Wall clock time and date at job start Tue Mar 31 2020 16:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 111.00048 * 2 1 4 4 C 1.46897 * 111.00175 * 123.95558 * 2 1 3 5 5 C 1.52999 * 109.47221 * 170.00267 * 4 2 1 6 6 C 1.53004 * 109.47145 * 179.97438 * 5 4 2 7 7 N 1.46905 * 109.47195 * 179.97438 * 6 5 4 8 8 C 1.46953 * 111.00128 * 169.99725 * 7 6 5 9 9 C 1.53043 * 109.36397 * 176.81181 * 8 7 6 10 10 N 1.46958 * 109.36548 * 58.40762 * 9 8 7 11 11 C 1.46895 * 111.00087 * 176.81106 * 10 9 8 12 12 C 1.50700 * 109.47248 * 169.99814 * 11 10 9 13 13 C 1.37637 * 120.12677 * 259.72586 * 12 11 10 14 14 C 1.38622 * 120.24935 * 179.69912 * 13 12 11 15 15 C 1.38650 * 120.49589 * 0.59889 * 14 13 12 16 16 C 1.37598 * 120.25117 * 359.67857 * 15 14 13 17 17 C 1.40695 * 120.13157 * 79.99758 * 12 11 10 18 18 C 1.41398 * 120.24091 * 0.02562 * 17 12 11 19 19 H 1.07997 * 120.00066 * 334.16635 * 18 17 12 20 20 C 1.39945 * 119.99853 * 154.15927 * 18 17 12 21 21 N 1.30828 * 120.00200 * 343.54404 * 20 18 17 22 22 Si 1.86803 * 119.99900 * 163.54253 * 20 18 17 23 23 H 1.48493 * 109.47398 * 90.00082 * 22 20 18 24 24 H 1.48501 * 109.47053 * 210.00571 * 22 20 18 25 25 H 1.48505 * 109.46859 * 329.99846 * 22 20 18 26 26 C 1.46961 * 110.87548 * 300.67357 * 10 9 8 27 27 C 1.46960 * 110.99680 * 46.19914 * 7 6 5 28 28 H 1.08992 * 109.47563 * 296.04403 * 1 2 3 29 29 H 1.08999 * 109.47439 * 56.04703 * 1 2 3 30 30 H 1.09003 * 109.47036 * 176.04399 * 1 2 3 31 31 H 1.08996 * 109.47037 * 183.95343 * 3 2 1 32 32 H 1.09001 * 109.46757 * 303.95331 * 3 2 1 33 33 H 1.09003 * 109.46637 * 63.95127 * 3 2 1 34 34 H 1.08998 * 109.47402 * 50.00112 * 4 2 1 35 35 H 1.09000 * 109.46718 * 289.99757 * 4 2 1 36 36 H 1.09000 * 109.47561 * 59.99757 * 5 4 2 37 37 H 1.09003 * 109.46993 * 300.00167 * 5 4 2 38 38 H 1.08996 * 109.47026 * 60.00236 * 6 5 4 39 39 H 1.08995 * 109.47054 * 299.99838 * 6 5 4 40 40 H 1.08999 * 109.48482 * 56.84238 * 8 7 6 41 41 H 1.09002 * 109.48805 * 296.78134 * 8 7 6 42 42 H 1.09004 * 109.48832 * 178.37217 * 9 8 7 43 43 H 1.08995 * 109.49231 * 298.41585 * 9 8 7 44 44 H 1.08998 * 109.47112 * 289.99620 * 11 10 9 45 45 H 1.08996 * 109.47330 * 49.99779 * 11 10 9 46 46 H 1.08004 * 119.87554 * 359.97438 * 13 12 11 47 47 H 1.07992 * 119.74710 * 180.30078 * 14 13 12 48 48 H 1.08004 * 119.87296 * 179.70604 * 15 14 13 49 49 H 1.08007 * 120.12767 * 180.02562 * 16 15 14 50 50 H 0.97000 * 119.99828 * 180.02562 * 21 20 18 51 51 H 1.09002 * 109.48431 * 179.28316 * 26 10 9 52 52 H 1.08995 * 109.49191 * 299.35178 * 26 10 9 53 53 H 1.08999 * 109.48811 * 63.22147 * 27 7 6 54 54 H 1.09001 * 109.51014 * 303.16918 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9703 6 6 4.0529 -1.7526 2.1554 7 7 5.5017 -1.9348 1.9946 8 6 6.1023 -2.4847 3.2178 9 6 7.5940 -2.7335 2.9831 10 7 8.2444 -1.4721 2.6016 11 6 9.6931 -1.6544 2.4407 12 6 10.2887 -0.4184 1.8172 13 6 10.5788 -0.3946 0.4720 14 6 11.1210 0.7431 -0.1054 15 6 11.3887 1.8641 0.6654 16 6 11.1120 1.8607 2.0133 17 6 10.5558 0.7135 2.6090 18 6 10.2677 0.6983 3.9932 19 1 9.4984 0.0451 4.3776 20 6 10.9797 1.5298 4.8652 21 7 12.1052 2.0730 4.4782 22 14 10.3229 1.8640 6.5817 23 1 10.8511 0.8428 7.5215 24 1 10.7559 3.2141 7.0232 25 1 8.8392 1.8010 6.5650 26 6 7.6437 -0.9223 1.3782 27 6 6.1519 -0.6734 1.6130 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 1.5090 -1.7407 1.1756 35 1 1.7975 -0.2247 2.0627 36 1 3.9909 0.0194 0.9323 37 1 3.7024 -1.4964 0.0450 38 1 3.5665 -2.7272 2.1938 39 1 3.8549 -1.2110 3.0804 40 1 5.6125 -3.4244 3.4728 41 1 5.9763 -1.7750 4.0355 42 1 8.0476 -3.1143 3.8982 43 1 7.7195 -3.4639 2.1839 44 1 10.1484 -1.8246 3.4163 45 1 9.8820 -2.5132 1.7968 46 1 10.3792 -1.2640 -0.1369 47 1 11.3409 0.7546 -1.1626 48 1 11.8155 2.7434 0.2060 49 1 11.3209 2.7352 2.6117 50 1 12.5988 2.6489 5.0828 51 1 8.1335 0.0176 1.1234 52 1 7.7698 -1.6318 0.5605 53 1 6.0264 0.0568 2.4125 54 1 5.6984 -0.2923 0.6980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235530945.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:22 Heat of formation + Delta-G solvation = 20.982169 kcal Electronic energy + Delta-G solvation = -29185.100623 eV Core-core repulsion = 25541.678985 eV Total energy + Delta-G solvation = -3643.421638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.62066 -39.41325 -38.52059 -36.61304 -35.44730 -33.35538 -31.78910 -31.75421 -31.18477 -28.68538 -28.47695 -27.15259 -26.16219 -25.00483 -24.23271 -22.79658 -22.70525 -21.51142 -21.22981 -20.51352 -18.97098 -17.48497 -17.13527 -16.74979 -16.43989 -16.29194 -15.97334 -15.91622 -15.78688 -15.69698 -15.28591 -15.24351 -14.94245 -14.73754 -14.43605 -14.27447 -13.53464 -13.42795 -13.30895 -13.20846 -12.98856 -12.86271 -12.83670 -12.71737 -12.66672 -12.54439 -12.40259 -12.31392 -12.24628 -12.10574 -12.06425 -11.73748 -11.56985 -11.30839 -11.29695 -11.03213 -10.95230 -9.33756 -9.31433 -9.23205 -9.19573 -8.95800 -8.55442 -6.20972 1.01583 1.14240 1.38910 1.49702 1.56571 2.23992 2.80734 2.81896 3.13007 3.18580 3.86812 3.89028 4.01634 4.10146 4.15891 4.19893 4.26847 4.32865 4.37519 4.43999 4.46890 4.51983 4.53156 4.56078 4.60694 4.64612 4.65758 4.70874 4.74999 4.76009 4.81531 4.88528 4.89733 5.00039 5.00905 5.02037 5.10170 5.11587 5.19384 5.23311 5.30638 5.31079 5.41839 5.57271 5.81265 6.00226 6.03125 6.04973 6.10359 6.13545 6.22803 6.26653 6.35664 6.42644 6.49685 6.81713 7.08164 7.15726 8.40954 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.002955 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.319068 B = 9474.136284 C = 9864.639245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.563 5.563 3 C 0.020 3.980 4 C 0.061 3.939 5 C -0.111 4.111 6 C 0.062 3.938 7 N -0.541 5.541 8 C 0.065 3.935 9 C 0.057 3.943 10 N -0.540 5.540 11 C 0.135 3.865 12 C -0.199 4.199 13 C -0.089 4.089 14 C -0.243 4.243 15 C -0.113 4.113 16 C -0.193 4.193 17 C 0.101 3.899 18 C -0.468 4.468 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.830 5.830 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.272 1.272 25 H -0.263 1.263 26 C 0.073 3.927 27 C 0.065 3.935 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.100 0.900 41 H 0.029 0.971 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.283 0.717 51 H 0.060 0.940 52 H 0.029 0.971 53 H 0.022 0.978 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.740 -6.104 -3.506 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.287 5.287 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.149 4.149 6 C -0.066 4.066 7 N -0.266 5.266 8 C -0.064 4.064 9 C -0.071 4.071 10 N -0.265 5.265 11 C 0.009 3.991 12 C -0.201 4.201 13 C -0.108 4.108 14 C -0.263 4.263 15 C -0.132 4.132 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.498 4.498 19 H 0.104 0.896 20 C -0.180 4.180 21 N -0.457 5.457 22 Si 0.793 3.207 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.187 1.187 26 C -0.055 4.055 27 C -0.063 4.063 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.121 0.879 49 H 0.114 0.886 50 H 0.094 0.906 51 H 0.078 0.922 52 H 0.047 0.953 53 H 0.040 0.960 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.400 -6.205 -3.837 19.793 hybrid contribution 0.180 1.044 1.490 1.828 sum -18.220 -5.161 -2.347 19.081 Atomic orbital electron populations 1.22421 0.86212 1.02909 1.00845 1.61982 1.08925 1.14295 1.43472 1.22451 1.00973 0.88638 1.00743 1.22056 0.95020 0.98655 0.90989 1.21624 0.94643 0.99993 0.98652 1.22084 0.86938 1.00787 0.96830 1.62286 1.03825 1.26742 1.33774 1.22128 0.93776 1.00188 0.90261 1.22186 0.94201 0.90219 1.00532 1.62174 1.03129 1.27160 1.34015 1.20465 0.86800 0.93264 0.98606 1.19761 1.10493 0.95811 0.94018 1.20673 0.98921 0.97181 0.93993 1.20651 1.11481 0.95267 0.98867 1.20919 1.00151 0.97926 0.94174 1.21319 1.07124 0.98921 0.93940 1.17696 0.88832 0.90104 0.93541 1.19836 1.17544 1.20289 0.92129 0.89628 1.26706 0.93519 0.93422 1.04389 1.69904 1.11876 1.25170 1.38765 0.85364 0.79618 0.78321 0.77362 1.18834 1.19637 1.18701 1.21938 0.93807 0.99207 0.90542 1.22143 0.93359 0.90588 1.00243 0.95552 0.90700 0.90592 0.91698 0.90567 0.95712 0.89646 0.95079 0.92449 0.91040 0.89183 0.95282 0.88180 0.95282 0.90086 0.94435 0.92138 0.95498 0.87571 0.87003 0.87888 0.88632 0.90619 0.92171 0.95286 0.96008 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.57 127.69 1.22 1.54 16 2 N -0.56 -9.91 5.02 -948.87 -4.76 -14.67 16 3 C 0.02 0.34 9.32 127.69 1.19 1.53 16 4 C 0.06 1.03 4.96 86.30 0.43 1.46 16 5 C -0.11 -2.17 4.40 30.60 0.13 -2.03 16 6 C 0.06 1.25 5.28 86.30 0.46 1.71 16 7 N -0.54 -13.97 4.86 -895.72 -4.35 -18.33 16 8 C 0.06 1.66 5.58 86.31 0.48 2.14 16 9 C 0.06 1.68 5.58 86.31 0.48 2.16 16 10 N -0.54 -20.02 4.59 -900.30 -4.13 -24.15 16 11 C 0.14 5.53 4.61 85.56 0.39 5.93 16 12 C -0.20 -9.32 3.75 -19.41 -0.07 -9.39 16 13 C -0.09 -3.87 8.70 22.22 0.19 -3.68 16 14 C -0.24 -10.65 10.05 22.46 0.23 -10.43 16 15 C -0.11 -5.37 10.02 22.22 0.22 -5.15 16 16 C -0.19 -10.33 8.68 22.73 0.20 -10.13 16 17 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 18 C -0.47 -24.86 8.18 23.46 0.19 -24.67 16 19 H 0.09 4.49 6.85 -2.91 -0.02 4.47 16 20 C 0.03 1.70 5.16 85.26 0.44 2.14 16 21 N -0.83 -44.11 10.97 21.83 0.24 -43.87 16 22 Si 0.97 39.34 29.59 68.60 2.03 41.37 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 C 0.07 2.62 4.89 86.31 0.42 3.04 16 27 C 0.06 1.96 4.93 86.31 0.43 2.38 16 28 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.06 1.21 6.47 -2.39 -0.02 1.20 16 32 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 33 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.09 1.24 8.06 -2.39 -0.02 1.22 16 35 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.06 1.25 4.67 -2.39 -0.01 1.24 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 40 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 2.64 7.34 -2.39 -0.02 2.63 16 45 H 0.03 1.02 7.93 -2.39 -0.02 1.00 16 46 H 0.11 4.07 8.03 -2.91 -0.02 4.05 16 47 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 48 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 49 H 0.10 5.39 6.21 -2.91 -0.02 5.37 16 50 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 51 H 0.06 2.52 6.23 -2.39 -0.01 2.50 16 52 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.09 2.46 5.99 -2.39 -0.01 2.45 16 Total: -1.00 -58.75 409.76 -3.22 -61.97 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.84 Total: 33.88 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 6.92 Total: -36.21 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -13.01 Total: -101.01 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -58.75 -3.22 -61.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235530945.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.953 kcal (2) G-P(sol) polarization free energy of solvation -58.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds