723 37 1 4.4385 2.4340 3.5448 38 1 2.0345 1.0791 8.2649 39 1 1.1211 1.0139 4.8208 40 1 2.0301 -0.1908 5.7669 41 1 1.0412 -1.1391 3.6527 42 1 2.8157 -1.2727 3.7143 43 1 1.7436 -2.6621 -0.4068 44 1 2.5561 -3.8229 -2.4204 45 1 3.3157 -2.5227 -4.3690 46 1 3.2051 -0.4076 -5.5557 47 1 2.8364 1.1038 -4.6908 48 1 5.4281 -1.2811 -5.5575 49 1 6.6671 -0.5642 -4.4992 50 1 5.3081 -1.4697 -3.7916 51 1 4.7147 2.3421 -5.4051 52 1 6.3307 1.5966 -5.4139 53 1 5.0720 1.0061 -6.5256 54 1 2.4322 1.0988 -2.2966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925002663.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:52 Heat of formation + Delta-G solvation = 30.691213 kcal Electronic energy + Delta-G solvation = -28797.306076 eV Core-core repulsion = 25154.305454 eV Total energy + Delta-G solvation = -3643.000623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.83912 -39.63502 -38.20419 -36.87527 -34.64203 -32.81025 -32.44625 -31.57751 -30.62537 -29.43369 -28.46445 -27.64986 -26.54961 -24.50297 -23.74173 -23.61733 -22.82160 -22.28970 -20.94051 -20.50335 -18.78339 -17.52789 -16.97538 -16.80070 -16.53221 -16.38073 -16.04382 -15.95874 -15.39980 -15.35839 -15.23620 -15.05931 -14.71823 -14.60194 -14.22734 -13.92188 -13.79519 -13.58479 -13.23331 -13.15485 -13.03636 -13.00620 -12.93129 -12.84370 -12.62068 -12.57505 -12.50701 -12.45922 -12.36745 -12.00101 -11.94313 -11.83196 -11.75813 -11.48656 -11.39784 -11.15103 -10.53580 -9.68360 -9.59203 -9.27797 -9.23202 -8.67956 -7.87128 -5.32694 0.44755 0.53140 1.46438 1.49164 1.56022 2.51520 2.74942 3.17240 3.28180 3.30594 3.68862 3.71906 3.87365 3.98448 4.06338 4.14586 4.21418 4.29714 4.31495 4.39877 4.42568 4.46843 4.51494 4.55044 4.58365 4.63072 4.69623 4.71946 4.76065 4.79219 4.84672 4.86926 4.98359 5.01163 5.02410 5.03928 5.09709 5.15295 5.17804 5.24519 5.28742 5.33062 5.38584 5.52641 5.62094 5.65206 5.67212 5.71404 5.77484 6.03806 6.09249 6.15991 6.22089 6.39971 6.52140 7.15372 7.86526 8.38605 9.19285 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.002377 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.528831 B =11778.514980 C =12515.234181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.126 3.874 3 H 0.046 0.954 4 N -0.673 5.673 5 C 0.109 3.891 6 C -0.143 4.143 7 C 0.146 3.854 8 N -0.610 5.610 9 C -0.266 4.266 10 H 0.064 0.936 11 C -0.050 4.050 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.275 1.275 15 H -0.293 1.293 16 H -0.278 1.278 17 C 0.178 3.822 18 C -0.109 4.109 19 C -0.091 4.091 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.085 4.085 24 C 0.097 3.903 25 N -0.561 5.561 26 C 0.022 3.978 27 C 0.024 3.976 28 C -0.103 4.103 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.341 0.659 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.012 0.988 37 H 0.050 0.950 38 H 0.250 0.750 39 H -0.005 1.005 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.072 0.928 52 H 0.072 0.928 53 H 0.033 0.967 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.719 -5.550 -28.711 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.017 3.983 3 H 0.064 0.936 4 N -0.303 5.303 5 C -0.001 4.001 6 C -0.184 4.184 7 C 0.020 3.980 8 N -0.334 5.334 9 C -0.396 4.396 10 H 0.082 0.918 11 C -0.246 4.246 12 N -0.580 5.580 13 Si 0.795 3.205 14 H -0.201 1.201 15 H -0.219 1.219 16 H -0.205 1.205 17 C 0.052 3.948 18 C -0.148 4.148 19 C -0.092 4.092 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.086 4.086 24 C -0.030 4.030 25 N -0.285 5.285 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.091 0.909 52 H 0.091 0.909 53 H 0.051 0.949 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.107 -5.580 -27.955 28.507 hybrid contribution 1.046 0.249 0.298 1.115 sum 1.153 -5.331 -27.657 28.190 Atomic orbital electron populations 1.21739 0.93388 1.02288 1.01293 1.20396 0.96103 0.95095 0.86717 0.93642 1.60789 1.33355 1.32506 1.03671 1.21271 0.95839 0.92721 0.90222 1.22506 0.98484 0.99299 0.98106 1.20946 0.98179 0.92698 0.86205 1.44310 1.25290 1.51229 1.12525 1.19465 0.89974 1.44162 0.85979 0.91841 1.25811 0.97511 1.01754 0.99506 1.70184 1.14392 1.54012 1.19447 0.85342 0.78378 0.78479 0.78256 1.20095 1.21877 1.20452 1.20589 0.86810 0.91226 0.96165 1.21914 1.00719 0.97839 0.94363 1.19915 0.99778 0.94289 0.95204 1.21150 0.99132 0.93837 0.98596 1.21357 0.98972 1.00782 0.93162 1.21212 0.99898 0.93304 0.99096 1.19782 0.99194 0.93916 0.95671 1.21044 0.88453 0.99371 0.94115 1.61960 1.03340 1.12933 1.50261 1.22447 0.98302 0.91361 1.00496 1.22418 1.01750 0.95783 0.92371 1.20953 0.98677 0.99813 0.92714 0.92167 0.93295 0.91575 0.84012 0.91701 0.92781 0.91250 0.96984 0.93146 0.94056 0.98709 0.92841 0.91669 0.93527 0.85532 0.84411 0.84979 0.93065 0.89592 0.94732 0.91207 0.91721 0.90950 0.90921 0.94857 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.38 71.98 0.68 -2.25 16 2 C 0.13 3.01 2.63 44.17 0.12 3.13 16 3 H 0.05 1.15 6.96 -2.38 -0.02 1.13 16 4 N -0.67 -18.36 5.44 -473.17 -2.57 -20.93 16 5 C 0.11 3.64 2.24 44.94 0.10 3.74 16 6 C -0.14 -4.95 5.31 30.67 0.16 -4.79 16 7 C 0.15 6.27 6.52 86.36 0.56 6.83 16 8 N -0.61 -31.66 2.99 -699.11 -2.09 -33.75 16 9 C -0.27 -15.05 9.58 84.03 0.81 -14.25 16 10 H 0.06 3.51 7.88 -2.91 -0.02 3.49 16 11 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 12 N -0.93 -56.46 11.19 21.65 0.24 -56.22 16 13 Si 0.97 45.76 29.59 68.60 2.03 47.79 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 C 0.18 8.90 5.30 86.36 0.46 9.36 16 18 C -0.11 -4.27 5.69 30.68 0.17 -4.09 16 19 C -0.09 -1.99 4.72 -19.87 -0.09 -2.08 16 20 C -0.11 -2.24 9.00 22.27 0.20 -2.04 16 21 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 22 C -0.12 -1.91 7.97 22.27 0.18 -1.73 16 23 C -0.09 -1.52 4.88 -19.87 -0.10 -1.61 16 24 C 0.10 1.43 5.12 85.56 0.44 1.87 16 25 N -0.56 -8.90 5.01 -953.48 -4.78 -13.68 16 26 C 0.02 0.31 9.14 127.69 1.17 1.48 16 27 C 0.02 0.29 9.57 127.69 1.22 1.51 16 28 C -0.10 -2.09 9.33 22.27 0.21 -1.89 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.21 7.42 -2.39 -0.02 1.19 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.34 9.26 7.73 -89.70 -0.69 8.57 16 33 H 0.06 2.26 7.11 -2.39 -0.02 2.24 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.09 7.41 -2.38 -0.02 2.07 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 39 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.05 3.02 6.06 -2.39 -0.01 3.00 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.13 2.68 7.71 -2.91 -0.02 2.66 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.13 1.64 8.03 -2.91 -0.02 1.61 16 46 H 0.05 0.64 8.06 -2.39 -0.02 0.63 16 47 H 0.09 1.18 8.01 -2.39 -0.02 1.16 16 48 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 50 H 0.06 1.04 6.16 -2.39 -0.01 1.02 16 51 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 52 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 53 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 54 H 0.12 2.36 8.04 -2.91 -0.02 2.33 16 Total: -1.00 -63.94 415.41 -0.10 -64.03 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.15 Total: 23.99 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 6.92 Total: -11.23 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -9.20 Total: -124.58 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -63.94 -0.10 -64.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925002663.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.725 kcal (2) G-P(sol) polarization free energy of solvation -63.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds