Wall clock time and date at job start Tue Mar 31 2020 17:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00155 * 2 1 4 4 H 1.48494 * 109.47144 * 240.00264 * 3 2 1 5 5 H 1.48501 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47070 * 119.99978 * 3 2 1 7 7 C 1.37874 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00331 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.46505 * 120.00059 * 85.00324 * 10 9 7 12 12 C 1.50702 * 109.46804 * 275.00053 * 11 10 9 13 13 C 1.38234 * 120.00257 * 90.00184 * 12 11 10 14 14 C 1.38238 * 119.99675 * 180.25732 * 13 12 11 15 15 C 1.38228 * 120.00114 * 359.50218 * 14 13 12 16 16 C 1.38234 * 120.00051 * 0.47390 * 15 14 13 17 17 C 1.38235 * 119.99522 * 269.97197 * 12 11 10 18 18 S 1.65592 * 120.00085 * 264.99922 * 10 9 7 19 19 O 1.42103 * 106.40548 * 23.54238 * 18 10 9 20 20 O 1.42102 * 106.40644 * 156.46308 * 18 10 9 21 21 C 1.76201 * 107.22078 * 270.00146 * 18 10 9 22 22 C 1.38672 * 120.42026 * 269.72227 * 21 18 10 23 23 C 1.38624 * 118.42151 * 179.77880 * 22 21 18 24 24 C 1.38231 * 119.15827 * 0.51657 * 23 22 21 25 25 N 1.31852 * 120.76858 * 359.72192 * 24 23 22 26 26 C 1.31886 * 121.71935 * 0.02562 * 25 24 23 27 27 H 0.97000 * 119.99695 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46864 * 60.00349 * 9 7 2 29 29 H 1.08999 * 109.46992 * 300.00028 * 9 7 2 30 30 H 1.08993 * 109.47477 * 154.99655 * 11 10 9 31 31 H 1.08998 * 109.46807 * 34.99468 * 11 10 9 32 32 H 1.08002 * 119.99744 * 359.97115 * 13 12 11 33 33 H 1.08004 * 119.99577 * 179.72816 * 14 13 12 34 34 H 1.07999 * 119.99927 * 180.26554 * 15 14 13 35 35 H 1.08001 * 120.00294 * 179.78842 * 16 15 14 36 36 H 1.07996 * 120.00471 * 0.02562 * 17 12 11 37 37 H 1.07996 * 120.79088 * 0.02562 * 22 21 18 38 38 H 1.07999 * 120.42227 * 180.21870 * 23 22 21 39 39 H 1.08008 * 119.61766 * 179.74615 * 24 23 22 40 40 H 1.08003 * 119.61454 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7631 -4.0977 1.2634 12 6 3.9612 -3.2626 1.6351 13 6 3.8001 -2.1284 2.4088 14 6 4.8985 -1.3595 2.7452 15 6 6.1593 -1.7304 2.3167 16 6 6.3205 -2.8649 1.5435 17 6 5.2215 -3.6312 1.2029 18 16 2.6461 -4.3232 -1.4291 19 8 2.4210 -3.3558 -2.4453 20 8 3.9104 -4.9303 -1.2003 21 6 1.5113 -5.6366 -1.7325 22 6 1.7744 -6.9145 -1.2627 23 6 0.8510 -7.9156 -1.5210 24 6 -0.2880 -7.6113 -2.2426 25 7 -0.5032 -6.3856 -2.6782 26 6 0.3508 -5.4075 -2.4468 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 3.0664 -5.1385 1.1509 31 1 2.0098 -4.0215 2.0475 32 1 2.8154 -1.8405 2.7464 33 1 4.7721 -0.4709 3.3460 34 1 7.0179 -1.1321 2.5832 35 1 7.3051 -3.1529 1.2058 36 1 5.3474 -4.5173 0.5986 37 1 2.6754 -7.1239 -0.7052 38 1 1.0217 -8.9216 -1.1672 39 1 -1.0104 -8.3865 -2.4518 40 1 0.1407 -4.4161 -2.8201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107140018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:26 Heat of formation + Delta-G solvation = -23.849286 kcal Electronic energy + Delta-G solvation = -26655.554480 eV Core-core repulsion = 22947.723729 eV Total energy + Delta-G solvation = -3707.830751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12080 -40.10395 -38.29457 -37.25538 -36.85058 -34.60142 -33.73514 -32.51897 -32.20823 -31.60031 -29.20678 -26.50782 -25.06398 -24.78106 -24.29733 -23.25907 -22.13058 -20.14157 -19.07000 -18.48565 -18.41103 -17.79625 -17.54725 -17.44277 -16.80489 -16.25340 -16.02503 -15.75079 -15.37199 -15.15349 -15.07546 -14.59404 -14.31730 -14.13825 -14.08596 -13.84417 -13.66625 -13.45370 -13.19687 -13.14192 -13.07704 -12.93522 -12.50550 -12.45483 -12.20741 -12.10546 -11.88671 -11.63371 -11.58805 -11.32107 -10.67003 -10.53354 -10.49761 -9.89072 -9.62397 -9.46378 -8.14029 -6.20465 -0.69808 -0.38171 0.09754 0.58723 0.69641 1.39224 1.42188 1.48643 2.06361 2.44406 2.55298 2.81665 3.06803 3.19849 3.24093 3.37093 3.77951 3.81679 3.89151 4.03158 4.07472 4.26621 4.29501 4.30798 4.45382 4.59888 4.66246 4.73810 4.79921 4.85975 4.91667 4.96015 5.21257 5.29031 5.33352 5.45916 5.51308 5.72104 5.74228 5.77126 5.88677 5.94659 6.17521 6.29989 6.70238 6.86473 7.46178 8.93962 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.005485 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.363489 B = 5103.965527 C = 6709.396184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.018 3.982 3 Si 0.937 3.063 4 H -0.283 1.283 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.270 3.730 10 N -0.979 5.979 11 C 0.165 3.835 12 C -0.114 4.114 13 C -0.086 4.086 14 C -0.145 4.145 15 C -0.124 4.124 16 C -0.140 4.140 17 C -0.120 4.120 18 S 2.696 3.304 19 O -0.988 6.988 20 O -0.968 6.968 21 C -0.736 4.736 22 C 0.013 3.987 23 C -0.178 4.178 24 C 0.140 3.860 25 N -0.520 5.520 26 C 0.180 3.820 27 H 0.264 0.736 28 H 0.016 0.984 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.174 0.826 38 H 0.192 0.808 39 H 0.204 0.796 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -16.348 3.967 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.209 1.209 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.147 3.853 10 N -0.817 5.817 11 C 0.040 3.960 12 C -0.116 4.116 13 C -0.105 4.105 14 C -0.163 4.163 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.138 4.138 18 S 2.788 3.212 19 O -0.979 6.979 20 O -0.958 6.958 21 C -0.825 4.825 22 C -0.014 4.014 23 C -0.198 4.198 24 C -0.016 4.016 25 N -0.230 5.230 26 C 0.022 3.978 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.191 0.809 38 H 0.210 0.790 39 H 0.220 0.780 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.139 -15.832 2.967 16.908 hybrid contribution 0.174 1.055 0.248 1.097 sum 5.313 -14.777 3.215 16.029 Atomic orbital electron populations 1.69994 1.06960 1.27663 1.52059 1.25523 0.95458 1.01818 0.95305 0.85921 0.78774 0.80067 0.78944 1.20939 1.20760 1.18538 1.21639 0.93347 0.91470 1.49201 0.92745 1.18715 0.86905 0.82666 0.97039 1.57369 1.58809 1.44862 1.20632 1.20315 0.93135 0.96542 0.85983 1.20329 0.95359 0.97502 0.98361 1.21116 0.98630 0.93864 0.96860 1.21335 0.93258 1.00012 1.01687 1.21398 0.97486 0.97217 0.98141 1.21387 0.99385 0.95796 0.99201 1.21492 0.92380 1.01042 0.98922 1.01639 0.73839 0.72987 0.72780 1.93551 1.86362 1.60042 1.57941 1.93471 1.38241 1.78549 1.85545 1.31947 1.17281 1.17531 1.15787 1.21794 0.98948 0.89666 0.90955 1.22757 0.94564 1.02335 1.00126 1.23957 0.95937 0.93170 0.88513 1.67878 1.31133 1.02103 1.21908 1.22529 0.87333 0.98884 0.89081 0.92744 0.96572 0.94993 0.87493 0.88669 0.86882 0.85648 0.84110 0.84175 0.84583 0.80860 0.79033 0.77975 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 2 C 0.02 0.99 5.46 84.65 0.46 1.46 16 3 Si 0.94 44.66 29.54 68.60 2.03 46.68 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.52 -27.98 8.04 25.60 0.21 -27.78 16 8 H 0.05 3.01 6.83 -2.91 -0.02 2.99 16 9 C 0.27 13.08 5.12 85.63 0.44 13.52 16 10 N -0.98 -38.21 2.79 -523.91 -1.46 -39.67 16 11 C 0.16 5.24 5.50 85.63 0.47 5.71 16 12 C -0.11 -3.95 4.82 -19.87 -0.10 -4.04 16 13 C -0.09 -3.10 8.03 22.27 0.18 -2.92 16 14 C -0.14 -4.75 10.05 22.27 0.22 -4.52 16 15 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 16 C -0.14 -4.12 10.05 22.27 0.22 -3.90 16 17 C -0.12 -3.92 9.28 22.27 0.21 -3.71 16 18 S 2.70 102.44 5.61 -56.49 -0.32 102.13 16 19 O -0.99 -47.28 16.28 -128.00 -2.08 -49.37 16 20 O -0.97 -34.92 14.45 -128.00 -1.85 -36.77 16 21 C -0.74 -22.71 5.99 22.36 0.13 -22.58 16 22 C 0.01 0.29 9.65 22.47 0.22 0.50 16 23 C -0.18 -2.86 10.11 22.36 0.23 -2.64 16 24 C 0.14 2.70 11.18 84.69 0.95 3.65 16 25 N -0.52 -15.09 10.36 -195.83 -2.03 -17.12 16 26 C 0.18 5.98 10.69 84.67 0.90 6.89 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.83 16 28 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 29 H 0.03 1.57 8.00 -2.39 -0.02 1.55 16 30 H 0.11 2.61 7.55 -2.39 -0.02 2.59 16 31 H 0.10 2.77 7.95 -2.39 -0.02 2.75 16 32 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.14 4.26 6.60 -2.91 -0.02 4.24 16 37 H 0.17 2.92 7.70 -2.91 -0.02 2.90 16 38 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.15 5.52 7.63 -2.91 -0.02 5.50 16 Total: -1.00 -73.53 354.17 0.59 -72.94 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.05 Total: 18.30 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.97 Total: -43.76 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -3.20 Total: -110.15 kcal Atomic # 8 Polarization: -82.21 SS G_CDS: -3.93 Total: -86.14 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 102.44 SS G_CDS: -0.32 Total: 102.13 kcal Total: -73.53 0.59 -72.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107140018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.096 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds