Wall clock time and date at job start Tue Mar 31 2020 16:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47070 * 2 1 4 4 H 1.09001 * 109.47410 * 184.46219 * 3 2 1 5 5 C 1.50701 * 109.47393 * 304.45928 * 3 2 1 6 6 H 1.07998 * 119.99991 * 115.14596 * 5 3 2 7 7 C 1.37876 * 120.00021 * 295.15451 * 5 3 2 8 8 N 1.31514 * 120.00104 * 352.96189 * 7 5 3 9 9 Si 1.86799 * 120.00103 * 172.97130 * 7 5 3 10 10 H 1.48502 * 109.47198 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47050 * 299.99434 * 9 7 5 12 12 H 1.48497 * 109.47414 * 59.99648 * 9 7 5 13 13 N 1.46897 * 109.47301 * 64.45943 * 3 2 1 14 14 C 1.46899 * 110.99929 * 85.30098 * 13 3 2 15 15 C 1.50699 * 109.47214 * 185.03781 * 14 13 3 16 16 C 1.38254 * 120.00386 * 89.99906 * 15 14 13 17 17 C 1.38213 * 120.00320 * 179.97438 * 16 15 14 18 18 C 1.38263 * 119.99837 * 359.97438 * 17 16 15 19 19 C 1.38209 * 119.99775 * 0.02562 * 18 17 16 20 20 C 1.50707 * 119.99889 * 179.97438 * 19 18 17 21 21 N 1.46902 * 109.47113 * 89.99817 * 20 19 18 22 22 C 1.46962 * 110.99840 * 293.80351 * 21 20 19 23 23 C 1.53048 * 109.36075 * 176.81335 * 22 21 20 24 24 N 1.46959 * 109.36517 * 58.40049 * 23 22 21 25 25 C 1.46902 * 110.99820 * 176.81061 * 24 23 22 26 26 C 1.46957 * 110.87949 * 300.67211 * 24 23 22 27 27 C 1.46959 * 110.99820 * 170.00366 * 21 20 19 28 28 C 1.38219 * 119.99836 * 269.72824 * 15 14 13 29 29 H 1.09004 * 109.47114 * 305.53570 * 1 2 3 30 30 H 1.08997 * 109.47208 * 65.53992 * 1 2 3 31 31 H 1.09001 * 109.46937 * 185.53911 * 1 2 3 32 32 H 1.09009 * 109.47037 * 240.00466 * 2 1 3 33 33 H 1.08992 * 109.47619 * 120.00340 * 2 1 3 34 34 H 0.96996 * 120.00039 * 356.31660 * 8 7 5 35 35 H 1.00905 * 111.00328 * 209.25517 * 13 3 2 36 36 H 1.09003 * 109.47374 * 305.03471 * 14 13 3 37 37 H 1.08998 * 109.47277 * 65.03674 * 14 13 3 38 38 H 1.08000 * 120.00192 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.00242 * 180.02562 * 17 16 15 40 40 H 1.07997 * 119.99863 * 179.97438 * 18 17 16 41 41 H 1.08992 * 109.47023 * 210.00016 * 20 19 18 42 42 H 1.09001 * 109.46409 * 329.99979 * 20 19 18 43 43 H 1.09007 * 109.48650 * 296.77361 * 22 21 20 44 44 H 1.08993 * 109.48866 * 56.84363 * 22 21 20 45 45 H 1.09000 * 109.49115 * 298.43175 * 23 22 21 46 46 H 1.08997 * 109.49003 * 178.36481 * 23 22 21 47 47 H 1.09006 * 109.47171 * 183.79444 * 25 24 23 48 48 H 1.08997 * 109.47632 * 303.79644 * 25 24 23 49 49 H 1.08999 * 109.47402 * 63.79642 * 25 24 23 50 50 H 1.08998 * 109.49150 * 299.35922 * 26 24 23 51 51 H 1.08998 * 109.50272 * 179.29635 * 26 24 23 52 52 H 1.08997 * 109.48568 * 303.15637 * 27 21 20 53 53 H 1.09000 * 109.48874 * 63.21916 * 27 21 20 54 54 H 1.07994 * 120.00037 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1270 1.4436 -0.0800 5 6 1.4495 2.1841 -1.1715 6 1 0.7753 3.0108 -1.0030 7 6 1.7698 1.8071 -2.4584 8 7 2.6939 0.8945 -2.6656 9 14 0.8914 2.5926 -3.9078 10 1 1.4148 2.0192 -5.1738 11 1 -0.5657 2.3248 -3.8078 12 1 1.1274 4.0587 -3.8943 13 7 1.6402 2.1032 1.2496 14 6 2.6092 1.8344 2.3205 15 6 2.1050 2.4223 3.6133 16 6 1.3133 1.6637 4.4554 17 6 0.8513 2.2027 5.6413 18 6 1.1815 3.5004 5.9858 19 6 1.9730 4.2587 5.1439 20 6 2.3324 5.6734 5.5191 21 7 3.5820 5.6727 6.2915 22 6 3.3991 5.0061 7.5884 23 6 4.7389 4.9561 8.3266 24 7 5.2470 6.3232 8.5073 25 6 6.4965 6.3225 9.2797 26 6 5.4299 6.9897 7.2104 27 6 4.0901 7.0398 6.4722 28 6 2.4388 3.7180 3.9598 29 1 -0.3633 0.5973 0.8363 30 1 -0.3633 0.4255 -0.9354 31 1 -0.3633 -1.0229 0.0992 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.1875 0.5254 -1.9167 35 1 1.5198 3.0955 1.1116 36 1 2.7344 0.7577 2.4355 37 1 3.5676 2.2864 2.0652 38 1 1.0564 0.6496 4.1870 39 1 0.2332 1.6100 6.2993 40 1 0.8202 3.9217 6.9122 41 1 2.4648 6.2667 4.6144 42 1 1.5328 6.1036 6.1221 43 1 2.6760 5.5627 8.1846 44 1 3.0344 3.9917 7.4276 45 1 5.4542 4.3765 7.7431 46 1 4.5999 4.4880 9.3011 47 1 6.8149 7.3499 9.4565 48 1 6.3332 5.8233 10.2347 49 1 7.2688 5.7939 8.7209 50 1 6.1530 6.4331 6.6143 51 1 5.7948 8.0042 7.3709 52 1 4.2291 7.5078 5.4977 53 1 3.3748 7.6194 7.0557 54 1 3.0612 4.3090 3.3043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154857.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:17 Heat of formation + Delta-G solvation = 10.881944 kcal Electronic energy + Delta-G solvation = -28494.442738 eV Core-core repulsion = 24850.583121 eV Total energy + Delta-G solvation = -3643.859617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.86115 -39.85105 -38.32304 -36.62136 -34.97652 -33.11964 -32.57652 -31.94374 -31.38215 -29.40460 -28.00427 -26.32180 -25.80620 -25.23074 -24.60622 -24.09061 -22.70728 -21.52322 -21.05244 -20.75518 -18.98064 -17.41753 -17.26352 -16.79313 -16.33241 -16.17182 -16.08875 -15.97081 -15.80554 -15.64491 -15.43921 -15.28546 -15.09206 -14.94751 -14.31378 -13.93623 -13.80980 -13.71355 -13.52266 -13.34972 -13.24545 -13.05568 -12.95926 -12.86927 -12.61921 -12.52978 -12.28151 -12.15554 -12.00389 -11.95841 -11.93203 -11.81025 -11.70335 -11.58069 -11.49281 -10.59826 -10.42467 -9.70805 -9.63604 -9.44389 -9.23404 -9.13806 -8.56816 -6.27771 0.43132 0.51860 1.54294 1.61241 1.80111 2.57633 2.68420 2.94298 3.13683 3.22250 3.60377 3.78043 3.86775 3.91624 4.01386 4.06740 4.15081 4.23530 4.26431 4.37023 4.37880 4.40577 4.42231 4.53427 4.55656 4.59428 4.60058 4.62757 4.66166 4.71005 4.76508 4.80214 4.81463 4.87485 4.97214 4.98471 5.03200 5.03980 5.14318 5.17795 5.21130 5.39085 5.51660 5.58199 5.65894 5.69527 5.78149 5.89291 5.90044 5.94095 6.08247 6.10876 6.12928 6.16602 6.47858 6.59759 6.79500 7.50537 8.79860 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.002265 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.110396 B =12358.831311 C =13118.111801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.207 3.793 4 H -0.042 1.042 5 C -0.596 4.596 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.934 5.934 9 Si 1.108 2.892 10 H -0.287 1.287 11 H -0.272 1.272 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.101 3.899 15 C -0.081 4.081 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.080 4.080 20 C 0.102 3.898 21 N -0.549 5.549 22 C 0.058 3.942 23 C 0.058 3.942 24 N -0.554 5.554 25 C 0.025 3.975 26 C 0.058 3.942 27 C 0.058 3.942 28 C -0.105 4.105 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.035 0.965 34 H 0.257 0.743 35 H 0.332 0.668 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.022 0.978 50 H 0.029 0.971 51 H 0.094 0.906 52 H 0.085 0.915 53 H 0.045 0.955 54 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 10.714 25.651 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.099 3.901 4 H -0.025 1.025 5 C -0.634 4.634 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.572 5.572 9 Si 0.931 3.069 10 H -0.213 1.213 11 H -0.197 1.197 12 H -0.198 1.198 13 N -0.295 5.295 14 C -0.028 4.028 15 C -0.082 4.082 16 C -0.130 4.130 17 C -0.136 4.136 18 C -0.134 4.134 19 C -0.080 4.080 20 C -0.025 4.025 21 N -0.274 5.274 22 C -0.070 4.070 23 C -0.070 4.070 24 N -0.279 5.279 25 C -0.123 4.123 26 C -0.070 4.070 27 C -0.070 4.070 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.137 0.863 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.040 0.960 50 H 0.048 0.952 51 H 0.112 0.888 52 H 0.104 0.896 53 H 0.063 0.937 54 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.177 10.187 24.196 26.279 hybrid contribution 1.371 0.188 0.879 1.639 sum 2.548 10.375 25.075 27.256 Atomic orbital electron populations 1.21297 0.95047 0.99001 1.01123 1.21367 0.97508 0.97268 0.97686 1.19092 0.90920 0.92674 0.87461 1.02462 1.22190 1.30369 1.18125 0.92751 0.93257 1.27008 0.96368 0.95816 1.03090 1.70903 1.22615 1.28639 1.35030 0.83039 0.75523 0.75571 0.72774 1.21320 1.19747 1.19821 1.60563 1.46858 1.15702 1.06381 1.20824 0.92594 0.99679 0.89691 1.19768 0.98571 0.94731 0.95118 1.21126 0.97149 1.00122 0.94591 1.21337 0.99918 0.95908 0.96463 1.21224 0.98279 0.94240 0.99661 1.19740 0.97735 0.96266 0.94289 1.20951 0.90556 0.92681 0.98326 1.62127 1.28945 1.18278 1.18022 1.22207 0.96576 0.99790 0.88450 1.22166 0.95599 0.89223 1.00006 1.62236 1.30060 1.17622 1.17936 1.22394 0.89203 1.02763 0.97944 1.22181 0.96245 0.99795 0.88813 1.22188 0.95899 0.88658 1.00251 1.20888 0.99837 0.94471 0.97186 0.92506 0.94691 0.93975 0.95002 0.94678 0.93226 0.85097 0.91573 0.96615 0.86293 0.83737 0.84239 0.89941 0.92678 0.93779 0.90066 0.95505 0.89071 0.90335 0.90498 0.95966 0.95238 0.88794 0.89626 0.93712 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.43 71.98 0.68 -4.04 16 2 C -0.10 -4.78 5.51 30.59 0.17 -4.61 16 3 C 0.21 10.48 1.93 44.17 0.09 10.57 16 4 H -0.04 -2.37 7.22 -2.39 -0.02 -2.39 16 5 C -0.60 -32.73 7.13 25.60 0.18 -32.55 16 6 H 0.05 2.70 7.67 -2.91 -0.02 2.68 16 7 C -0.02 -1.35 5.26 84.65 0.45 -0.90 16 8 N -0.93 -56.48 12.94 21.45 0.28 -56.20 16 9 Si 1.11 50.12 29.91 68.60 2.05 52.17 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.67 -28.44 5.60 -499.48 -2.80 -31.24 16 14 C 0.10 3.76 5.58 85.56 0.48 4.24 16 15 C -0.08 -2.55 5.44 -19.87 -0.11 -2.66 16 16 C -0.11 -3.08 9.70 22.27 0.22 -2.87 16 17 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 18 C -0.12 -2.38 7.92 22.27 0.18 -2.20 16 19 C -0.08 -1.86 4.89 -19.86 -0.10 -1.96 16 20 C 0.10 1.97 5.12 85.56 0.44 2.41 16 21 N -0.55 -10.63 4.70 -900.26 -4.23 -14.86 16 22 C 0.06 1.01 5.25 86.31 0.45 1.46 16 23 C 0.06 0.97 5.62 86.31 0.49 1.46 16 24 N -0.55 -8.83 4.97 -921.93 -4.58 -13.41 16 25 C 0.02 0.30 9.60 127.69 1.23 1.53 16 26 C 0.06 0.91 5.62 86.31 0.49 1.39 16 27 C 0.06 0.95 5.61 86.31 0.48 1.43 16 28 C -0.10 -3.00 9.36 22.27 0.21 -2.79 16 29 H 0.06 2.42 7.59 -2.38 -0.02 2.40 16 30 H 0.03 1.66 7.31 -2.39 -0.02 1.64 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.68 6.35 -2.38 -0.02 1.66 16 33 H 0.03 1.54 7.33 -2.39 -0.02 1.52 16 34 H 0.26 15.82 6.03 -92.71 -0.56 15.27 16 35 H 0.33 14.39 8.29 -89.69 -0.74 13.65 16 36 H 0.07 2.48 7.24 -2.39 -0.02 2.46 16 37 H 0.02 0.61 8.08 -2.39 -0.02 0.59 16 38 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.14 2.14 7.99 -2.91 -0.02 2.12 16 41 H 0.08 1.61 7.97 -2.39 -0.02 1.59 16 42 H 0.06 0.93 8.06 -2.39 -0.02 0.91 16 43 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.08 1.49 5.95 -2.39 -0.01 1.47 16 45 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 47 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 49 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16 51 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.09 1.30 8.07 -2.39 -0.02 1.28 16 53 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.11 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -63.53 415.19 -2.74 -66.27 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.31 Total: 29.75 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 6.23 Total: -32.48 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -11.33 Total: -115.71 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -63.53 -2.74 -66.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154857.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.151 kcal (2) G-P(sol) polarization free energy of solvation -63.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds