Wall clock time and date at job start Tue Mar 31 2020 16:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 H 1.09002 * 109.46827 * 53.79883 * 3 2 1 5 5 C 1.50695 * 109.47138 * 173.80130 * 3 2 1 6 6 H 1.07999 * 120.00336 * 119.99957 * 5 3 2 7 7 C 1.37879 * 120.00038 * 299.99894 * 5 3 2 8 8 N 1.31510 * 119.99980 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99908 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46926 * 90.00169 * 9 7 5 11 11 H 1.48502 * 109.47182 * 210.00015 * 9 7 5 12 12 H 1.48491 * 109.47013 * 330.00429 * 9 7 5 13 13 N 1.46901 * 109.46951 * 293.80326 * 3 2 1 14 14 C 1.46898 * 111.00273 * 104.01469 * 13 3 2 15 15 C 1.50695 * 109.47131 * 85.31239 * 14 13 3 16 16 C 1.38255 * 120.00299 * 261.77204 * 15 14 13 17 17 C 1.38213 * 119.99988 * 179.74603 * 16 15 14 18 18 C 1.38248 * 120.00136 * 0.52951 * 17 16 15 19 19 C 1.38214 * 119.99886 * 359.74928 * 18 17 16 20 20 C 1.38217 * 119.99783 * 82.05019 * 15 14 13 21 21 C 1.50694 * 120.00033 * 359.97438 * 20 15 14 22 22 N 1.46908 * 109.47213 * 281.95064 * 21 20 15 23 23 C 1.46953 * 110.99563 * 288.27112 * 22 21 20 24 24 C 1.53053 * 109.36147 * 176.81370 * 23 22 21 25 25 N 1.46953 * 109.36558 * 58.39635 * 24 23 22 26 26 C 1.46908 * 111.00003 * 176.81379 * 25 24 23 27 27 C 1.46953 * 110.88533 * 300.67953 * 25 24 23 28 28 C 1.46953 * 111.00003 * 164.46835 * 22 21 20 29 29 H 1.08996 * 109.47603 * 299.87914 * 1 2 3 30 30 H 1.09002 * 109.47323 * 179.87605 * 1 2 3 31 31 H 1.09001 * 109.47271 * 59.87852 * 1 2 3 32 32 H 1.09002 * 109.47088 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47326 * 239.99763 * 2 1 3 34 34 H 0.97002 * 119.99657 * 180.02562 * 8 7 5 35 35 H 1.00904 * 110.99695 * 227.97116 * 13 3 2 36 36 H 1.09003 * 109.46933 * 205.31655 * 14 13 3 37 37 H 1.08999 * 109.46944 * 325.31468 * 14 13 3 38 38 H 1.07999 * 119.99966 * 0.02562 * 16 15 14 39 39 H 1.08003 * 119.99829 * 180.29456 * 17 16 15 40 40 H 1.07995 * 120.00305 * 179.76556 * 18 17 16 41 41 H 1.08002 * 119.99918 * 180.02562 * 19 18 17 42 42 H 1.09002 * 109.47644 * 41.94779 * 21 20 15 43 43 H 1.09001 * 109.47319 * 161.94726 * 21 20 15 44 44 H 1.09001 * 109.49143 * 296.77281 * 23 22 21 45 45 H 1.08989 * 109.49454 * 56.84424 * 23 22 21 46 46 H 1.09005 * 109.48844 * 298.43379 * 24 23 22 47 47 H 1.08997 * 109.50986 * 178.37873 * 24 23 22 48 48 H 1.08997 * 109.47173 * 183.80134 * 26 25 24 49 49 H 1.08997 * 109.46717 * 303.80323 * 26 25 24 50 50 H 1.09000 * 109.46928 * 63.80168 * 26 25 24 51 51 H 1.09001 * 109.49143 * 299.35893 * 27 25 24 52 52 H 1.08994 * 109.51017 * 179.29516 * 27 25 24 53 53 H 1.09003 * 109.49351 * 303.15808 * 28 22 21 54 54 H 1.09005 * 109.48948 * 63.19898 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5889 1.9873 0.8293 5 6 3.5391 1.4452 0.1534 6 1 4.1597 1.8843 -0.6137 7 6 4.1185 0.8870 1.2731 8 7 5.4268 0.8898 1.4072 9 14 3.0452 0.1281 2.6004 10 1 2.8292 -1.3101 2.3000 11 1 3.7171 0.2631 3.9178 12 1 1.7360 0.8278 2.6383 13 7 1.6762 2.0905 -1.2672 14 6 0.5446 3.0089 -1.0831 15 6 1.0560 4.3509 -0.6267 16 6 1.0323 4.6796 0.7160 17 6 1.5062 5.9084 1.1351 18 6 1.9937 6.8133 0.2106 19 6 2.0121 6.4870 -1.1324 20 6 1.5433 5.2555 -1.5511 21 6 1.5639 4.8995 -3.0152 22 7 2.6982 4.0062 -3.2862 23 6 3.9722 4.7345 -3.2087 24 6 5.1299 3.7554 -3.4176 25 7 4.9815 3.0968 -4.7229 26 6 6.1159 2.2035 -4.9938 27 6 3.7075 2.3685 -4.8004 28 6 2.5498 3.3476 -4.5914 29 1 -0.3634 0.5119 0.8910 30 1 -0.3634 -1.0277 -0.0022 31 1 -0.3634 0.5157 -0.8889 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 5.8344 0.4968 2.1948 35 1 2.4685 2.5688 -1.6692 36 1 0.0132 3.1245 -2.0277 37 1 -0.1335 2.6038 -0.3319 38 1 0.6477 3.9743 1.4379 39 1 1.4921 6.1633 2.1846 40 1 2.3605 7.7749 0.5376 41 1 2.3933 7.1937 -1.8546 42 1 0.6339 4.3963 -3.2800 43 1 1.6670 5.8080 -3.6087 44 1 4.0004 5.5014 -3.9827 45 1 4.0644 5.2028 -2.2288 46 1 5.1179 3.0042 -2.6279 47 1 6.0749 4.2978 -3.3893 48 1 6.0150 1.7811 -5.9936 49 1 7.0461 2.7679 -4.9300 50 1 6.1281 1.3986 -4.2589 51 1 3.6793 1.6016 -4.0263 52 1 3.6151 1.8999 -5.7802 53 1 1.6049 2.8048 -4.6197 54 1 2.5614 4.0988 -5.3812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152767.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:09 Heat of formation + Delta-G solvation = 26.236125 kcal Electronic energy + Delta-G solvation = -31222.575811 eV Core-core repulsion = 27579.382002 eV Total energy + Delta-G solvation = -3643.193810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.99807 -39.70218 -37.98040 -36.47572 -34.67160 -33.60619 -32.57047 -31.79394 -31.23361 -29.44721 -29.00413 -26.32009 -25.64958 -24.48713 -24.12705 -23.93214 -22.84286 -21.67208 -21.10670 -20.53207 -18.96875 -17.49878 -17.28928 -17.03399 -16.56870 -16.16731 -15.96925 -15.82060 -15.75192 -15.54486 -15.16499 -14.98125 -14.96867 -14.67839 -14.49947 -13.98310 -13.82238 -13.66868 -13.54787 -13.39737 -13.28632 -13.06319 -12.89329 -12.78512 -12.66162 -12.56639 -12.42638 -12.18124 -12.06949 -11.94447 -11.76391 -11.72859 -11.62436 -11.41621 -11.16097 -10.95530 -10.67585 -9.67603 -9.58900 -9.40824 -9.14046 -8.73331 -8.28225 -6.28932 0.50390 0.57250 1.26472 1.30537 1.40867 2.30175 2.78545 3.00900 3.07214 3.20857 3.82192 3.95235 3.96781 4.00215 4.14258 4.16126 4.20948 4.24889 4.32747 4.44428 4.45478 4.49034 4.50775 4.55507 4.59097 4.63586 4.64634 4.67272 4.71955 4.79237 4.85511 4.90475 4.95792 4.97523 4.98361 5.02856 5.08931 5.15629 5.17087 5.23039 5.26450 5.33428 5.39634 5.59085 5.62700 5.67253 5.77422 5.83567 5.97343 6.01963 6.11713 6.19105 6.23875 6.28296 6.66151 6.79088 7.18962 7.38237 8.87986 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.005923 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.318152 B = 4726.576748 C = 6069.341396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.194 3.806 4 H -0.001 1.001 5 C -0.507 4.507 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.303 1.303 12 H -0.250 1.250 13 N -0.666 5.666 14 C 0.102 3.898 15 C -0.103 4.103 16 C -0.131 4.131 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.117 4.117 20 C -0.082 4.082 21 C 0.102 3.898 22 N -0.542 5.542 23 C 0.072 3.928 24 C 0.058 3.942 25 N -0.538 5.538 26 C 0.024 3.976 27 C 0.055 3.945 28 C 0.071 3.929 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.262 0.738 35 H 0.361 0.639 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.005 0.995 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.005 0.995 51 H 0.016 0.984 52 H 0.096 0.904 53 H 0.090 0.910 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 9.918 -11.235 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.084 3.916 4 H 0.016 0.984 5 C -0.546 4.546 6 H 0.050 0.950 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.231 1.231 12 H -0.175 1.175 13 N -0.300 5.300 14 C -0.027 4.027 15 C -0.106 4.106 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.136 4.136 20 C -0.083 4.083 21 C -0.024 4.024 22 N -0.267 5.267 23 C -0.056 4.056 24 C -0.070 4.070 25 N -0.262 5.262 26 C -0.124 4.124 27 C -0.073 4.073 28 C -0.057 4.057 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.186 0.814 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.023 0.977 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.024 0.976 51 H 0.035 0.965 52 H 0.114 0.886 53 H 0.108 0.892 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.386 9.314 -11.401 17.459 hybrid contribution 0.945 -0.075 1.928 2.148 sum -8.441 9.239 -9.473 15.695 Atomic orbital electron populations 1.21727 0.94893 1.01283 1.01608 1.21799 0.96188 0.98498 0.98953 1.19362 0.92100 0.91585 0.88590 0.98365 1.21567 0.92041 1.36555 1.04442 0.95034 1.25715 0.95766 0.96468 1.00233 1.70051 1.11223 1.47693 1.29853 0.85914 0.79701 0.79463 0.77645 1.19710 1.23100 1.17456 1.60913 1.12073 1.32572 1.24423 1.21165 0.94230 0.86750 1.00583 1.20793 0.99131 0.97261 0.93394 1.21187 1.01156 0.96965 0.95724 1.21332 0.99183 0.94099 1.00361 1.21325 1.00083 1.00188 0.93264 1.21266 0.99447 0.96528 0.96342 1.19785 0.99075 0.93785 0.95652 1.20982 0.94525 0.95795 0.91143 1.61853 1.01711 1.31406 1.31700 1.21973 0.88420 0.94612 1.00586 1.22091 0.98933 0.96726 0.89288 1.62352 1.03018 1.31297 1.29535 1.22390 0.93899 0.94982 1.01115 1.22207 0.88912 0.95136 1.01045 1.22082 0.98281 0.96565 0.88742 0.94062 0.92524 0.91010 0.95730 0.93050 0.92941 0.81392 0.89390 0.92005 0.87726 0.85339 0.84089 0.84360 0.88804 0.92281 0.92748 0.91838 0.97683 0.90040 0.89428 0.90752 0.97596 0.96517 0.88575 0.89188 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.94 71.98 0.64 -4.10 16 2 C -0.12 -5.09 5.10 30.59 0.16 -4.94 16 3 C 0.19 9.13 1.58 44.17 0.07 9.20 16 4 H 0.00 -0.06 5.64 -2.39 -0.01 -0.08 16 5 C -0.51 -29.34 9.18 25.60 0.24 -29.10 16 6 H 0.03 2.05 7.63 -2.91 -0.02 2.03 16 7 C 0.02 0.91 5.45 84.66 0.46 1.37 16 8 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 9 Si 0.94 47.00 24.42 68.60 1.68 48.68 16 10 H -0.27 -12.99 6.82 99.48 0.68 -12.31 16 11 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 12 H -0.25 -11.67 6.53 99.48 0.65 -11.02 16 13 N -0.67 -26.65 6.21 -499.48 -3.10 -29.75 16 14 C 0.10 3.36 4.67 85.56 0.40 3.76 16 15 C -0.10 -3.42 5.07 -19.87 -0.10 -3.52 16 16 C -0.13 -4.52 9.16 22.27 0.20 -4.31 16 17 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 18 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 19 C -0.12 -3.03 8.89 22.27 0.20 -2.83 16 20 C -0.08 -2.32 4.68 -19.87 -0.09 -2.42 16 21 C 0.10 2.42 4.48 85.55 0.38 2.81 16 22 N -0.54 -14.90 2.31 -900.28 -2.08 -16.98 16 23 C 0.07 2.06 5.43 86.31 0.47 2.53 16 24 C 0.06 1.87 5.62 86.31 0.49 2.36 16 25 N -0.54 -15.09 4.97 -921.93 -4.58 -19.67 16 26 C 0.02 0.63 9.60 127.69 1.23 1.86 16 27 C 0.06 1.50 5.62 86.31 0.49 1.98 16 28 C 0.07 1.69 5.59 86.31 0.48 2.17 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.28 6.84 -2.39 -0.02 2.27 16 32 H 0.02 1.15 3.22 -2.39 -0.01 1.14 16 33 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.36 15.42 5.05 -89.69 -0.45 14.97 16 36 H 0.09 2.47 6.50 -2.39 -0.02 2.45 16 37 H 0.06 2.04 6.39 -2.39 -0.02 2.03 16 38 H 0.10 3.71 7.71 -2.91 -0.02 3.68 16 39 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.14 2.81 8.02 -2.91 -0.02 2.79 16 42 H 0.09 2.04 6.38 -2.39 -0.02 2.02 16 43 H 0.06 1.17 7.90 -2.39 -0.02 1.15 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 2.01 6.79 -2.39 -0.02 1.99 16 46 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 47 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 48 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.07 1.76 8.13 -2.39 -0.02 1.75 16 50 H 0.01 0.17 8.14 -2.39 -0.02 0.15 16 51 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.09 1.98 8.02 -2.39 -0.02 1.96 16 54 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -67.97 399.65 -1.31 -69.28 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.33 Total: 38.63 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 6.15 Total: -30.15 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -9.46 Total: -126.45 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.68 Total: 48.68 kcal Total: -67.97 -1.31 -69.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152767.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.521 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds