Wall clock time and date at job start Tue Mar 31 2020 16:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29364 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48506 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47428 * 300.00241 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00113 * 3 2 1 7 7 C 1.46629 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99925 * 179.97438 * 7 2 1 9 9 O 1.22309 * 119.99654 * 0.27515 * 7 2 1 10 10 C 1.35722 * 116.99815 * 179.72225 * 9 7 2 11 11 C 1.38916 * 120.06141 * 269.72322 * 10 9 7 12 12 N 1.48011 * 120.03317 * 0.02562 * 11 10 9 13 13 O 1.26747 * 120.00234 * 179.97438 * 12 11 10 14 14 O 1.26750 * 120.00365 * 0.02562 * 12 11 10 15 15 C 1.38082 * 119.93465 * 179.72593 * 11 10 9 16 16 C 1.38401 * 120.05620 * 0.57454 * 15 11 10 17 17 Br 1.89112 * 119.93209 * 179.72299 * 16 15 11 18 18 C 1.38395 * 120.12729 * 359.70174 * 16 15 11 19 19 C 1.38068 * 120.06281 * 359.97438 * 18 16 15 20 20 N 1.48023 * 120.03012 * 180.02562 * 19 18 16 21 21 O 1.26751 * 119.99841 * 359.97438 * 20 19 18 22 22 O 1.26749 * 120.00038 * 179.97438 * 20 19 18 23 23 H 0.97005 * 120.00130 * 359.97438 * 1 2 3 24 24 H 1.07995 * 119.96593 * 180.29502 * 15 11 10 25 25 H 1.08011 * 119.96799 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2276 1.6178 0.0000 4 1 3.6877 1.3465 -0.0006 5 1 1.8688 2.3966 -1.2124 6 1 1.8688 2.3964 1.2125 7 6 2.0269 -1.2698 -0.0006 8 1 3.1069 -1.2697 -0.0010 9 8 1.4154 -2.3290 -0.0061 10 6 2.1546 -3.4672 -0.0122 11 6 2.5287 -4.0476 -1.2175 12 7 2.1220 -3.4251 -2.4973 13 8 2.4641 -3.9548 -3.5967 14 8 1.4324 -2.3616 -2.4938 15 6 3.2856 -5.2025 -1.2206 16 6 3.6614 -5.7882 -0.0243 17 35 4.6914 -7.3742 -0.0327 18 6 3.2852 -5.2152 1.1780 19 6 2.5340 -4.0568 1.1871 20 7 2.1325 -3.4443 2.4734 21 8 2.4780 -3.9836 3.5672 22 8 1.4434 -2.3806 2.4811 23 1 -0.4850 0.8401 0.0004 24 1 3.5808 -5.6515 -2.1574 25 1 3.5802 -5.6743 2.1101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307369242.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:50 Heat of formation + Delta-G solvation = 32.687926 kcal Electronic energy + Delta-G solvation = -20764.195354 eV Core-core repulsion = 16991.703551 eV Total energy + Delta-G solvation = -3772.491803 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 331.957 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.19706 -41.47043 -39.85546 -38.55934 -37.00497 -36.45879 -34.58726 -33.16349 -32.52053 -30.57557 -28.99710 -27.38135 -26.55174 -23.78621 -22.85080 -22.42091 -20.77094 -19.65709 -19.35713 -18.34485 -18.19981 -17.74773 -17.57018 -17.38898 -17.31678 -16.07275 -15.95554 -15.14861 -14.65357 -14.27180 -13.90105 -13.59234 -13.30977 -13.00282 -12.58045 -12.26453 -12.12897 -12.06999 -11.82035 -11.75200 -11.26194 -10.94551 -10.91429 -10.73420 -10.67178 -10.49724 -9.79820 -6.27531 -1.48472 -1.32446 -0.05868 0.17641 0.60196 0.76346 0.79024 0.83889 1.33215 1.57963 1.73219 1.87026 2.10294 2.27939 2.40254 3.31714 3.91427 4.01049 4.15489 4.21318 4.33984 4.64506 4.92452 5.03362 5.20488 5.48786 5.89089 6.24141 6.27261 6.95513 8.07133 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.005274 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.434014 B = 5307.482003 C = 6485.856850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.086 4.086 3 Si 1.042 2.958 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.200 1.200 7 C 0.331 3.669 8 H 0.190 0.810 9 O -0.003 6.003 10 C -0.329 4.329 11 C -0.051 4.051 12 N 0.025 4.975 13 O -0.554 6.554 14 O -0.528 6.528 15 C 0.043 3.957 16 C -0.149 4.149 17 Br -0.024 7.024 18 C -0.077 4.077 19 C 0.076 3.924 20 N 0.020 4.980 21 O -0.179 6.179 22 O -0.238 6.238 23 H 0.381 0.619 24 H 0.129 0.871 25 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 7.066 10.470 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.322 4.322 3 Si 0.844 3.156 4 H -0.135 1.135 5 H -0.154 1.154 6 H -0.121 1.121 7 C 0.217 3.783 8 H 0.206 0.794 9 O 0.137 5.863 10 C -0.381 4.381 11 C -0.178 4.178 12 N 0.369 4.631 13 O -0.650 6.650 14 O -0.628 6.628 15 C 0.022 3.978 16 C -0.236 4.236 17 Br 0.061 6.939 18 C -0.101 4.101 19 C -0.012 4.012 20 N 0.502 4.498 21 O -0.381 6.381 22 O -0.424 6.424 23 H 0.202 0.798 24 H 0.147 0.853 25 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.736 6.159 9.494 12.687 hybrid contribution -0.817 0.594 -0.600 1.175 sum 4.919 6.754 8.894 12.203 Atomic orbital electron populations 1.68682 1.10789 1.41089 0.96000 1.31366 0.98923 1.02814 0.99113 0.84480 0.80190 0.67184 0.83729 1.13545 1.15375 1.12108 1.29893 1.01963 0.88957 0.57509 0.79365 1.81690 1.40890 1.14662 1.49093 1.15615 1.38740 0.93324 0.90461 1.18522 1.16248 1.02776 0.80278 1.44902 1.11874 1.05721 1.00622 1.94991 1.76461 1.72908 1.20688 1.94862 1.52281 1.20213 1.95462 1.20493 0.89514 0.89908 0.97927 1.20404 1.11235 0.99064 0.92854 1.96531 1.68966 1.29196 1.99234 1.20111 0.98087 0.93135 0.98783 1.19527 1.05805 0.98792 0.77087 1.47098 0.98244 1.00779 1.03715 1.95366 1.58858 1.64556 1.19276 1.95352 1.38675 1.12880 1.95541 0.79756 0.85329 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -14.39 13.66 23.22 0.32 -14.08 15 2 C -0.09 -2.13 5.69 87.25 0.50 -1.63 15 3 Si 1.04 12.53 29.64 68.60 2.03 14.56 15 4 H -0.21 -2.32 7.11 99.48 0.71 -1.61 15 5 H -0.23 -2.90 7.11 99.48 0.71 -2.19 15 6 H -0.20 -1.57 7.11 99.48 0.71 -0.87 15 7 C 0.33 11.14 7.11 70.01 0.50 11.64 15 8 H 0.19 4.95 7.73 -2.91 -0.02 4.93 15 9 O 0.00 -0.13 6.36 81.95 0.52 0.40 15 10 C -0.33 -15.69 5.35 22.59 0.12 -15.57 15 11 C -0.05 -2.78 6.89 36.50 0.25 -2.53 15 12 N 0.03 1.65 4.71 -46.17 -0.22 1.44 15 13 O -0.55 -39.05 18.80 11.74 0.22 -38.83 15 14 O -0.53 -34.26 16.65 18.71 0.31 -33.95 15 15 C 0.04 2.06 9.30 22.27 0.21 2.26 15 16 C -0.15 -5.86 6.23 22.35 0.14 -5.72 15 17 Br -0.02 -0.73 33.70 -20.37 -0.69 -1.42 15 18 C -0.08 -2.94 9.30 22.27 0.21 -2.73 15 19 C 0.08 3.21 6.89 36.50 0.25 3.46 15 20 N 0.02 0.80 4.71 -46.17 -0.22 0.58 15 21 O -0.18 -6.82 18.80 11.73 0.22 -6.60 15 22 O -0.24 -9.49 16.63 18.71 0.31 -9.18 15 23 H 0.38 6.48 8.26 -92.70 -0.77 5.71 15 24 H 0.13 6.24 7.59 -2.91 -0.02 6.21 15 25 H 0.17 5.41 7.59 -2.91 -0.02 5.39 15 Total: -1.00 -86.61 272.91 6.27 -80.33 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.29 Total: 17.57 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 2.17 Total: -10.82 kcal Atomic # 7 Polarization: -11.94 SS G_CDS: -0.12 Total: -12.06 kcal Atomic # 8 Polarization: -89.75 SS G_CDS: 1.59 Total: -88.17 kcal Atomic # 14 Polarization: 12.53 SS G_CDS: 2.03 Total: 14.56 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -0.69 Total: -1.42 kcal Total: -86.61 6.27 -80.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307369242.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.019 kcal (2) G-P(sol) polarization free energy of solvation -86.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds