Wall clock time and date at job start Tue Mar 31 2020 16:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47375 * 2 1 4 4 C 1.53007 * 109.47163 * 239.99264 * 2 1 3 5 5 C 1.53004 * 109.46889 * 175.00105 * 4 2 1 6 6 C 1.50698 * 109.46652 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00406 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99931 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99795 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00139 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47312 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47060 * 120.00689 * 10 8 6 13 13 H 1.48505 * 109.47297 * 240.00434 * 10 8 6 14 14 N 1.46905 * 109.46893 * 119.99736 * 2 1 3 15 15 C 1.46898 * 111.00082 * 274.99821 * 14 2 1 16 16 C 1.52996 * 109.47287 * 179.97438 * 15 14 2 17 17 N 1.46898 * 109.47287 * 179.97438 * 16 15 14 18 18 C 1.46961 * 110.99861 * 169.99841 * 17 16 15 19 19 C 1.53049 * 109.36181 * 183.18775 * 18 17 16 20 20 N 1.46965 * 109.36659 * 301.60325 * 19 18 17 21 21 C 1.39677 * 110.99759 * 183.18867 * 20 19 18 22 22 C 1.38912 * 120.07048 * 179.97438 * 21 20 19 23 23 C 1.38099 * 119.92393 * 180.02562 * 22 21 20 24 24 C 1.38285 * 120.07607 * 0.02562 * 23 22 21 25 25 C 1.38288 * 120.14912 * 359.97438 * 24 23 22 26 26 C 1.38107 * 120.07582 * 0.02562 * 25 24 23 27 27 C 1.46955 * 110.87927 * 59.32047 * 20 19 18 28 28 C 1.46950 * 111.00121 * 293.80252 * 17 16 15 29 29 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47293 * 300.00360 * 1 2 3 31 31 H 1.09001 * 109.46899 * 60.00554 * 1 2 3 32 32 H 1.08999 * 109.47493 * 295.00488 * 4 2 1 33 33 H 1.08998 * 109.46723 * 55.00584 * 4 2 1 34 34 H 1.08999 * 109.47365 * 300.00461 * 5 4 2 35 35 H 1.09003 * 109.46600 * 60.00532 * 5 4 2 36 36 H 0.96998 * 120.00097 * 179.97438 * 9 8 6 37 37 H 1.00896 * 110.99918 * 151.03893 * 14 2 1 38 38 H 1.09001 * 109.46531 * 59.99974 * 15 14 2 39 39 H 1.09001 * 109.47004 * 300.00106 * 15 14 2 40 40 H 1.09001 * 109.47172 * 59.99999 * 16 15 14 41 41 H 1.09001 * 109.47303 * 300.00067 * 16 15 14 42 42 H 1.08998 * 109.48396 * 63.22463 * 18 17 16 43 43 H 1.08992 * 109.48955 * 303.15338 * 18 17 16 44 44 H 1.09002 * 109.49137 * 181.63280 * 19 18 17 45 45 H 1.09007 * 109.49063 * 61.56507 * 19 18 17 46 46 H 1.08001 * 120.03609 * 0.02562 * 22 21 20 47 47 H 1.07995 * 119.96581 * 179.97438 * 23 22 21 48 48 H 1.07998 * 119.92755 * 179.72532 * 24 23 22 49 49 H 1.07997 * 119.96260 * 179.97438 * 25 24 23 50 50 H 1.07996 * 120.03841 * 180.02562 * 26 25 24 51 51 H 1.09006 * 109.48950 * 60.64738 * 27 20 19 52 52 H 1.09000 * 109.48705 * 180.71100 * 27 20 19 53 53 H 1.08998 * 109.48829 * 296.77675 * 28 17 16 54 54 H 1.09002 * 109.48906 * 56.83876 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 6 4.0671 -1.3235 -2.5443 7 1 3.3686 -1.8033 -3.2138 8 6 5.4183 -1.3596 -2.8162 9 7 6.2689 -0.7748 -2.0012 10 14 6.0408 -2.2391 -4.3420 11 1 4.8909 -2.8099 -5.0882 12 1 6.7635 -1.2742 -5.2094 13 1 6.9633 -3.3320 -3.9418 14 7 2.0196 -0.6925 1.1995 15 6 2.0824 0.2226 2.3469 16 6 2.5949 -0.5330 3.5745 17 7 2.6583 0.3822 4.7218 18 6 2.9166 -0.3525 5.9680 19 6 2.8962 0.6239 7.1464 20 7 3.9099 1.6664 6.9331 21 6 3.9701 2.5367 8.0239 22 6 4.8688 3.5959 8.0205 23 6 4.9261 4.4542 9.1009 24 6 4.0906 4.2598 10.1856 25 6 3.1948 3.2063 10.1922 26 6 3.1322 2.3442 9.1151 27 6 3.6515 2.4011 5.6869 28 6 3.6719 1.4246 4.5085 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.7516 -1.7717 -1.2055 33 1 1.6054 -0.2619 -2.1369 34 1 3.8533 0.4368 -1.3573 35 1 3.9994 -1.0730 -0.4258 36 1 7.2195 -0.8006 -2.1922 37 1 2.9171 -1.1206 1.0288 38 1 1.0870 0.6164 2.5524 39 1 2.7588 1.0462 2.1182 40 1 3.5902 -0.9272 3.3693 41 1 1.9181 -1.3564 3.8031 42 1 3.8932 -0.8332 5.9109 43 1 2.1459 -1.1100 6.1100 44 1 3.1162 0.0859 8.0684 45 1 1.9109 1.0845 7.2200 46 1 5.5219 3.7480 7.1739 47 1 5.6248 5.2776 9.0992 48 1 4.1406 4.9298 11.0311 49 1 2.5440 3.0570 11.0410 50 1 2.4321 1.5219 9.1207 51 1 2.6748 2.8818 5.7439 52 1 4.4222 3.1586 5.5449 53 1 4.6571 0.9641 4.4349 54 1 3.4519 1.9626 3.5864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478644.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:01 Heat of formation + Delta-G solvation = 13.155894 kcal Electronic energy + Delta-G solvation = -27962.915846 eV Core-core repulsion = 24319.154835 eV Total energy + Delta-G solvation = -3643.761011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.38740 -39.52666 -38.55525 -36.63516 -35.23898 -33.40381 -32.63572 -31.43502 -31.36789 -30.53898 -28.50863 -27.09135 -26.08292 -25.20803 -23.41311 -23.04855 -22.57138 -22.09206 -21.08269 -20.76667 -18.70008 -18.53540 -17.11433 -16.95288 -16.68011 -16.55877 -16.35072 -16.11704 -15.88145 -15.78998 -15.32031 -14.95971 -14.92948 -14.56475 -14.47919 -14.38878 -14.22120 -13.87858 -13.48333 -13.39830 -13.14967 -13.03716 -12.87295 -12.84153 -12.60599 -12.51550 -12.40100 -12.29290 -12.18174 -12.11486 -11.98882 -11.72763 -11.63081 -11.49843 -11.28842 -10.95231 -10.68936 -10.56967 -9.85020 -9.48353 -9.31894 -8.80793 -8.22058 -6.32427 0.45777 0.49442 1.38087 1.38684 1.51926 2.39356 2.58283 2.67025 2.96813 3.11169 3.43390 3.72692 3.84687 3.92629 4.02355 4.07481 4.08779 4.14145 4.19415 4.30181 4.30796 4.32833 4.41616 4.43811 4.49123 4.56821 4.58177 4.60393 4.70774 4.74458 4.77887 4.80630 4.85213 4.88544 4.94376 4.99612 5.02564 5.06733 5.10656 5.13229 5.21965 5.30710 5.44884 5.51864 5.52973 5.66783 5.68336 5.81207 5.82849 5.89075 5.97302 6.03733 6.21252 6.24886 6.34840 6.41859 6.84391 7.36805 8.89442 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.001940 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.471643 B =14430.715958 C =15432.096404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.088 3.912 3 H 0.026 0.974 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.541 4.541 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.687 5.687 15 C 0.071 3.929 16 C 0.068 3.932 17 N -0.537 5.537 18 C 0.056 3.944 19 C 0.060 3.940 20 N -0.503 5.503 21 C 0.097 3.903 22 C -0.158 4.158 23 C -0.102 4.102 24 C -0.155 4.155 25 C -0.100 4.100 26 C -0.181 4.181 27 C 0.071 3.929 28 C 0.052 3.948 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.057 0.943 34 H -0.017 1.017 35 H -0.002 1.002 36 H 0.262 0.738 37 H 0.337 0.663 38 H 0.082 0.918 39 H 0.015 0.985 40 H 0.020 0.980 41 H 0.091 0.909 42 H 0.033 0.967 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.057 0.943 46 H 0.123 0.877 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.136 0.864 51 H 0.050 0.950 52 H 0.090 0.910 53 H 0.030 0.970 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 8.092 25.252 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.021 4.021 3 H 0.044 0.956 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.320 5.320 15 C -0.058 4.058 16 C -0.060 4.060 17 N -0.262 5.262 18 C -0.072 4.072 19 C -0.067 4.067 20 N -0.219 5.219 21 C 0.000 4.000 22 C -0.178 4.178 23 C -0.120 4.120 24 C -0.173 4.173 25 C -0.118 4.118 26 C -0.202 4.202 27 C -0.054 4.054 28 C -0.076 4.076 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.001 0.999 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.101 0.899 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.110 0.890 42 H 0.051 0.949 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.140 0.860 47 H 0.158 0.842 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.154 0.846 51 H 0.068 0.932 52 H 0.108 0.892 53 H 0.048 0.952 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.141 7.820 25.351 28.061 hybrid contribution 1.907 0.077 -1.214 2.262 sum -7.235 7.897 24.138 26.407 Atomic orbital electron populations 1.21699 0.93010 1.02222 1.01517 1.21526 0.96519 0.94822 0.89276 0.95597 1.21653 0.96066 0.99936 0.96314 1.19008 0.92210 0.94383 0.95428 1.21727 0.92528 1.34424 1.09224 0.92287 1.25963 0.97406 0.96377 1.00079 1.70094 1.02704 1.45451 1.38985 0.85422 0.78426 0.78250 0.79098 1.18581 1.20489 1.20409 1.60622 1.33539 1.33020 1.04832 1.21873 1.00828 0.93309 0.89831 1.21917 0.99418 0.95026 0.89658 1.62144 1.47375 1.13942 1.02730 1.22252 1.00778 0.95856 0.88339 1.22354 0.93275 0.92488 0.98607 1.59258 1.47256 1.13086 1.02258 1.19152 0.95801 0.92598 0.92494 1.20981 0.99993 0.96257 1.00576 1.21298 0.98875 0.98847 0.93010 1.21406 0.97338 0.99251 0.99346 1.21330 0.98289 0.94152 0.98041 1.21521 1.00369 1.02698 0.95583 1.22204 1.01127 0.95196 0.86909 1.22237 0.93291 0.93820 0.98300 0.92212 0.92251 0.91936 0.92498 0.92393 0.99899 0.98339 0.92877 0.84409 0.89924 0.96690 0.96164 0.89044 0.94887 0.88085 0.88365 0.92432 0.85952 0.84231 0.84141 0.84002 0.84600 0.93158 0.89167 0.95188 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.41 71.98 0.68 -2.81 16 2 C 0.09 3.04 2.65 44.92 0.12 3.15 16 3 H 0.03 0.95 7.80 -2.39 -0.02 0.93 16 4 C -0.10 -4.20 4.74 30.60 0.15 -4.05 16 5 C 0.03 1.41 4.80 29.85 0.14 1.55 16 6 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 10 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 N -0.69 -22.84 6.31 -491.57 -3.10 -25.94 16 15 C 0.07 2.02 5.42 86.30 0.47 2.49 16 16 C 0.07 1.73 5.22 86.30 0.45 2.18 16 17 N -0.54 -12.18 4.71 -895.75 -4.22 -16.40 16 18 C 0.06 1.07 5.61 86.31 0.48 1.56 16 19 C 0.06 1.03 4.29 86.31 0.37 1.40 16 20 N -0.50 -10.26 4.75 -694.75 -3.30 -13.57 16 21 C 0.10 1.89 5.64 38.21 0.22 2.11 16 22 C -0.16 -2.93 9.19 22.40 0.21 -2.72 16 23 C -0.10 -1.55 10.04 22.25 0.22 -1.33 16 24 C -0.15 -2.11 10.04 22.29 0.22 -1.89 16 25 C -0.10 -1.40 10.04 22.25 0.22 -1.18 16 26 C -0.18 -3.01 8.82 22.40 0.20 -2.81 16 27 C 0.07 1.46 5.38 86.31 0.46 1.93 16 28 C 0.05 1.22 5.41 86.31 0.47 1.69 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.47 7.45 -2.39 -0.02 1.45 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.00 -0.09 6.43 -2.39 -0.02 -0.10 16 36 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.34 12.85 6.47 -89.70 -0.58 12.26 16 38 H 0.08 2.22 7.44 -2.39 -0.02 2.20 16 39 H 0.01 0.46 6.41 -2.39 -0.02 0.45 16 40 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 41 H 0.09 2.19 8.03 -2.39 -0.02 2.17 16 42 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 44 H 0.10 1.44 7.17 -2.39 -0.02 1.42 16 45 H 0.06 0.98 7.58 -2.38 -0.02 0.96 16 46 H 0.12 2.19 7.19 -2.91 -0.02 2.17 16 47 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 50 H 0.14 1.87 5.81 -2.91 -0.02 1.86 16 51 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 52 H 0.09 1.72 6.82 -2.39 -0.02 1.71 16 53 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.08 2.02 6.34 -2.39 -0.02 2.01 16 Total: -1.00 -64.73 413.67 -2.26 -66.99 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.27 Total: 27.79 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 5.77 Total: -29.00 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -10.34 Total: -112.39 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.73 -2.26 -66.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478644.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.148 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds