Wall clock time and date at job start Tue Mar 31 2020 16:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99652 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99840 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21653 * 120.00225 * 359.72103 * 14 13 12 16 16 C 1.47088 * 119.99652 * 179.72418 * 14 13 12 17 17 C 1.44477 * 123.48270 * 359.72736 * 16 14 13 18 18 C 1.32719 * 113.09084 * 179.80819 * 17 16 14 19 19 S 1.75489 * 110.61649 * 0.44148 * 18 17 16 20 20 C 1.36171 * 123.48334 * 180.02562 * 16 14 13 21 21 Br 1.89100 * 124.59971 * 0.02562 * 20 16 14 22 22 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 23 23 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 24 24 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 25 25 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 26 26 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 27 27 H 1.08000 * 123.45739 * 359.97438 * 17 16 14 28 28 H 1.08008 * 124.68854 * 180.18009 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5506 -7.4695 -0.0035 16 6 2.7025 -8.3651 -0.0092 17 6 4.1364 -8.1878 -0.0153 18 6 4.8028 -9.3355 -0.0156 19 16 3.6926 -10.6946 -0.0210 20 6 2.3275 -9.6741 -0.0150 21 35 0.5355 -10.2777 -0.0177 22 1 -0.4850 0.8400 -0.0004 23 1 0.3535 -2.3907 -0.0002 24 1 0.6169 -4.9209 -0.8887 25 1 0.6175 -4.9205 0.8913 26 1 3.1496 -5.7992 0.0012 27 1 4.6167 -7.2205 -0.0166 28 1 5.8795 -9.4212 -0.0170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271770881.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:32 Heat of formation + Delta-G solvation = -56.499039 kcal Electronic energy + Delta-G solvation = -17261.215364 eV Core-core repulsion = 14063.442089 eV Total energy + Delta-G solvation = -3197.773275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17705 -40.00971 -37.92326 -36.26674 -35.33960 -33.37956 -32.93699 -30.28679 -29.19941 -26.76961 -25.02388 -22.66932 -21.38313 -20.57320 -20.03532 -19.07132 -18.07154 -17.46769 -16.79151 -16.70176 -16.43472 -15.87498 -15.62985 -15.21491 -14.70196 -14.35632 -14.07583 -13.99302 -13.76026 -13.53805 -13.49192 -12.90284 -12.45569 -12.15625 -12.12194 -11.98759 -11.73381 -11.56961 -10.56939 -10.56797 -10.27661 -10.09509 -9.85166 -9.51676 -8.51001 -6.01259 -0.58153 -0.03266 0.55403 0.87931 0.88975 1.36707 1.43258 1.55929 1.89648 2.04073 2.19477 2.32652 3.11557 3.16206 3.63961 3.95929 4.08452 4.25059 4.42350 4.44264 4.68226 4.93777 5.06951 5.22543 5.38458 5.91469 6.42866 6.49592 7.03021 7.08297 7.43805 7.93600 8.65820 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002758 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.741632 B =10148.556361 C =11113.132964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.123 3.877 13 N -0.699 5.699 14 C 0.563 3.437 15 O -0.551 6.551 16 C -0.144 4.144 17 C -0.122 4.122 18 C -0.203 4.203 19 S 0.292 5.708 20 C -0.208 4.208 21 Br 0.026 6.974 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.413 0.587 27 H 0.166 0.834 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 -23.389 -0.067 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.511 6.511 12 C -0.005 4.005 13 N -0.353 5.353 14 C 0.349 3.651 15 O -0.430 6.430 16 C -0.165 4.165 17 C -0.151 4.151 18 C -0.339 4.339 19 S 0.557 5.443 20 C -0.408 4.408 21 Br 0.110 6.890 22 H 0.089 0.911 23 H 0.233 0.767 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.252 0.748 27 H 0.183 0.817 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.536 -25.153 -0.068 25.755 hybrid contribution 0.031 2.882 -0.001 2.882 sum 5.567 -22.271 -0.069 22.956 Atomic orbital electron populations 1.69682 1.07031 1.29635 1.49253 1.26154 0.96554 1.02757 0.95797 0.84852 0.77908 0.76416 0.78707 1.19553 1.19714 1.19382 1.19744 0.92994 0.83480 1.50371 0.89458 1.41848 1.09611 1.04626 1.63376 1.20367 0.88122 0.85838 0.83607 1.90464 1.15071 1.87516 1.58038 1.20791 0.91598 0.83709 1.04394 1.45526 1.11461 1.04162 1.74155 1.17854 0.87956 0.82538 0.76710 1.90854 1.16570 1.84740 1.50864 1.20232 0.94928 0.91845 1.09534 1.21353 0.89624 1.01400 1.02717 1.26113 1.05972 0.94806 1.07054 1.82870 0.88518 1.06067 1.66880 1.26427 1.00509 1.00310 1.13602 1.96755 1.08782 1.86233 1.97184 0.91085 0.76709 0.88637 0.88634 0.74783 0.81692 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 13.05 21.66 0.28 -48.32 15 2 C -0.01 -0.62 5.50 84.93 0.47 -0.16 15 3 Si 1.00 41.53 29.55 68.60 2.03 43.56 15 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 15 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 7 C -0.34 -18.44 9.68 84.04 0.81 -17.62 15 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 15 9 N -0.56 -27.99 5.29 -306.98 -1.62 -29.62 15 10 C 0.43 19.89 7.85 87.66 0.69 20.57 15 11 O -0.62 -31.70 15.24 -3.07 -0.05 -31.75 15 12 C 0.12 4.51 6.15 85.63 0.53 5.04 15 13 N -0.70 -23.44 5.51 -470.41 -2.59 -26.03 15 14 C 0.56 18.55 7.79 86.57 0.67 19.23 15 15 O -0.55 -20.69 14.53 -4.20 -0.06 -20.75 15 16 C -0.14 -3.79 5.98 -19.85 -0.12 -3.91 15 17 C -0.12 -2.40 9.90 22.69 0.22 -2.18 15 18 C -0.20 -2.70 11.11 66.65 0.74 -1.96 15 19 S 0.29 4.25 23.01 -56.49 -1.30 2.95 15 20 C -0.21 -4.95 6.76 67.34 0.46 -4.50 15 21 Br 0.03 0.66 31.65 -20.37 -0.64 0.02 15 22 H 0.28 13.89 8.31 -92.71 -0.77 13.12 15 23 H 0.40 19.23 7.90 -92.71 -0.73 18.50 15 24 H 0.10 3.35 8.14 -2.38 -0.02 3.33 15 25 H 0.10 3.35 8.14 -2.39 -0.02 3.33 15 26 H 0.41 13.36 5.98 -92.71 -0.55 12.81 15 27 H 0.17 2.98 7.10 -2.91 -0.02 2.96 15 28 H 0.21 1.21 8.06 -2.91 -0.02 1.18 15 Total: -1.00 -66.44 290.67 0.48 -65.97 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.04 Total: 29.46 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 4.47 Total: 14.51 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.93 Total: -103.97 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.11 Total: -52.50 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.95 kcal Atomic # 35 Polarization: 0.66 SS G_CDS: -0.64 Total: 0.02 kcal Total: -66.44 0.48 -65.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271770881.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.468 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds