Wall clock time and date at job start Tue Mar 31 2020 16:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47021 * 300.00015 * 3 2 1 6 6 H 1.48500 * 109.47125 * 59.99893 * 3 2 1 7 7 C 1.38987 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 179.97438 * 7 2 1 9 9 N 1.37314 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.36491 * 126.06993 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50845 * 180.02562 * 10 9 7 12 12 N 1.40526 * 126.09068 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00355 * 179.97438 * 12 11 10 14 14 O 1.21673 * 119.99543 * 0.02562 * 13 12 11 15 15 C 1.46954 * 120.00167 * 179.97438 * 13 12 11 16 16 S 1.77062 * 127.98513 * 359.68697 * 15 13 12 17 17 N 1.56290 * 96.44168 * 179.87830 * 16 15 13 18 18 C 1.29576 * 110.43488 * 0.39570 * 17 16 15 19 19 Cl 1.73602 * 121.05879 * 179.71899 * 18 17 16 20 20 C 1.37834 * 117.89172 * 359.69020 * 18 17 16 21 21 Cl 1.73598 * 124.39965 * 180.02562 * 20 18 17 22 22 C 1.40675 * 107.82766 * 359.97438 * 11 10 9 23 23 N 1.30901 * 108.38740 * 0.02562 * 22 11 10 24 24 H 0.96993 * 120.00537 * 0.02562 * 1 2 3 25 25 H 1.07995 * 126.25012 * 0.03490 * 10 9 7 26 26 H 0.96997 * 119.99698 * 0.02562 * 12 11 10 27 27 H 1.07999 * 125.80238 * 179.73358 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 -0.0006 5 1 1.8881 2.3965 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0080 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3215 -2.3928 -0.0016 10 6 1.8752 -3.6404 -0.0017 11 6 0.8580 -4.5385 -0.0035 12 7 0.9891 -5.9377 -0.0037 13 6 -0.1101 -6.7176 -0.0050 14 8 -1.2160 -6.2101 -0.0065 15 6 0.0270 -8.1807 -0.0058 16 16 1.5181 -9.1354 -0.0129 17 7 0.8284 -10.5379 -0.0065 18 6 -0.4608 -10.4080 -0.0076 19 17 -1.5010 -11.7979 -0.0088 20 6 -0.9803 -9.1313 -0.0073 21 17 -2.6766 -8.7626 -0.0080 22 6 -0.3512 -3.8197 -0.0039 23 7 -0.0715 -2.5410 -0.0030 24 1 -0.4850 0.8399 -0.0004 25 1 2.9303 -3.8707 -0.0005 26 1 1.8707 -6.3421 -0.0022 27 1 -1.3419 -4.2498 -0.0092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361923312.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:49 Heat of formation + Delta-G solvation = 92.199384 kcal Electronic energy + Delta-G solvation = -20059.042653 eV Core-core repulsion = 16419.313933 eV Total energy + Delta-G solvation = -3639.728720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 331.964 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26490 -39.76559 -38.54657 -36.90308 -36.70319 -34.42720 -33.31701 -31.86088 -30.33212 -28.16802 -26.35487 -24.86211 -22.66395 -21.12328 -20.27634 -19.73805 -18.99593 -17.66670 -17.35807 -15.96468 -15.84577 -15.51041 -15.39316 -14.58793 -14.55600 -14.30788 -13.71060 -13.27124 -13.00559 -12.50274 -12.30498 -12.10054 -11.76554 -11.67409 -11.57849 -11.47259 -11.34048 -11.03032 -10.88136 -10.55785 -10.38730 -9.81422 -9.56607 -9.28162 -9.02852 -8.92119 -8.16728 -6.84505 -6.64211 -4.31528 -0.25854 0.44241 0.61828 1.39111 1.92471 2.19916 2.83171 3.00178 3.04918 3.07121 3.20124 3.60956 3.78034 4.10799 4.31133 4.56551 4.63764 4.94356 5.02638 5.52455 6.13770 6.30272 6.70952 6.84061 6.91673 7.11985 7.75623 7.92324 8.13346 8.41585 8.63960 9.26800 9.55693 10.31497 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.034622 B = 0.002646 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.549640 B =10577.642249 C =11376.347017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.119 0.881 9 N -0.138 5.138 10 C -0.080 4.080 11 C -0.065 4.065 12 N -0.606 5.606 13 C 0.570 3.430 14 O -0.496 6.496 15 C -0.236 4.236 16 S 0.509 5.491 17 N -0.518 5.518 18 C 0.146 3.854 19 Cl 0.012 6.988 20 C -0.044 4.044 21 Cl 0.030 6.970 22 C -0.025 4.025 23 N -0.260 5.260 24 H 0.276 0.724 25 H 0.148 0.852 26 H 0.395 0.605 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -17.394 -0.031 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.453 4.453 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.232 4.232 11 C -0.170 4.170 12 N -0.248 5.248 13 C 0.353 3.647 14 O -0.372 6.372 15 C -0.371 4.371 16 S 0.660 5.340 17 N -0.351 5.351 18 C -0.054 4.054 19 Cl 0.039 6.961 20 C -0.089 4.089 21 Cl 0.059 6.941 22 C -0.201 4.201 23 N -0.090 5.090 24 H 0.087 0.913 25 H 0.166 0.834 26 H 0.228 0.772 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.384 -16.388 -0.037 16.734 hybrid contribution -0.786 -0.515 0.009 0.939 sum 2.598 -16.903 -0.028 17.101 Atomic orbital electron populations 1.70212 1.06180 1.28117 1.34716 1.25667 0.95725 1.00385 0.95385 0.85745 0.79645 0.80109 0.78558 1.18613 1.19852 1.19845 1.19972 0.91776 0.80454 1.53142 0.86373 1.44600 1.04115 1.03362 1.38429 1.21242 0.96858 0.85249 1.19832 1.17160 0.94626 0.80200 1.25041 1.42226 1.07243 1.05066 1.70277 1.16215 0.85376 0.82267 0.80799 1.90793 1.24997 1.72359 1.49006 1.26866 0.99561 1.00075 1.10570 1.81791 1.08067 0.86628 1.57503 1.71598 1.11094 1.27795 1.24629 1.20961 0.88137 0.89294 1.06960 1.98429 1.62046 1.38975 1.96616 1.20875 0.90635 0.90471 1.06874 1.98436 1.05455 1.94171 1.96067 1.24156 0.97985 0.90718 1.07198 1.78304 0.90045 1.14957 1.25742 0.91346 0.83436 0.77201 0.80525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.72 11.81 55.49 0.66 -20.07 15 2 C 0.05 1.15 5.50 -17.51 -0.10 1.05 15 3 Si 0.94 18.21 29.55 -169.99 -5.02 13.18 15 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 15 7 C -0.32 -8.12 10.25 -14.82 -0.15 -8.27 15 8 H 0.12 2.65 7.83 -52.49 -0.41 2.24 15 9 N -0.14 -3.62 3.74 -11.41 -0.04 -3.66 15 10 C -0.08 -1.77 11.49 -16.39 -0.19 -1.95 15 11 C -0.06 -1.39 6.90 -83.86 -0.58 -1.97 15 12 N -0.61 -9.92 5.46 -11.10 -0.06 -9.98 15 13 C 0.57 9.52 7.77 -12.73 -0.10 9.42 15 14 O -0.50 -10.00 12.81 5.21 0.07 -9.93 15 15 C -0.24 -3.11 6.76 -35.96 -0.24 -3.35 15 16 S 0.51 4.81 22.81 -107.50 -2.45 2.36 15 17 N -0.52 -5.94 11.28 24.49 0.28 -5.66 15 18 C 0.15 1.76 7.16 -18.65 -0.13 1.63 15 19 Cl 0.01 0.13 28.63 -51.86 -1.48 -1.36 15 20 C -0.04 -0.58 6.52 -39.63 -0.26 -0.84 15 21 Cl 0.03 0.41 27.26 -51.86 -1.41 -1.01 15 22 C -0.02 -0.62 10.85 -17.03 -0.18 -0.80 15 23 N -0.26 -7.25 10.40 30.80 0.32 -6.93 15 24 H 0.28 6.81 8.31 -40.82 -0.34 6.47 15 25 H 0.15 2.63 8.06 -52.49 -0.42 2.21 15 26 H 0.39 4.77 8.20 -40.82 -0.33 4.44 15 27 H 0.18 4.36 5.91 -52.49 -0.31 4.05 15 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -31.26 296.57 -7.24 -38.49 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -0.61 Total: 5.19 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.93 Total: -5.09 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 1.15 Total: -46.30 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.18 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -2.45 Total: 2.36 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -2.90 Total: -2.36 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.26 -7.24 -38.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361923312.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.690 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds