Wall clock time and date at job start Tue Mar 31 2020 16:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46782 * 2 1 4 4 C 1.50698 * 109.47327 * 239.99625 * 2 1 3 5 5 C 1.38261 * 120.00109 * 199.63123 * 4 2 1 6 6 C 1.38208 * 119.99880 * 180.34610 * 5 4 2 7 7 C 1.38256 * 120.00471 * 359.88050 * 6 5 4 8 8 C 1.38216 * 119.99647 * 0.09344 * 7 6 5 9 9 C 1.50697 * 119.99753 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47258 * 269.97530 * 9 8 7 11 11 C 1.46905 * 110.99692 * 66.04932 * 10 9 8 12 12 C 1.46906 * 110.99974 * 189.99955 * 10 9 8 13 13 C 1.38212 * 120.00097 * 19.90071 * 4 2 1 14 14 N 1.46905 * 109.46697 * 119.99647 * 2 1 3 15 15 C 1.46953 * 110.99874 * 54.67505 * 14 2 1 16 16 C 1.53058 * 109.36105 * 176.80953 * 15 14 2 17 17 N 1.46954 * 109.36396 * 58.40413 * 16 15 14 18 18 C 1.46897 * 110.99929 * 176.81068 * 17 16 15 19 19 C 1.50699 * 109.47356 * 59.14440 * 18 17 16 20 20 H 1.08001 * 119.99849 * 355.48629 * 19 18 17 21 21 C 1.37881 * 120.00283 * 175.48923 * 19 18 17 22 22 N 1.31514 * 119.99406 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47301 * 59.99769 * 23 21 19 25 25 H 1.48495 * 109.47085 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47268 * 299.99978 * 23 21 19 27 27 C 1.46955 * 110.87757 * 300.67978 * 17 16 15 28 28 C 1.46954 * 111.00011 * 290.87679 * 14 2 1 29 29 H 1.08998 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47310 * 300.00472 * 1 2 3 31 31 H 1.09004 * 109.46371 * 60.00655 * 1 2 3 32 32 H 1.07998 * 119.99559 * 0.27201 * 5 4 2 33 33 H 1.08007 * 119.99444 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.00397 * 180.10808 * 7 6 5 35 35 H 1.09003 * 109.47129 * 29.97967 * 9 8 7 36 36 H 1.08998 * 109.47110 * 149.97600 * 9 8 7 37 37 H 1.08999 * 109.47034 * 59.99855 * 11 10 9 38 38 H 1.08997 * 109.46515 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.46635 * 299.99785 * 11 10 9 40 40 H 1.09000 * 109.47085 * 60.00273 * 12 10 9 41 41 H 1.09002 * 109.46818 * 179.97438 * 12 10 9 42 42 H 1.08994 * 109.47410 * 300.00217 * 12 10 9 43 43 H 1.08001 * 119.99977 * 359.70434 * 13 4 2 44 44 H 1.09000 * 109.49412 * 296.77446 * 15 14 2 45 45 H 1.09007 * 109.49186 * 56.84461 * 15 14 2 46 46 H 1.08995 * 109.48598 * 298.43096 * 16 15 14 47 47 H 1.09006 * 109.48356 * 178.37175 * 16 15 14 48 48 H 1.08999 * 109.47024 * 179.14483 * 18 17 16 49 49 H 1.09007 * 109.47393 * 299.14573 * 18 17 16 50 50 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 51 51 H 1.09006 * 109.48860 * 299.34880 * 27 17 16 52 52 H 1.08999 * 109.48692 * 179.28948 * 27 17 16 53 53 H 1.09001 * 109.48543 * 303.15957 * 28 14 2 54 54 H 1.08997 * 109.49358 * 63.19867 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 3.3262 -1.1968 -1.2681 6 6 3.7892 -1.8420 -2.3992 7 6 2.9579 -2.0035 -3.4921 8 6 1.6645 -1.5178 -3.4542 9 6 0.7586 -1.6933 -4.6457 10 7 0.9029 -0.5404 -5.5446 11 6 2.2486 -0.4964 -6.1322 12 6 -0.1281 -0.5563 -6.5909 13 6 1.2017 -0.8711 -2.3233 14 7 2.0197 -0.6925 1.1996 15 6 1.4472 -2.0423 1.2989 16 6 2.0416 -2.7573 2.5147 17 7 1.7562 -1.9768 3.7267 18 6 2.2458 -2.6692 4.9261 19 6 3.7325 -2.8861 4.8094 20 1 4.2489 -2.6100 3.9018 21 6 4.4336 -3.4370 5.8610 22 7 3.8049 -3.7728 6.9662 23 14 6.2766 -3.7051 5.7165 24 1 6.9493 -2.4026 5.4801 25 1 6.7895 -4.3056 6.9740 26 1 6.5562 -4.6199 4.5806 27 6 2.3286 -0.6270 3.6272 28 6 1.7342 0.0880 2.4116 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 3.9752 -1.0713 -0.4141 33 1 4.7999 -2.2215 -2.4287 34 1 3.3192 -2.5092 -4.3753 35 1 1.0303 -2.6051 -5.1776 36 1 -0.2755 -1.7638 -4.3086 37 1 2.4262 -1.4084 -6.7021 38 1 2.3281 0.3663 -6.7936 39 1 2.9897 -0.4146 -5.3371 40 1 -1.1148 -0.5181 -6.1293 41 1 0.0017 0.3082 -7.2420 42 1 -0.0366 -1.4704 -7.1774 43 1 0.1910 -0.4916 -2.2937 44 1 0.3654 -1.9712 1.4119 45 1 1.6827 -2.6046 0.3952 46 1 3.1201 -2.8527 2.3890 47 1 1.5969 -3.7482 2.6070 48 1 2.0352 -2.0629 5.8071 49 1 1.7444 -3.6326 5.0197 50 1 4.2982 -4.1601 7.7063 51 1 3.4104 -0.6981 3.5144 52 1 2.0931 -0.0647 4.5308 53 1 2.1789 1.0789 2.3190 54 1 0.6557 0.1837 2.5369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926808050.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:44 Heat of formation + Delta-G solvation = 28.988808 kcal Electronic energy + Delta-G solvation = -29219.119630 eV Core-core repulsion = 25576.045186 eV Total energy + Delta-G solvation = -3643.074444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.15204 -39.91618 -38.15591 -37.00172 -34.71494 -33.00050 -32.56077 -31.73517 -30.12463 -28.90738 -28.41697 -27.65115 -26.68060 -24.78726 -24.43819 -23.39744 -23.24141 -21.91809 -21.06557 -20.11444 -18.37746 -17.59094 -17.21424 -16.63040 -16.53066 -16.33383 -16.30216 -15.86551 -15.75299 -15.61676 -15.45466 -15.04354 -14.83642 -14.69885 -14.37298 -14.06708 -13.58853 -13.57181 -13.46251 -13.22869 -13.14881 -12.90349 -12.88031 -12.81209 -12.64849 -12.55873 -12.51856 -12.40494 -12.33404 -12.14421 -11.92208 -11.81374 -11.74368 -11.65679 -11.43980 -11.22932 -10.60561 -9.64307 -9.52558 -9.22580 -9.20329 -8.97858 -8.15299 -6.34567 0.49780 0.57689 1.35999 1.37443 1.45739 2.36985 2.76547 3.00157 3.09061 3.31731 3.39950 3.74220 3.88931 4.04792 4.06689 4.21268 4.28113 4.29788 4.30951 4.38944 4.40146 4.46956 4.49888 4.52931 4.58455 4.60866 4.63583 4.72283 4.73915 4.78254 4.82306 4.87220 4.90742 5.01433 5.04638 5.05954 5.12871 5.14907 5.20751 5.23925 5.25353 5.26337 5.32630 5.36691 5.67189 5.71926 5.73145 5.79561 6.04356 6.04753 6.11341 6.15617 6.17384 6.22536 6.35280 6.53983 6.86015 7.36461 8.86812 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.002552 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.547485 B =10969.236179 C =11816.483502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 H 0.096 0.904 4 C -0.079 4.079 5 C -0.106 4.106 6 C -0.132 4.132 7 C -0.118 4.118 8 C -0.087 4.087 9 C 0.098 3.902 10 N -0.556 5.556 11 C 0.021 3.979 12 C 0.024 3.976 13 C -0.101 4.101 14 N -0.535 5.535 15 C 0.077 3.923 16 C 0.068 3.932 17 N -0.541 5.541 18 C 0.200 3.800 19 C -0.553 4.553 20 H 0.055 0.945 21 C 0.011 3.989 22 N -0.926 5.926 23 Si 0.957 3.043 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.271 1.271 27 C 0.066 3.934 28 C 0.070 3.930 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.134 0.866 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.022 0.978 47 H 0.057 0.943 48 H 0.007 0.993 49 H 0.001 0.999 50 H 0.265 0.735 51 H 0.021 0.979 52 H 0.063 0.937 53 H 0.091 0.909 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 8.064 -27.408 29.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.015 3.985 3 H 0.114 0.886 4 C -0.080 4.080 5 C -0.124 4.124 6 C -0.150 4.150 7 C -0.137 4.137 8 C -0.087 4.087 9 C -0.029 4.029 10 N -0.280 5.280 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.119 4.119 14 N -0.259 5.259 15 C -0.051 4.051 16 C -0.061 4.061 17 N -0.265 5.265 18 C 0.074 3.926 19 C -0.592 4.592 20 H 0.073 0.927 21 C -0.188 4.188 22 N -0.566 5.566 23 Si 0.782 3.218 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.196 1.196 27 C -0.062 4.062 28 C -0.058 4.058 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.152 0.848 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.025 0.975 49 H 0.020 0.980 50 H 0.074 0.926 51 H 0.039 0.961 52 H 0.081 0.919 53 H 0.109 0.891 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.827 8.422 -26.958 29.056 hybrid contribution 1.335 -1.255 0.298 1.856 sum -5.492 7.167 -26.660 28.148 Atomic orbital electron populations 1.22442 0.95800 1.02465 1.02960 1.20554 0.93636 0.97286 0.87051 0.88585 1.19797 0.94092 0.99166 0.94937 1.21087 0.95896 0.97700 0.97745 1.21288 1.00408 0.99755 0.93524 1.21156 0.93575 1.00400 0.98531 1.19793 0.94770 0.98830 0.95354 1.21025 0.99122 0.91608 0.91143 1.61989 1.04368 1.41885 1.19728 1.22454 0.90184 1.00867 0.99159 1.22434 0.95232 1.01065 0.93653 1.21074 1.00079 0.98565 0.92216 1.62272 1.58889 1.02542 1.02244 1.21984 0.96852 0.89694 0.96591 1.21920 0.98181 0.96233 0.89788 1.62621 1.57619 1.03160 1.03082 1.19383 0.92513 0.92627 0.88124 1.21924 0.95280 1.41447 1.00546 0.92702 1.25814 1.03042 0.95094 0.94898 1.70060 1.37843 1.43287 1.05397 0.85632 0.80054 0.78622 0.77531 1.19587 1.20582 1.19624 1.21936 0.96767 0.90046 0.97486 1.22107 0.99045 0.96521 0.88142 0.92490 0.92200 0.90140 0.86858 0.85455 0.85344 0.93568 0.89359 0.95147 0.90857 0.91782 0.90764 0.90651 0.95216 0.84822 0.93817 0.90607 0.95998 0.92417 0.97463 0.98048 0.92620 0.96056 0.91892 0.89068 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 7.42 71.98 0.53 -2.96 16 2 C 0.12 2.81 2.71 44.17 0.12 2.93 16 3 H 0.10 2.09 8.04 -2.39 -0.02 2.07 16 4 C -0.08 -1.84 4.43 -19.87 -0.09 -1.93 16 5 C -0.11 -2.66 8.89 22.27 0.20 -2.46 16 6 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 7 C -0.12 -2.27 7.97 22.27 0.18 -2.09 16 8 C -0.09 -1.65 4.88 -19.87 -0.10 -1.74 16 9 C 0.10 1.49 5.12 85.56 0.44 1.92 16 10 N -0.56 -8.31 5.01 -953.47 -4.78 -13.08 16 11 C 0.02 0.29 9.14 127.69 1.17 1.46 16 12 C 0.02 0.26 9.57 127.69 1.22 1.48 16 13 C -0.10 -2.04 8.78 22.27 0.20 -1.85 16 14 N -0.54 -15.52 3.94 -874.85 -3.45 -18.97 16 15 C 0.08 2.43 4.72 86.31 0.41 2.84 16 16 C 0.07 2.75 5.24 86.31 0.45 3.20 16 17 N -0.54 -24.04 4.92 -900.28 -4.43 -28.47 16 18 C 0.20 10.86 5.14 85.56 0.44 11.30 16 19 C -0.55 -31.44 7.67 25.60 0.20 -31.24 16 20 H 0.05 3.12 5.81 -2.91 -0.02 3.10 16 21 C 0.01 0.62 5.46 84.66 0.46 1.08 16 22 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 23 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.07 2.63 5.32 86.31 0.46 3.09 16 28 C 0.07 2.09 5.32 86.31 0.46 2.55 16 29 H 0.06 1.21 6.40 -2.39 -0.02 1.19 16 30 H 0.06 1.20 6.72 -2.39 -0.02 1.18 16 31 H 0.08 1.28 6.69 -2.38 -0.02 1.26 16 32 H 0.11 3.23 7.72 -2.91 -0.02 3.20 16 33 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.13 1.99 8.03 -2.91 -0.02 1.97 16 35 H 0.05 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.09 1.21 8.01 -2.39 -0.02 1.19 16 37 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 39 H 0.06 1.02 6.17 -2.39 -0.01 1.00 16 40 H 0.07 0.71 8.12 -2.39 -0.02 0.70 16 41 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.13 2.36 5.98 -2.91 -0.02 2.34 16 44 H 0.04 1.35 6.42 -2.39 -0.02 1.33 16 45 H 0.08 2.31 6.87 -2.38 -0.02 2.29 16 46 H 0.02 1.00 6.45 -2.39 -0.02 0.98 16 47 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 48 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 49 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 50 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 51 H 0.02 0.95 6.96 -2.38 -0.02 0.93 16 52 H 0.06 2.50 8.12 -2.39 -0.02 2.49 16 53 H 0.09 2.34 8.08 -2.39 -0.02 2.32 16 54 H 0.05 1.32 6.73 -2.39 -0.02 1.31 16 Total: -1.00 -64.05 404.54 -2.52 -66.57 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.85 Total: 17.82 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 6.97 Total: -15.10 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -12.37 Total: -116.26 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.05 -2.52 -66.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926808050.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.561 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds