Wall clock time and date at job start Tue Mar 31 2020 16:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47021 * 300.00015 * 3 2 1 6 6 H 1.48500 * 109.47125 * 59.99893 * 3 2 1 7 7 C 1.38987 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 179.97438 * 7 2 1 9 9 N 1.37314 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.36491 * 126.06993 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50845 * 180.02562 * 10 9 7 12 12 N 1.40526 * 126.09068 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00355 * 179.97438 * 12 11 10 14 14 O 1.21673 * 119.99543 * 0.02562 * 13 12 11 15 15 C 1.46954 * 120.00167 * 179.97438 * 13 12 11 16 16 S 1.77062 * 127.98513 * 359.68697 * 15 13 12 17 17 N 1.56290 * 96.44168 * 179.87830 * 16 15 13 18 18 C 1.29576 * 110.43488 * 0.39570 * 17 16 15 19 19 Cl 1.73602 * 121.05879 * 179.71899 * 18 17 16 20 20 C 1.37834 * 117.89172 * 359.69020 * 18 17 16 21 21 Cl 1.73598 * 124.39965 * 180.02562 * 20 18 17 22 22 C 1.40675 * 107.82766 * 359.97438 * 11 10 9 23 23 N 1.30901 * 108.38740 * 0.02562 * 22 11 10 24 24 H 0.96993 * 120.00537 * 0.02562 * 1 2 3 25 25 H 1.07995 * 126.25012 * 0.03490 * 10 9 7 26 26 H 0.96997 * 119.99698 * 0.02562 * 12 11 10 27 27 H 1.07999 * 125.80238 * 179.73358 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 -0.0006 5 1 1.8881 2.3965 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0080 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3215 -2.3928 -0.0016 10 6 1.8752 -3.6404 -0.0017 11 6 0.8580 -4.5385 -0.0035 12 7 0.9891 -5.9377 -0.0037 13 6 -0.1101 -6.7176 -0.0050 14 8 -1.2160 -6.2101 -0.0065 15 6 0.0270 -8.1807 -0.0058 16 16 1.5181 -9.1354 -0.0129 17 7 0.8284 -10.5379 -0.0065 18 6 -0.4608 -10.4080 -0.0076 19 17 -1.5010 -11.7979 -0.0088 20 6 -0.9803 -9.1313 -0.0073 21 17 -2.6766 -8.7626 -0.0080 22 6 -0.3512 -3.8197 -0.0039 23 7 -0.0715 -2.5410 -0.0030 24 1 -0.4850 0.8399 -0.0004 25 1 2.9303 -3.8707 -0.0005 26 1 1.8707 -6.3421 -0.0022 27 1 -1.3419 -4.2498 -0.0092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361923312.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:48 Heat of formation + Delta-G solvation = 70.773778 kcal Electronic energy + Delta-G solvation = -20059.971737 eV Core-core repulsion = 16419.313933 eV Total energy + Delta-G solvation = -3640.657804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 331.964 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78144 -40.98510 -39.99702 -37.84183 -37.66419 -36.01176 -35.03636 -32.97091 -32.17023 -29.82307 -27.63928 -26.50887 -23.88279 -22.83958 -21.51444 -21.37815 -20.21577 -19.12260 -18.66218 -17.41363 -16.99491 -16.95484 -16.86747 -15.97749 -15.84199 -15.49725 -15.19575 -15.03785 -14.77450 -13.55320 -13.46974 -13.34738 -13.25685 -12.97203 -12.90802 -12.82199 -12.56223 -12.36892 -12.00599 -11.94875 -11.90254 -11.05401 -11.03834 -10.86133 -10.78440 -10.08710 -9.87449 -8.56119 -8.44951 -6.22149 -1.26938 -0.46437 -0.27244 0.39727 0.92607 1.26326 1.27356 1.43162 1.61631 1.62536 1.86930 1.92923 2.19978 2.54034 2.86306 3.12131 3.14235 3.54129 3.81483 4.46659 4.56081 4.61908 5.02402 5.06098 5.27774 5.35605 5.97584 6.29917 6.53269 6.74604 7.14994 7.47732 7.69240 8.54362 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.034622 B = 0.002646 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.549640 B =10577.642249 C =11376.347017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.006 4.006 3 Si 1.017 2.983 4 H -0.239 1.239 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.351 4.351 8 H 0.144 0.856 9 N -0.167 5.167 10 C -0.071 4.071 11 C -0.047 4.047 12 N -0.599 5.599 13 C 0.577 3.423 14 O -0.534 6.534 15 C -0.270 4.270 16 S 0.624 5.376 17 N -0.527 5.527 18 C 0.135 3.865 19 Cl 0.020 6.980 20 C -0.045 4.045 21 Cl 0.016 6.984 22 C -0.051 4.051 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.194 0.806 26 H 0.418 0.582 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -18.984 -0.034 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.161 1.161 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.482 4.482 8 H 0.161 0.839 9 N 0.065 4.935 10 C -0.221 4.221 11 C -0.153 4.153 12 N -0.244 5.244 13 C 0.362 3.638 14 O -0.411 6.411 15 C -0.404 4.404 16 S 0.776 5.224 17 N -0.363 5.363 18 C -0.062 4.062 19 Cl 0.047 6.953 20 C -0.091 4.091 21 Cl 0.045 6.955 22 C -0.227 4.227 23 N -0.143 5.143 24 H 0.085 0.915 25 H 0.211 0.789 26 H 0.256 0.744 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.600 -18.030 -0.040 19.200 hybrid contribution -1.697 -0.346 0.009 1.732 sum 4.902 -18.376 -0.031 19.018 Atomic orbital electron populations 1.70392 1.08428 1.29021 1.37378 1.26848 0.96417 1.04315 0.94185 0.84560 0.79205 0.74570 0.78045 1.16141 1.20005 1.19992 1.20678 0.93039 0.80767 1.53722 0.83860 1.44860 1.03631 1.04887 1.40161 1.22031 0.98951 0.83926 1.17235 1.17153 0.93090 0.82481 1.22586 1.42031 1.08666 1.02978 1.70726 1.16589 0.84640 0.83635 0.78902 1.90781 1.26601 1.73746 1.50014 1.26484 1.02449 0.98294 1.13165 1.81441 1.04113 0.83650 1.53194 1.71441 1.11029 1.29567 1.24228 1.20752 0.88297 0.89189 1.08006 1.98431 1.61950 1.38302 1.96609 1.20986 0.90149 0.91085 1.06831 1.98432 1.06650 1.94282 1.96105 1.24214 0.99072 0.90868 1.08531 1.78197 0.92089 1.16566 1.27405 0.91453 0.78877 0.74414 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.49 11.81 21.66 0.26 -46.24 15 2 C -0.01 -0.30 5.50 84.95 0.47 0.17 15 3 Si 1.02 37.30 29.55 68.60 2.03 39.32 15 4 H -0.24 -7.73 7.11 99.48 0.71 -7.03 15 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 6 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 7 C -0.35 -17.73 10.25 84.01 0.86 -16.86 15 8 H 0.14 6.18 7.83 -2.91 -0.02 6.16 15 9 N -0.17 -8.80 3.74 -190.01 -0.71 -9.51 15 10 C -0.07 -2.99 11.49 83.38 0.96 -2.03 15 11 C -0.05 -1.99 6.90 37.75 0.26 -1.73 15 12 N -0.60 -18.38 5.46 -307.26 -1.68 -20.05 15 13 C 0.58 18.63 7.77 86.53 0.67 19.31 15 14 O -0.53 -21.83 12.81 -4.26 -0.05 -21.88 15 15 C -0.27 -6.53 6.76 24.62 0.17 -6.37 15 16 S 0.62 9.28 22.81 -56.49 -1.29 8.00 15 17 N -0.53 -10.29 11.28 -76.42 -0.86 -11.16 15 18 C 0.14 2.96 7.16 84.93 0.61 3.56 15 19 Cl 0.02 0.39 28.63 -2.72 -0.08 0.31 15 20 C -0.05 -1.13 6.52 22.24 0.15 -0.98 15 21 Cl 0.02 0.45 27.26 -2.72 -0.07 0.38 15 22 C -0.05 -2.64 10.85 85.43 0.93 -1.71 15 23 N -0.31 -18.04 10.40 -56.45 -0.59 -18.63 15 24 H 0.28 14.32 8.31 -92.71 -0.77 13.55 15 25 H 0.19 6.12 8.06 -2.91 -0.02 6.09 15 26 H 0.42 8.57 8.20 -92.71 -0.76 7.81 15 27 H 0.17 8.80 5.91 -2.91 -0.02 8.79 15 Total: -1.00 -71.89 296.57 2.54 -69.35 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.53 Total: 16.78 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 5.07 Total: -6.65 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -3.58 Total: -105.59 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.32 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -1.29 Total: 8.00 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.15 Total: 0.68 kcal Total: -71.89 2.54 -69.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361923312.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.119 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds