Wall clock time and date at job start Tue Mar 31 2020 16:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99652 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99840 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21653 * 120.00225 * 359.72103 * 14 13 12 16 16 C 1.47088 * 119.99652 * 179.72418 * 14 13 12 17 17 C 1.44477 * 123.48270 * 359.72736 * 16 14 13 18 18 C 1.32719 * 113.09084 * 179.80819 * 17 16 14 19 19 S 1.75489 * 110.61649 * 0.44148 * 18 17 16 20 20 C 1.36171 * 123.48334 * 180.02562 * 16 14 13 21 21 Br 1.89100 * 124.59971 * 0.02562 * 20 16 14 22 22 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 23 23 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 24 24 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 25 25 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 26 26 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 27 27 H 1.08000 * 123.45739 * 359.97438 * 17 16 14 28 28 H 1.08008 * 124.68854 * 180.18009 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5506 -7.4695 -0.0035 16 6 2.7025 -8.3651 -0.0092 17 6 4.1364 -8.1878 -0.0153 18 6 4.8028 -9.3355 -0.0156 19 16 3.6926 -10.6946 -0.0210 20 6 2.3275 -9.6741 -0.0150 21 35 0.5355 -10.2777 -0.0177 22 1 -0.4850 0.8400 -0.0004 23 1 0.3535 -2.3907 -0.0002 24 1 0.6169 -4.9209 -0.8887 25 1 0.6175 -4.9205 0.8913 26 1 3.1496 -5.7992 0.0012 27 1 4.6167 -7.2205 -0.0166 28 1 5.8795 -9.4212 -0.0170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271770881.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:33 Heat of formation + Delta-G solvation = -34.549464 kcal Electronic energy + Delta-G solvation = -17260.263559 eV Core-core repulsion = 14063.442089 eV Total energy + Delta-G solvation = -3196.821470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.87012 -38.27245 -36.92359 -34.50843 -33.71675 -32.03233 -31.40353 -29.19213 -27.85027 -25.07807 -23.77180 -21.65534 -19.68932 -19.29337 -18.22808 -18.06939 -16.88387 -15.89402 -15.36841 -15.21661 -14.77101 -14.28892 -14.17925 -13.89247 -13.48264 -13.18817 -13.15038 -12.93136 -12.21599 -11.92277 -11.64819 -11.36144 -11.13912 -11.09135 -10.69631 -10.47187 -10.32899 -9.65407 -9.40941 -9.07217 -8.89588 -8.65960 -8.65389 -8.12035 -6.53038 -3.95145 0.33003 0.79206 1.42113 1.65657 1.76763 3.10501 3.20901 3.25335 3.36211 3.39328 3.72337 4.10113 4.52441 4.83580 4.86968 5.02942 5.15508 5.45959 5.66268 5.84475 5.91876 5.94390 6.04890 6.62203 7.44457 7.74834 7.90026 8.36592 8.43744 9.02751 9.37296 9.84921 10.63750 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002758 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.741632 B =10148.556361 C =11113.132964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.698 5.698 14 C 0.565 3.435 15 O -0.523 6.523 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.221 4.221 19 S 0.223 5.777 20 C -0.184 4.184 21 Br 0.041 6.959 22 H 0.274 0.726 23 H 0.396 0.604 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.410 0.590 27 H 0.161 0.839 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -22.453 -0.049 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.017 4.017 13 N -0.352 5.352 14 C 0.349 3.651 15 O -0.400 6.400 16 C -0.139 4.139 17 C -0.134 4.134 18 C -0.357 4.357 19 S 0.487 5.513 20 C -0.384 4.384 21 Br 0.125 6.875 22 H 0.084 0.916 23 H 0.230 0.770 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.249 0.751 27 H 0.178 0.822 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.034 -24.189 -0.048 24.523 hybrid contribution 0.431 2.749 -0.006 2.783 sum 4.465 -21.439 -0.054 21.900 Atomic orbital electron populations 1.69613 1.06018 1.28561 1.49185 1.25339 0.95678 0.99972 0.96760 0.85804 0.79216 0.80456 0.78493 1.20256 1.20786 1.19318 1.19728 0.93461 0.81974 1.48319 0.87656 1.41795 1.09513 1.04471 1.62491 1.19719 0.88280 0.84973 0.85679 1.90488 1.13711 1.86828 1.57497 1.20978 0.91775 0.85516 1.03477 1.45540 1.11661 1.04276 1.73716 1.17408 0.87687 0.82261 0.77790 1.90879 1.15240 1.84365 1.49547 1.20310 0.94067 0.92610 1.06946 1.21341 0.90926 1.00120 1.01012 1.25637 1.04225 0.95768 1.10047 1.83062 0.91057 1.07694 1.69488 1.26112 0.99681 0.99500 1.13086 1.96782 1.07186 1.86371 1.97120 0.91563 0.76997 0.89603 0.89597 0.75143 0.82186 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.05 55.50 0.72 -23.02 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 15 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.31 -8.23 9.68 -14.93 -0.14 -8.38 15 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 15 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 15 10 C 0.43 9.70 7.85 -10.98 -0.09 9.61 15 11 O -0.60 -15.05 15.24 5.55 0.08 -14.97 15 12 C 0.11 2.02 6.15 -5.19 -0.03 1.99 15 13 N -0.70 -11.72 5.51 -62.67 -0.35 -12.06 15 14 C 0.56 9.31 7.79 -12.67 -0.10 9.21 15 15 O -0.52 -9.75 14.53 5.23 0.08 -9.67 15 16 C -0.12 -1.62 5.98 -104.60 -0.63 -2.24 15 17 C -0.10 -1.12 9.90 -39.01 -0.39 -1.51 15 18 C -0.22 -1.85 11.11 28.85 0.32 -1.53 15 19 S 0.22 1.96 23.01 -107.50 -2.47 -0.52 15 20 C -0.18 -2.30 6.76 29.99 0.20 -2.10 15 21 Br 0.04 0.53 31.65 -68.01 -2.15 -1.62 15 22 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 23 H 0.40 9.38 7.90 -40.82 -0.32 9.06 15 24 H 0.09 1.51 8.14 -51.92 -0.42 1.08 15 25 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 26 H 0.41 6.64 5.98 -40.82 -0.24 6.39 15 27 H 0.16 1.55 7.10 -52.49 -0.37 1.18 15 28 H 0.18 0.94 8.06 -52.48 -0.42 0.52 15 LS Contribution 290.67 15.07 4.38 4.38 Total: -1.00 -30.82 290.67 -7.45 -38.27 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -1.72 Total: 11.76 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.95 Total: 5.62 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.32 Total: -48.62 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.16 Total: -24.64 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.52 kcal Atomic # 35 Polarization: 0.53 SS G_CDS: -2.15 Total: -1.62 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.82 -7.45 -38.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271770881.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.717 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds