Wall clock time and date at job start Tue Mar 31 2020 16:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99594 * 2 1 4 4 H 1.48503 * 109.46682 * 239.99394 * 3 2 1 5 5 H 1.48493 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47036 * 120.00031 * 3 2 1 7 7 C 1.37881 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99864 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99473 * 179.97438 * 10 9 7 12 12 C 1.53012 * 109.46589 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47012 * 64.99939 * 12 11 10 14 14 C 1.34232 * 116.99553 * 180.02562 * 13 12 11 15 15 O 1.20824 * 120.00074 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99555 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.46921 * 304.99548 * 16 14 13 18 18 O 1.42903 * 109.46760 * 184.99928 * 16 14 13 19 19 C 1.50693 * 109.47187 * 64.99773 * 16 14 13 20 20 C 1.38230 * 119.99745 * 94.97720 * 19 16 14 21 21 C 1.38210 * 120.03492 * 180.02562 * 20 19 16 22 22 C 1.38385 * 120.03876 * 0.02562 * 21 20 19 23 23 Cl 1.73607 * 119.99821 * 179.97438 * 22 21 20 24 24 C 1.38283 * 119.99953 * 359.97438 * 22 21 20 25 25 C 1.38447 * 120.00204 * 274.99427 * 19 16 14 26 26 F 1.35102 * 120.01663 * 0.02562 * 25 19 16 27 27 H 0.96999 * 120.00466 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47763 * 59.99518 * 9 7 2 29 29 H 1.09003 * 109.47088 * 299.99437 * 9 7 2 30 30 H 1.08998 * 109.47368 * 60.00727 * 11 10 9 31 31 H 1.09001 * 109.47625 * 299.99837 * 11 10 9 32 32 H 1.09002 * 109.46809 * 305.00022 * 12 11 10 33 33 H 1.08996 * 109.46600 * 184.99936 * 12 11 10 34 34 H 0.96703 * 113.99789 * 299.99679 * 18 16 14 35 35 H 1.07993 * 119.98604 * 0.04180 * 20 19 16 36 36 H 1.08003 * 119.97444 * 180.27414 * 21 20 19 37 37 H 1.08002 * 120.02204 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6483 -5.9562 0.0017 13 8 3.3995 -5.8879 1.2424 14 6 4.3942 -6.7749 1.4020 15 8 4.6292 -7.5819 0.5340 16 6 5.2173 -6.7649 2.6644 17 1 5.6359 -5.7702 2.8172 18 8 6.2779 -7.7156 2.5490 19 6 4.3429 -7.1275 3.8369 20 6 4.2850 -8.4366 4.2770 21 6 3.4829 -8.7702 5.3520 22 6 2.7366 -7.7941 5.9887 23 17 1.7290 -8.2144 7.3385 24 6 2.7934 -6.4841 5.5497 25 6 3.5975 -6.1497 4.4732 26 9 3.6532 -4.8703 4.0428 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 0.9448 -4.9827 -0.8887 31 1 0.9453 -4.9822 0.8913 32 1 3.3219 -5.7960 -0.8402 33 1 2.1823 -6.9375 -0.0874 34 1 5.9781 -8.6245 2.4110 35 1 4.8669 -9.1991 3.7808 36 1 3.4418 -9.7925 5.6979 37 1 2.2108 -5.7221 6.0461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815247357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:31 Heat of formation + Delta-G solvation = -229.043467 kcal Electronic energy + Delta-G solvation = -25809.484822 eV Core-core repulsion = 21491.817407 eV Total energy + Delta-G solvation = -4317.667415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.07748 -41.98224 -40.40577 -38.94986 -38.25653 -37.57279 -37.05208 -34.96489 -32.92838 -31.94741 -31.62520 -29.20236 -28.36894 -24.65014 -24.26629 -24.07797 -23.30466 -22.16631 -19.56346 -19.28088 -18.77120 -18.45141 -18.19948 -17.79100 -17.59894 -17.03369 -16.72665 -16.50767 -16.38968 -16.12128 -15.62559 -15.36271 -15.27273 -14.62497 -14.53586 -14.36155 -14.17776 -13.84891 -13.76813 -13.32597 -13.09541 -12.95023 -12.81386 -12.73382 -12.65311 -12.45191 -12.16118 -12.08952 -12.00671 -11.81966 -11.41897 -11.31256 -10.90733 -10.29644 -10.15414 -9.80795 -8.33453 -6.45726 -0.35402 -0.06119 0.84853 0.91549 1.39373 1.41683 1.44004 1.52362 2.21543 2.33480 2.95873 3.00459 3.01973 3.08404 3.10367 3.46526 3.50680 3.78321 3.85941 3.90839 4.05376 4.20802 4.34631 4.36156 4.45422 4.60834 4.65819 4.79051 4.82629 4.93064 4.99198 5.15052 5.23353 5.49469 5.52737 5.93479 6.24971 6.46682 6.51927 6.77417 7.25750 8.78546 Molecular weight = 332.07amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.003047 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.370566 B = 9187.984754 C =10407.620786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.408 6.408 11 C 0.054 3.946 12 C 0.077 3.923 13 O -0.350 6.350 14 C 0.438 3.562 15 O -0.518 6.518 16 C 0.176 3.824 17 H 0.148 0.852 18 O -0.518 6.518 19 C -0.165 4.165 20 C -0.055 4.055 21 C -0.109 4.109 22 C -0.004 4.004 23 Cl -0.049 7.049 24 C -0.156 4.156 25 C 0.121 3.879 26 F -0.134 7.134 27 H 0.272 0.728 28 H -0.008 1.008 29 H -0.012 1.012 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.399 0.601 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.069 -22.235 12.997 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.328 6.328 11 C -0.023 4.023 12 C 0.004 3.996 13 O -0.266 6.266 14 C 0.281 3.719 15 O -0.407 6.407 16 C 0.114 3.886 17 H 0.166 0.834 18 O -0.327 6.327 19 C -0.167 4.167 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.030 4.030 23 Cl -0.019 7.019 24 C -0.175 4.175 25 C 0.101 3.899 26 F -0.113 7.113 27 H 0.080 0.920 28 H 0.010 0.990 29 H 0.005 0.995 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.252 0.748 35 H 0.196 0.804 36 H 0.193 0.807 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.414 -21.798 12.896 26.389 hybrid contribution -0.841 0.823 -0.321 1.220 sum 6.573 -20.975 12.575 25.323 Atomic orbital electron populations 1.70046 1.07660 1.28770 1.50302 1.25926 0.95972 1.03264 0.93827 0.85266 0.78169 0.76826 0.79370 1.19010 1.19788 1.19121 1.21355 0.94082 0.90962 1.52558 0.92217 1.19845 0.88507 0.84356 0.93775 1.87868 1.35491 1.14163 1.95309 1.22636 0.94491 0.83459 1.01704 1.23260 0.93168 0.99294 0.83909 1.86638 1.43585 1.54540 1.41809 1.24893 0.79128 0.77896 0.90016 1.90651 1.67647 1.38685 1.43760 1.19988 0.86181 0.97264 0.85124 0.83434 1.86734 1.30025 1.21661 1.94266 1.20262 1.01617 0.95396 0.99432 1.21117 0.96815 0.93995 0.95390 1.21419 0.95340 1.00735 0.95291 1.20836 0.96250 0.93607 0.92355 1.98409 1.67173 1.93236 1.43125 1.21124 1.01331 0.97483 0.97605 1.17498 0.98280 0.79033 0.95059 1.91611 1.94829 1.35961 1.88883 0.91960 0.98982 0.99456 0.89862 0.92890 0.90746 0.87050 0.74832 0.80416 0.80678 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.98 44.81 29.54 68.60 2.03 46.83 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -33.42 9.43 25.60 0.24 -33.18 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.90 5.69 71.23 0.41 12.31 16 10 O -0.41 -20.32 10.30 -145.57 -1.50 -21.82 16 11 C 0.05 1.97 6.33 71.99 0.46 2.43 16 12 C 0.08 2.36 5.84 71.99 0.42 2.78 16 13 O -0.35 -11.44 10.18 -48.79 -0.50 -11.94 16 14 C 0.44 12.13 7.26 71.24 0.52 12.65 16 15 O -0.52 -15.44 16.07 28.39 0.46 -14.98 16 16 C 0.18 3.79 3.50 29.10 0.10 3.89 16 17 H 0.15 3.34 7.79 -2.39 -0.02 3.32 16 18 O -0.52 -9.19 12.65 -129.95 -1.64 -10.83 16 19 C -0.17 -3.14 5.05 -19.82 -0.10 -3.24 16 20 C -0.06 -0.66 9.30 22.26 0.21 -0.45 16 21 C -0.11 -1.22 9.83 22.30 0.22 -1.00 16 22 C 0.00 -0.06 6.32 22.32 0.14 0.09 16 23 Cl -0.05 -0.71 28.96 -2.72 -0.08 -0.79 16 24 C -0.16 -3.08 9.81 22.33 0.22 -2.86 16 25 C 0.12 2.81 7.24 22.37 0.16 2.97 16 26 F -0.13 -4.07 16.57 44.97 0.75 -3.32 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 33 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 34 H 0.40 4.06 7.07 -74.06 -0.52 3.54 16 35 H 0.18 0.82 6.40 -2.91 -0.02 0.80 16 36 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.50 352.27 3.85 -70.65 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.60 Total: 4.50 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 3.45 Total: -2.64 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -3.18 Total: -59.57 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.75 Total: -3.32 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -74.50 3.85 -70.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815247357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.392 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds