Wall clock time and date at job start Tue Mar 31 2020 16:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99710 * 2 1 4 4 H 1.48498 * 109.47212 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47044 * 30.00347 * 3 2 1 6 6 H 1.48501 * 109.46596 * 149.99954 * 3 2 1 7 7 C 1.37879 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88489 * 59.30585 * 9 7 2 11 11 C 1.55157 * 111.03921 * 295.40038 * 9 7 2 12 12 C 1.54326 * 102.93823 * 206.41183 * 11 9 7 13 13 N 1.47013 * 107.27435 * 22.19004 * 12 11 9 14 14 C 1.34778 * 125.64773 * 181.09631 * 13 12 11 15 15 O 1.21285 * 119.99696 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00083 * 359.95440 * 14 13 12 17 17 C 1.50696 * 109.47076 * 179.97438 * 16 14 13 18 18 N 1.28736 * 121.08846 * 269.72077 * 17 16 14 19 19 S 1.69384 * 108.98365 * 179.90156 * 18 17 16 20 20 C 1.76507 * 96.12501 * 0.31439 * 19 18 17 21 21 C 1.38788 * 133.55887 * 179.78224 * 20 19 18 22 22 C 1.36709 * 119.75698 * 180.02562 * 21 20 19 23 23 C 1.38972 * 120.15612 * 359.97438 * 22 21 20 24 24 C 1.36046 * 121.15665 * 0.02621 * 23 22 21 25 25 C 1.40814 * 105.51837 * 359.82553 * 20 19 18 26 26 C 1.47428 * 108.70405 * 1.06261 * 13 12 11 27 27 H 0.96996 * 119.99879 * 0.02562 * 1 2 3 28 28 H 0.96705 * 113.99788 * 303.87722 * 10 9 7 29 29 H 1.09000 * 110.71794 * 324.77317 * 11 9 7 30 30 H 1.08995 * 110.71960 * 88.04991 * 11 9 7 31 31 H 1.09002 * 109.87959 * 262.77405 * 12 11 9 32 32 H 1.09003 * 110.00846 * 141.68151 * 12 11 9 33 33 H 1.08993 * 109.47615 * 300.00471 * 16 14 13 34 34 H 1.09003 * 109.46601 * 60.00490 * 16 14 13 35 35 H 1.08002 * 120.11500 * 0.02562 * 21 20 19 36 36 H 1.08003 * 119.92667 * 180.02562 * 22 21 20 37 37 H 1.07994 * 119.42638 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.89366 * 180.02562 * 24 23 22 39 39 H 1.09003 * 110.36539 * 217.03225 * 26 13 12 40 40 H 1.08994 * 110.36519 * 94.71161 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4057 -2.5993 -1.1483 11 6 0.4352 -2.6713 1.3079 12 6 0.3278 -4.2043 1.4490 13 7 1.4282 -4.7924 0.6716 14 6 1.6692 -6.1103 0.5242 15 8 2.6102 -6.4837 -0.1437 16 6 0.7697 -7.1198 1.1897 17 6 1.2524 -8.5109 0.8693 18 7 0.8182 -9.1437 -0.1643 19 16 1.5593 -10.6654 -0.2303 20 6 2.5247 -10.4684 1.2342 21 6 3.4285 -11.2839 1.9007 22 6 4.0308 -10.8369 3.0437 23 6 3.7400 -9.5705 3.5367 24 6 2.8577 -8.7531 2.9008 25 6 2.2164 -9.1826 1.7185 26 6 2.2241 -3.7019 0.0791 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2206 -1.8683 -1.2405 29 1 0.9702 -2.2425 2.1552 30 1 -0.5533 -2.2230 1.2077 31 1 -0.6290 -4.5467 1.0548 32 1 0.4203 -4.4897 2.4969 33 1 0.7885 -6.9677 2.2688 34 1 -0.2493 -6.9958 0.8230 35 1 3.6551 -12.2680 1.5178 36 1 4.7348 -11.4691 3.5644 37 1 4.2230 -9.2291 4.4403 38 1 2.6472 -7.7726 3.3017 39 1 2.5658 -3.9801 -0.9179 40 1 3.0732 -3.4614 0.7187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:31 Heat of formation + Delta-G solvation = -31.391361 kcal Electronic energy + Delta-G solvation = -25536.380960 eV Core-core repulsion = 21828.223160 eV Total energy + Delta-G solvation = -3708.157800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34203 -39.34228 -37.51249 -36.57694 -34.35287 -32.21605 -31.64492 -30.76892 -30.56754 -29.36781 -28.18797 -25.21149 -23.72757 -23.09866 -22.38662 -20.69327 -19.68949 -18.69145 -18.68811 -17.30959 -16.80087 -16.56731 -15.73374 -15.44590 -15.31785 -15.01009 -14.88219 -14.49457 -14.20228 -13.99832 -13.71381 -13.47200 -13.04954 -12.62515 -12.34777 -12.26379 -12.07943 -11.93008 -11.83268 -11.64847 -11.38455 -11.36044 -10.94454 -10.92997 -10.65135 -10.60014 -10.51607 -10.08700 -10.04043 -9.53592 -9.41007 -9.16026 -8.72578 -8.26617 -8.06080 -8.00589 -6.33570 -4.41850 0.33848 0.95331 1.29852 1.68652 1.95173 2.95942 3.17443 3.25056 3.27523 3.33804 3.56169 4.11265 4.23041 4.29492 4.62626 4.74773 4.87695 4.96872 5.00830 5.08703 5.10901 5.23477 5.44407 5.50421 5.61647 5.67973 5.80122 5.83262 5.94231 5.96451 6.12795 6.22482 6.39191 6.43947 6.56029 6.60045 6.83206 6.90596 7.26293 7.29125 7.69102 7.94426 8.03955 8.52311 8.61326 9.27111 9.39671 10.73792 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.002674 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.238932 B =10467.504371 C =10972.747966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.137 4.137 12 C 0.096 3.904 13 N -0.604 5.604 14 C 0.531 3.469 15 O -0.545 6.545 16 C -0.077 4.077 17 C 0.186 3.814 18 N -0.427 5.427 19 S 0.181 5.819 20 C -0.134 4.134 21 C -0.083 4.083 22 C -0.084 4.084 23 C -0.125 4.125 24 C -0.046 4.046 25 C -0.119 4.119 26 C 0.121 3.879 27 H 0.269 0.731 28 H 0.384 0.616 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.071 0.929 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 -17.945 9.938 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.176 4.176 12 C -0.027 4.027 13 N -0.337 5.337 14 C 0.316 3.684 15 O -0.423 6.423 16 C -0.121 4.121 17 C -0.005 4.005 18 N -0.238 5.238 19 S 0.336 5.664 20 C -0.254 4.254 21 C -0.106 4.106 22 C -0.107 4.107 23 C -0.146 4.146 24 C -0.068 4.068 25 C -0.130 4.130 26 C -0.001 4.001 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.680 -19.512 7.468 20.959 hybrid contribution 0.679 2.262 1.545 2.822 sum 2.359 -17.250 9.013 19.605 Atomic orbital electron populations 1.69647 1.05961 1.27756 1.50189 1.24996 0.95032 0.99566 0.93420 0.86405 0.79795 0.82326 0.78400 1.20385 1.21033 1.19684 1.21459 0.93789 0.90139 1.52072 0.91651 1.19599 0.86487 0.90746 0.82427 1.86126 1.53890 1.51862 1.47415 1.23179 1.03253 0.89845 1.01288 1.22241 0.89343 0.97232 0.93860 1.48559 1.30319 1.04602 1.50202 1.19610 0.85349 0.81788 0.81614 1.90711 1.31344 1.79187 1.41075 1.20488 1.01502 0.87085 1.03053 1.21873 0.92680 0.96070 0.89851 1.75748 1.23977 1.04038 1.20044 1.84745 1.38782 1.18505 1.24332 1.23502 1.02928 0.98072 1.00917 1.19968 0.95860 0.99227 0.95520 1.21036 0.98362 0.96035 0.95232 1.20759 0.98619 0.94365 1.00811 1.20714 0.94336 0.99547 0.92201 1.20114 1.00573 0.93649 0.98709 1.22400 0.94114 0.85510 0.98033 0.92103 0.76521 0.91273 0.89589 0.92180 0.92635 0.86720 0.86457 0.84973 0.84794 0.84964 0.85007 0.91099 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.48 10.74 55.43 0.60 -21.89 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -13.61 8.26 -34.44 -0.28 -13.89 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 9 C 0.25 5.83 0.89 -89.62 -0.08 5.75 16 10 O -0.58 -14.74 13.19 -35.23 -0.46 -15.20 16 11 C -0.14 -2.79 5.51 -24.90 -0.14 -2.93 16 12 C 0.10 1.61 6.49 -3.07 -0.02 1.59 16 13 N -0.60 -11.50 3.33 -170.52 -0.57 -12.07 16 14 C 0.53 9.82 7.84 -10.98 -0.09 9.74 16 15 O -0.54 -12.16 16.29 5.55 0.09 -12.07 16 16 C -0.08 -1.06 5.17 -29.04 -0.15 -1.21 16 17 C 0.19 2.82 5.37 -81.23 -0.44 2.39 16 18 N -0.43 -7.06 11.84 34.00 0.40 -6.66 16 19 S 0.18 2.49 23.86 -107.50 -2.56 -0.07 16 20 C -0.13 -1.71 6.71 -38.40 -0.26 -1.97 16 21 C -0.08 -0.80 10.02 -39.93 -0.40 -1.20 16 22 C -0.08 -0.68 10.00 -39.86 -0.40 -1.08 16 23 C -0.13 -1.09 9.92 -40.10 -0.40 -1.49 16 24 C -0.05 -0.50 9.72 -39.25 -0.38 -0.88 16 25 C -0.12 -1.61 6.04 -105.14 -0.64 -2.25 16 26 C 0.12 2.65 6.08 -2.53 -0.02 2.63 16 27 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 28 H 0.38 9.72 7.18 45.56 0.33 10.05 16 29 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 30 H 0.09 1.84 7.69 -51.93 -0.40 1.45 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.17 7.54 -51.93 -0.39 0.78 16 34 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.21 7.64 -52.48 -0.40 0.81 16 39 H 0.07 1.69 8.04 -51.93 -0.42 1.27 16 40 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.95 352.25 -10.19 -41.14 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.20 Total: 9.86 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.77 Total: -3.09 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.43 Total: -40.62 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.37 Total: -27.27 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.56 Total: -0.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.95 -10.19 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.750 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds