Wall clock time and date at job start Tue Mar 31 2020 17:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00155 * 2 1 4 4 H 1.48494 * 109.47144 * 240.00264 * 3 2 1 5 5 H 1.48501 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47070 * 119.99978 * 3 2 1 7 7 C 1.37874 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00331 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.46505 * 120.00059 * 85.00324 * 10 9 7 12 12 C 1.50702 * 109.46804 * 275.00053 * 11 10 9 13 13 C 1.38234 * 120.00257 * 90.00184 * 12 11 10 14 14 C 1.38238 * 119.99675 * 180.25732 * 13 12 11 15 15 C 1.38228 * 120.00114 * 359.50218 * 14 13 12 16 16 C 1.38234 * 120.00051 * 0.47390 * 15 14 13 17 17 C 1.38235 * 119.99522 * 269.97197 * 12 11 10 18 18 S 1.65592 * 120.00085 * 264.99922 * 10 9 7 19 19 O 1.42103 * 106.40548 * 23.54238 * 18 10 9 20 20 O 1.42102 * 106.40644 * 156.46308 * 18 10 9 21 21 C 1.76201 * 107.22078 * 270.00146 * 18 10 9 22 22 C 1.38672 * 120.42026 * 269.72227 * 21 18 10 23 23 C 1.38624 * 118.42151 * 179.77880 * 22 21 18 24 24 C 1.38231 * 119.15827 * 0.51657 * 23 22 21 25 25 N 1.31852 * 120.76858 * 359.72192 * 24 23 22 26 26 C 1.31886 * 121.71935 * 0.02562 * 25 24 23 27 27 H 0.97000 * 119.99695 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46864 * 60.00349 * 9 7 2 29 29 H 1.08999 * 109.46992 * 300.00028 * 9 7 2 30 30 H 1.08993 * 109.47477 * 154.99655 * 11 10 9 31 31 H 1.08998 * 109.46807 * 34.99468 * 11 10 9 32 32 H 1.08002 * 119.99744 * 359.97115 * 13 12 11 33 33 H 1.08004 * 119.99577 * 179.72816 * 14 13 12 34 34 H 1.07999 * 119.99927 * 180.26554 * 15 14 13 35 35 H 1.08001 * 120.00294 * 179.78842 * 16 15 14 36 36 H 1.07996 * 120.00471 * 0.02562 * 17 12 11 37 37 H 1.07996 * 120.79088 * 0.02562 * 22 21 18 38 38 H 1.07999 * 120.42227 * 180.21870 * 23 22 21 39 39 H 1.08008 * 119.61766 * 179.74615 * 24 23 22 40 40 H 1.08003 * 119.61454 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7631 -4.0977 1.2634 12 6 3.9612 -3.2626 1.6351 13 6 3.8001 -2.1284 2.4088 14 6 4.8985 -1.3595 2.7452 15 6 6.1593 -1.7304 2.3167 16 6 6.3205 -2.8649 1.5435 17 6 5.2215 -3.6312 1.2029 18 16 2.6461 -4.3232 -1.4291 19 8 2.4210 -3.3558 -2.4453 20 8 3.9104 -4.9303 -1.2003 21 6 1.5113 -5.6366 -1.7325 22 6 1.7744 -6.9145 -1.2627 23 6 0.8510 -7.9156 -1.5210 24 6 -0.2880 -7.6113 -2.2426 25 7 -0.5032 -6.3856 -2.6782 26 6 0.3508 -5.4075 -2.4468 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.0664 -5.1385 1.1509 31 1 2.0098 -4.0215 2.0475 32 1 2.8154 -1.8405 2.7464 33 1 4.7721 -0.4709 3.3460 34 1 7.0179 -1.1321 2.5832 35 1 7.3051 -3.1529 1.2058 36 1 5.3474 -4.5173 0.5986 37 1 2.6754 -7.1239 -0.7052 38 1 1.0217 -8.9216 -1.1672 39 1 -1.0104 -8.3865 -2.4518 40 1 0.1407 -4.4161 -2.8201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107140018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:27 Heat of formation + Delta-G solvation = -3.018376 kcal Electronic energy + Delta-G solvation = -26654.651183 eV Core-core repulsion = 22947.723729 eV Total energy + Delta-G solvation = -3706.927455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.09102 -38.81033 -36.75409 -35.72037 -35.28688 -32.69702 -32.63538 -31.48976 -30.78450 -30.31902 -27.42054 -24.99794 -23.98943 -23.73380 -22.49425 -21.94044 -20.83037 -18.79223 -17.69930 -17.05806 -16.72803 -16.55607 -16.21199 -16.16113 -15.23608 -14.74188 -14.46156 -14.42365 -14.39962 -14.03158 -13.50663 -13.29543 -13.10708 -12.84929 -12.58536 -12.43748 -12.19457 -12.04564 -11.64370 -11.55831 -11.40211 -11.18896 -10.97774 -10.81949 -10.71182 -10.53951 -10.36465 -10.24627 -10.01629 -9.77724 -9.56557 -9.50360 -8.47438 -8.34308 -8.30639 -8.06395 -6.05959 -4.07876 0.52007 0.90012 1.09282 1.87350 1.99763 3.34308 3.37962 3.38644 3.44381 3.70501 4.19197 4.33342 4.40200 4.46859 4.49251 4.67439 4.82261 5.11040 5.16622 5.25898 5.30941 5.32146 5.46888 5.54831 5.58721 5.68522 5.80645 5.82504 5.92490 6.12260 6.14730 6.27325 6.45490 6.52451 6.64720 6.98967 7.04978 7.10935 7.20871 7.33342 7.48235 7.57097 7.72373 7.92693 8.18624 8.95258 9.56809 11.02852 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.005485 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.363489 B = 5103.965527 C = 6709.396184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.255 3.745 10 N -0.975 5.975 11 C 0.174 3.826 12 C -0.099 4.099 13 C -0.065 4.065 14 C -0.132 4.132 15 C -0.123 4.123 16 C -0.137 4.137 17 C -0.107 4.107 18 S 2.688 3.312 19 O -0.936 6.936 20 O -0.968 6.968 21 C -0.731 4.731 22 C 0.020 3.980 23 C -0.200 4.200 24 C 0.142 3.858 25 N -0.497 5.497 26 C 0.203 3.797 27 H 0.263 0.737 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -13.783 3.131 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.133 3.867 10 N -0.815 5.815 11 C 0.048 3.952 12 C -0.101 4.101 13 C -0.083 4.083 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.126 4.126 18 S 2.774 3.226 19 O -0.926 6.926 20 O -0.958 6.958 21 C -0.816 4.816 22 C -0.007 4.007 23 C -0.220 4.220 24 C -0.015 4.015 25 N -0.206 5.206 26 C 0.045 3.955 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.871 -13.295 2.100 14.005 hybrid contribution 0.553 0.463 0.517 0.887 sum 4.424 -12.832 2.617 13.823 Atomic orbital electron populations 1.69906 1.05923 1.27128 1.50654 1.24865 0.94752 0.99019 0.95095 0.86674 0.79665 0.82965 0.78961 1.20079 1.21363 1.20020 1.21422 0.93758 0.90073 1.50487 0.91712 1.19181 0.86769 0.82186 0.98532 1.57549 1.59396 1.45280 1.19235 1.20002 0.93175 0.95072 0.86984 1.20152 0.94551 0.97278 0.98131 1.21076 0.98694 0.92899 0.95678 1.21073 0.92880 0.99669 1.01405 1.21049 0.97081 0.97108 0.98933 1.21004 0.98460 0.96144 0.99879 1.21312 0.92149 1.00466 0.98631 1.02337 0.73586 0.72925 0.73787 1.93619 1.85458 1.57314 1.56173 1.93489 1.37814 1.78755 1.85740 1.32602 1.17992 1.17305 1.13672 1.21350 0.97440 0.90681 0.91190 1.22221 0.96453 1.00865 1.02462 1.23126 0.94702 0.93830 0.89857 1.67875 1.31127 1.00825 1.20818 1.22741 0.86284 0.98819 0.87675 0.92706 0.94310 0.94443 0.90849 0.89748 0.85492 0.86758 0.87049 0.86858 0.84991 0.83308 0.84019 0.82212 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.58 8.04 -34.44 -0.28 -13.85 16 8 H 0.06 1.74 6.83 -52.49 -0.36 1.38 16 9 C 0.25 5.91 5.12 -5.19 -0.03 5.88 16 10 N -0.98 -18.66 2.79 -116.95 -0.33 -18.98 16 11 C 0.17 2.79 5.50 -5.19 -0.03 2.77 16 12 C -0.10 -1.74 4.82 -104.62 -0.50 -2.24 16 13 C -0.06 -1.16 8.03 -39.58 -0.32 -1.48 16 14 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 15 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 16 C -0.14 -2.15 10.05 -39.58 -0.40 -2.55 16 17 C -0.11 -1.81 9.28 -39.58 -0.37 -2.18 16 18 S 2.69 50.11 5.61 -107.50 -0.60 49.51 16 19 O -0.94 -21.19 16.28 -57.17 -0.93 -22.12 16 20 O -0.97 -17.80 14.45 -57.17 -0.83 -18.63 16 21 C -0.73 -11.41 5.99 -39.44 -0.24 -11.65 16 22 C 0.02 0.25 9.65 -39.28 -0.38 -0.12 16 23 C -0.20 -2.07 10.11 -39.44 -0.40 -2.47 16 24 C 0.14 1.62 11.18 -17.55 -0.20 1.42 16 25 N -0.50 -7.43 10.36 -13.25 -0.14 -7.57 16 26 C 0.20 3.28 10.69 -17.55 -0.19 3.09 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 29 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 30 H 0.07 0.96 7.55 -51.93 -0.39 0.57 16 31 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 32 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 2.17 6.60 -52.49 -0.35 1.82 16 37 H 0.15 1.55 7.70 -52.49 -0.40 1.14 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.18 2.85 7.63 -52.48 -0.40 2.45 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.62 354.17 -10.78 -43.40 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.80 Total: 3.73 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -4.21 Total: -26.65 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.27 Total: -51.03 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.76 Total: -40.74 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 50.11 SS G_CDS: -0.60 Total: 49.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.62 -10.78 -43.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107140018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.381 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds