Wall clock time and date at job start Tue Mar 31 2020 16:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00403 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00142 * 3 2 1 7 7 C 1.39001 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.37298 * 119.99832 * 0.27643 * 7 2 1 10 10 C 1.36097 * 125.96057 * 179.72119 * 9 7 2 11 11 C 1.36331 * 107.47331 * 179.97438 * 10 9 7 12 12 C 1.48459 * 126.19932 * 179.97438 * 11 10 9 13 13 N 1.34052 * 126.67525 * 0.02942 * 12 11 10 14 14 N 1.28981 * 107.26766 * 179.97438 * 13 12 11 15 15 N 1.28723 * 108.94974 * 0.02562 * 14 13 12 16 16 H 0.97001 * 125.33941 * 179.97438 * 15 14 13 17 17 N 1.28876 * 109.31795 * 359.72730 * 15 14 13 18 18 C 1.41201 * 107.60402 * 0.02562 * 11 10 9 19 19 I 2.09497 * 125.86477 * 180.02562 * 18 11 10 20 20 N 1.30784 * 108.26493 * 359.71213 * 18 11 10 21 21 H 0.96996 * 120.00257 * 359.97438 * 1 2 3 22 22 H 1.08001 * 126.26492 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7068 1.3464 0.0006 5 1 1.8880 2.3964 -1.2124 6 1 1.8881 2.3964 1.2125 7 6 2.0078 -1.2038 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8757 -3.6357 -0.0134 11 6 0.8548 -4.5393 -0.0176 12 6 0.9922 -6.0174 -0.0257 13 7 2.1369 -6.7151 -0.0298 14 7 1.8227 -7.9661 -0.0361 15 7 0.5401 -8.0750 -0.0366 16 1 0.0480 -8.9109 -0.0411 17 7 0.0124 -6.8993 -0.0249 18 6 -0.3570 -3.8145 -0.0139 19 53 -2.2818 -4.6414 -0.0168 20 7 -0.0713 -2.5383 -0.0016 21 1 -0.4850 0.8400 0.0004 22 1 2.9312 -3.8644 -0.0150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606354268.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:46 Heat of formation + Delta-G solvation = 213.085614 kcal Electronic energy + Delta-G solvation = -14057.363755 eV Core-core repulsion = 11318.829617 eV Total energy + Delta-G solvation = -2738.534138 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 331.958 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.70314 -39.82976 -34.18356 -33.59169 -32.60202 -31.29663 -28.90333 -28.31269 -25.16682 -23.86957 -22.82534 -20.28610 -19.50264 -18.24117 -17.65482 -16.44296 -15.54644 -14.78815 -13.74848 -13.69460 -13.28494 -12.95688 -11.89350 -11.82838 -11.45004 -11.42675 -10.96461 -10.76354 -10.61624 -10.50964 -10.43801 -9.94858 -9.40916 -9.27678 -8.90782 -8.27204 -7.44400 -6.81668 -4.56456 1.67480 1.87077 2.36238 2.86004 2.86667 2.96384 3.02484 3.38251 3.67226 4.01907 4.39972 4.79311 4.82923 4.99863 6.05726 6.16717 6.29380 6.59389 6.84697 6.95556 7.03956 7.37306 7.66752 8.31914 8.86220 8.98428 9.16527 10.13695 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.006527 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.631585 B = 4288.606285 C = 5812.387097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.047 3.953 3 Si 0.940 3.060 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.318 4.318 8 H 0.127 0.873 9 N -0.129 5.129 10 C -0.013 4.013 11 C -0.186 4.186 12 C 0.287 3.713 13 N -0.288 5.288 14 N -0.073 5.073 15 N -0.244 5.244 16 H 0.466 0.534 17 N -0.307 5.307 18 C 0.025 3.975 19 I 0.011 6.989 20 N -0.228 5.228 21 H 0.280 0.720 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 -8.467 -0.058 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.172 4.172 3 Si 0.763 3.237 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.452 4.452 8 H 0.145 0.855 9 N 0.107 4.893 10 C -0.167 4.167 11 C -0.208 4.208 12 C 0.009 3.991 13 N -0.162 5.162 14 N -0.068 5.068 15 N -0.089 5.089 16 H 0.318 0.682 17 N -0.159 5.159 18 C -0.272 4.272 19 I 0.154 6.846 20 N -0.057 5.057 21 H 0.091 0.909 22 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.567 -8.176 -0.048 9.891 hybrid contribution 1.353 0.310 -0.009 1.388 sum -4.214 -7.866 -0.056 8.924 Atomic orbital electron populations 1.70178 1.06284 1.28733 1.33381 1.25743 0.95813 1.00707 0.94922 0.85660 0.79794 0.79521 0.78701 1.18334 1.19664 1.19666 1.20203 0.92128 0.80105 1.52715 0.85527 1.44881 1.03481 1.04313 1.36669 1.21943 0.98100 0.83931 1.12766 1.16397 0.92245 0.84766 1.27355 1.22889 0.83716 0.94904 0.97590 1.76014 1.24939 0.95435 1.19844 1.78713 0.97122 1.15101 1.15884 1.47665 1.04622 1.08903 1.47707 0.68179 1.75226 1.25458 0.90331 1.24860 1.26364 0.94280 0.94246 1.12303 1.96132 1.08897 1.80606 1.99002 1.78325 0.90815 1.12714 1.23850 0.90924 0.81816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.63 11.80 55.50 0.66 -18.98 14 2 C 0.05 1.13 5.50 -17.50 -0.10 1.03 14 3 Si 0.94 17.64 29.55 -169.99 -5.02 12.61 14 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 14 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 7 C -0.32 -7.79 10.24 -14.82 -0.15 -7.94 14 8 H 0.13 2.76 7.83 -52.49 -0.41 2.35 14 9 N -0.13 -3.31 3.72 -11.35 -0.04 -3.35 14 10 C -0.01 -0.31 11.40 -16.35 -0.19 -0.50 14 11 C -0.19 -4.27 6.10 -105.25 -0.64 -4.91 14 12 C 0.29 5.90 8.14 -156.29 -1.27 4.62 14 13 N -0.29 -5.65 12.53 32.16 0.40 -5.25 14 14 N -0.07 -1.20 13.47 60.35 0.81 -0.39 14 15 N -0.24 -3.42 7.90 60.35 0.48 -2.94 14 16 H 0.47 3.99 8.96 -340.37 -3.05 0.94 14 17 N -0.31 -5.44 10.79 32.17 0.35 -5.09 14 18 C 0.03 0.60 7.71 -16.87 -0.13 0.47 14 19 I 0.01 0.22 39.07 -73.02 -2.85 -2.64 14 20 N -0.23 -6.03 10.36 30.23 0.31 -5.72 14 21 H 0.28 6.59 8.31 -40.82 -0.34 6.25 14 22 H 0.16 3.33 8.06 -52.49 -0.42 2.91 14 LS Contribution 242.76 15.07 3.66 3.66 Total: -1.00 -29.71 242.76 -6.75 -36.46 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.02 Total: -1.16 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.48 Total: -7.23 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 2.97 Total: -41.71 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.02 Total: 12.61 kcal Atomic # 53 Polarization: 0.22 SS G_CDS: -2.85 Total: -2.64 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.71 -6.75 -36.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606354268.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.550 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 219.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds