Wall clock time and date at job start Tue Mar 31 2020 16:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00403 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00142 * 3 2 1 7 7 C 1.39001 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.37298 * 119.99832 * 0.27643 * 7 2 1 10 10 C 1.36097 * 125.96057 * 179.72119 * 9 7 2 11 11 C 1.36331 * 107.47331 * 179.97438 * 10 9 7 12 12 C 1.48459 * 126.19932 * 179.97438 * 11 10 9 13 13 N 1.34052 * 126.67525 * 0.02942 * 12 11 10 14 14 N 1.28981 * 107.26766 * 179.97438 * 13 12 11 15 15 N 1.28723 * 108.94974 * 0.02562 * 14 13 12 16 16 H 0.97001 * 125.33941 * 179.97438 * 15 14 13 17 17 N 1.28876 * 109.31795 * 359.72730 * 15 14 13 18 18 C 1.41201 * 107.60402 * 0.02562 * 11 10 9 19 19 I 2.09497 * 125.86477 * 180.02562 * 18 11 10 20 20 N 1.30784 * 108.26493 * 359.71213 * 18 11 10 21 21 H 0.96996 * 120.00257 * 359.97438 * 1 2 3 22 22 H 1.08001 * 126.26492 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7068 1.3464 0.0006 5 1 1.8880 2.3964 -1.2124 6 1 1.8881 2.3964 1.2125 7 6 2.0078 -1.2038 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8757 -3.6357 -0.0134 11 6 0.8548 -4.5393 -0.0176 12 6 0.9922 -6.0174 -0.0257 13 7 2.1369 -6.7151 -0.0298 14 7 1.8227 -7.9661 -0.0361 15 7 0.5401 -8.0750 -0.0366 16 1 0.0480 -8.9109 -0.0411 17 7 0.0124 -6.8993 -0.0249 18 6 -0.3570 -3.8145 -0.0139 19 53 -2.2818 -4.6414 -0.0168 20 7 -0.0713 -2.5383 -0.0016 21 1 -0.4850 0.8400 0.0004 22 1 2.9312 -3.8644 -0.0150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606354268.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:46 Heat of formation + Delta-G solvation = 192.835933 kcal Electronic energy + Delta-G solvation = -14058.241847 eV Core-core repulsion = 11318.829617 eV Total energy + Delta-G solvation = -2739.412230 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 331.958 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.12742 -41.60949 -35.89569 -35.05084 -34.15363 -33.02939 -30.61428 -30.06985 -26.93054 -25.27686 -24.41121 -21.98693 -21.24776 -19.68400 -19.37775 -17.84507 -17.34833 -16.35825 -15.56340 -15.29439 -14.77747 -14.67692 -13.57988 -13.40409 -13.00986 -12.99742 -12.68482 -12.21072 -12.03060 -12.02814 -11.91533 -11.55844 -11.17684 -10.97755 -10.56990 -10.05886 -9.19090 -8.57661 -6.41048 0.14040 0.28810 0.76847 1.29464 1.42385 1.60864 1.70469 1.70896 2.11211 2.31786 2.73109 3.01492 3.22555 3.46604 4.36701 4.57587 4.66397 4.97832 5.09082 5.26534 5.63953 5.87229 5.91196 6.54389 7.21516 7.33683 7.44140 8.40850 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.006527 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.631585 B = 4288.606285 C = 5812.387097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.002 3.998 3 Si 1.018 2.982 4 H -0.243 1.243 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.348 4.348 8 H 0.146 0.854 9 N -0.152 5.152 10 C -0.018 4.018 11 C -0.191 4.191 12 C 0.269 3.731 13 N -0.308 5.308 14 N -0.063 5.063 15 N -0.208 5.208 16 H 0.490 0.510 17 N -0.301 5.301 18 C 0.002 3.998 19 I 0.056 6.944 20 N -0.268 5.268 21 H 0.282 0.718 22 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -9.472 -0.068 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.212 4.212 3 Si 0.837 3.163 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.480 4.480 8 H 0.163 0.837 9 N 0.083 4.917 10 C -0.171 4.171 11 C -0.212 4.212 12 C -0.011 4.011 13 N -0.182 5.182 14 N -0.058 5.058 15 N -0.059 5.059 16 H 0.348 0.652 17 N -0.154 5.154 18 C -0.294 4.294 19 I 0.197 6.803 20 N -0.098 5.098 21 H 0.092 0.908 22 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.165 -9.224 -0.058 10.572 hybrid contribution 1.151 0.328 -0.006 1.197 sum -4.014 -8.896 -0.064 9.760 Atomic orbital electron populations 1.70312 1.08221 1.29763 1.35240 1.26844 0.96516 1.04163 0.93658 0.84528 0.79086 0.74290 0.78370 1.16563 1.19594 1.19593 1.20839 0.93245 0.80476 1.53424 0.83717 1.45155 1.03550 1.05221 1.37804 1.22413 0.99267 0.83585 1.11882 1.16650 0.91953 0.86210 1.26414 1.22608 0.84646 0.94343 0.99480 1.76005 1.25133 0.96261 1.20753 1.78660 0.97726 1.13847 1.15561 1.47707 1.04171 1.09103 1.44890 0.65181 1.75151 1.25132 0.91036 1.24054 1.27082 0.96907 0.93857 1.11527 1.96049 1.05689 1.79588 1.98982 1.78220 0.91771 1.14398 1.25370 0.90754 0.79813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.89 11.80 21.66 0.26 -42.63 14 2 C 0.00 0.11 5.50 84.96 0.47 0.58 14 3 Si 1.02 36.08 29.55 68.60 2.03 38.11 14 4 H -0.24 -7.83 7.11 99.48 0.71 -7.12 14 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 14 6 H -0.27 -9.47 7.11 99.48 0.71 -8.76 14 7 C -0.35 -17.26 10.24 84.02 0.86 -16.40 14 8 H 0.15 6.30 7.83 -2.91 -0.02 6.27 14 9 N -0.15 -7.96 3.72 -189.83 -0.71 -8.67 14 10 C -0.02 -0.83 11.40 83.59 0.95 0.12 14 11 C -0.19 -8.77 6.10 -20.27 -0.12 -8.89 14 12 C 0.27 10.68 8.14 137.38 1.12 11.80 14 13 N -0.31 -11.59 12.53 -52.18 -0.65 -12.25 14 14 N -0.06 -1.91 13.47 37.02 0.50 -1.41 14 15 N -0.21 -5.20 7.90 37.02 0.29 -4.91 14 16 H 0.49 6.58 8.96 -347.54 -3.12 3.46 14 17 N -0.30 -10.00 10.79 -52.12 -0.56 -10.56 14 18 C 0.00 0.09 7.71 85.58 0.66 0.75 14 19 I 0.06 2.09 39.07 -18.82 -0.74 1.35 14 20 N -0.27 -14.52 10.36 -58.27 -0.60 -15.13 14 21 H 0.28 13.70 8.31 -92.71 -0.77 12.93 14 22 H 0.18 7.47 8.06 -2.91 -0.02 7.45 14 Total: -1.00 -64.61 242.76 1.94 -62.67 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -1.81 Total: 5.47 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 3.94 Total: -12.05 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -1.48 Total: -95.56 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Atomic # 53 Polarization: 2.09 SS G_CDS: -0.74 Total: 1.35 kcal Total: -64.61 1.94 -62.67 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606354268.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.509 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds