Wall clock time and date at job start Tue Mar 31 2020 16:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99710 * 2 1 4 4 H 1.48498 * 109.47212 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47044 * 30.00347 * 3 2 1 6 6 H 1.48501 * 109.46596 * 149.99954 * 3 2 1 7 7 C 1.37879 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.88489 * 59.30585 * 9 7 2 11 11 C 1.55157 * 111.03921 * 295.40038 * 9 7 2 12 12 C 1.54326 * 102.93823 * 206.41183 * 11 9 7 13 13 N 1.47013 * 107.27435 * 22.19004 * 12 11 9 14 14 C 1.34778 * 125.64773 * 181.09631 * 13 12 11 15 15 O 1.21285 * 119.99696 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00083 * 359.95440 * 14 13 12 17 17 C 1.50696 * 109.47076 * 179.97438 * 16 14 13 18 18 N 1.28736 * 121.08846 * 269.72077 * 17 16 14 19 19 S 1.69384 * 108.98365 * 179.90156 * 18 17 16 20 20 C 1.76507 * 96.12501 * 0.31439 * 19 18 17 21 21 C 1.38788 * 133.55887 * 179.78224 * 20 19 18 22 22 C 1.36709 * 119.75698 * 180.02562 * 21 20 19 23 23 C 1.38972 * 120.15612 * 359.97438 * 22 21 20 24 24 C 1.36046 * 121.15665 * 0.02621 * 23 22 21 25 25 C 1.40814 * 105.51837 * 359.82553 * 20 19 18 26 26 C 1.47428 * 108.70405 * 1.06261 * 13 12 11 27 27 H 0.96996 * 119.99879 * 0.02562 * 1 2 3 28 28 H 0.96705 * 113.99788 * 303.87722 * 10 9 7 29 29 H 1.09000 * 110.71794 * 324.77317 * 11 9 7 30 30 H 1.08995 * 110.71960 * 88.04991 * 11 9 7 31 31 H 1.09002 * 109.87959 * 262.77405 * 12 11 9 32 32 H 1.09003 * 110.00846 * 141.68151 * 12 11 9 33 33 H 1.08993 * 109.47615 * 300.00471 * 16 14 13 34 34 H 1.09003 * 109.46601 * 60.00490 * 16 14 13 35 35 H 1.08002 * 120.11500 * 0.02562 * 21 20 19 36 36 H 1.08003 * 119.92667 * 180.02562 * 22 21 20 37 37 H 1.07994 * 119.42638 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.89366 * 180.02562 * 24 23 22 39 39 H 1.09003 * 110.36539 * 217.03225 * 26 13 12 40 40 H 1.08994 * 110.36519 * 94.71161 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4057 -2.5993 -1.1483 11 6 0.4352 -2.6713 1.3079 12 6 0.3278 -4.2043 1.4490 13 7 1.4282 -4.7924 0.6716 14 6 1.6692 -6.1103 0.5242 15 8 2.6102 -6.4837 -0.1437 16 6 0.7697 -7.1198 1.1897 17 6 1.2524 -8.5109 0.8693 18 7 0.8182 -9.1437 -0.1643 19 16 1.5593 -10.6654 -0.2303 20 6 2.5247 -10.4684 1.2342 21 6 3.4285 -11.2839 1.9007 22 6 4.0308 -10.8369 3.0437 23 6 3.7400 -9.5705 3.5367 24 6 2.8577 -8.7531 2.9008 25 6 2.2164 -9.1826 1.7185 26 6 2.2241 -3.7019 0.0791 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2206 -1.8683 -1.2405 29 1 0.9702 -2.2425 2.1552 30 1 -0.5533 -2.2230 1.2077 31 1 -0.6290 -4.5467 1.0548 32 1 0.4203 -4.4897 2.4969 33 1 0.7885 -6.9677 2.2688 34 1 -0.2493 -6.9958 0.8230 35 1 3.6551 -12.2680 1.5178 36 1 4.7348 -11.4691 3.5644 37 1 4.2230 -9.2291 4.4403 38 1 2.6472 -7.7726 3.3017 39 1 2.5658 -3.9801 -0.9179 40 1 3.0732 -3.4614 0.7187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:31 Heat of formation + Delta-G solvation = -51.915607 kcal Electronic energy + Delta-G solvation = -25537.270958 eV Core-core repulsion = 21828.223160 eV Total energy + Delta-G solvation = -3709.047798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46587 -40.60162 -39.02698 -37.67089 -36.10772 -34.16807 -32.63119 -31.92066 -31.47373 -30.79095 -29.81605 -26.99000 -24.71939 -24.03099 -23.66543 -21.93374 -21.32878 -20.07249 -19.56937 -19.14889 -18.27609 -17.43493 -17.01766 -16.86359 -16.73195 -16.19510 -16.04961 -15.98480 -15.45470 -15.14605 -14.91319 -14.78583 -14.41201 -14.08921 -13.78488 -13.59671 -13.30764 -13.20363 -13.08644 -13.01869 -12.88784 -12.64113 -12.60657 -12.44941 -12.25285 -11.84465 -11.79044 -11.63126 -11.28220 -11.11217 -10.80094 -10.63402 -10.14641 -9.97744 -9.59873 -8.95689 -8.24175 -6.39016 -0.54417 0.19395 0.36079 0.68039 0.98802 1.42677 1.46403 1.53077 1.55082 2.06721 2.40656 2.65118 3.00875 3.16176 3.41968 3.56127 3.82355 3.90412 4.02291 4.04362 4.16043 4.26673 4.36571 4.37226 4.42470 4.44498 4.59572 4.61859 4.74340 4.90188 4.92562 5.03357 5.19757 5.25701 5.26463 5.41683 5.47124 5.52623 5.57389 5.78646 5.84173 6.06684 6.56268 6.65247 7.06620 7.32093 7.42561 8.81655 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.002674 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.238932 B =10467.504371 C =10972.747966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.037 3.963 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.232 3.768 10 O -0.597 6.597 11 C -0.128 4.128 12 C 0.101 3.899 13 N -0.606 5.606 14 C 0.529 3.471 15 O -0.590 6.590 16 C -0.067 4.067 17 C 0.177 3.823 18 N -0.473 5.473 19 S 0.161 5.839 20 C -0.148 4.148 21 C -0.092 4.092 22 C -0.070 4.070 23 C -0.120 4.120 24 C -0.059 4.059 25 C -0.148 4.148 26 C 0.126 3.874 27 H 0.272 0.728 28 H 0.380 0.620 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.039 0.961 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -18.786 13.089 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.192 3.808 10 O -0.406 6.406 11 C -0.166 4.166 12 C -0.021 4.021 13 N -0.338 5.338 14 C 0.317 3.683 15 O -0.471 6.471 16 C -0.111 4.111 17 C -0.012 4.012 18 N -0.284 5.284 19 S 0.317 5.683 20 C -0.268 4.268 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.139 4.139 24 C -0.081 4.081 25 C -0.159 4.159 26 C 0.004 3.996 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.176 0.824 34 H 0.147 0.853 35 H 0.172 0.828 36 H 0.192 0.808 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.057 0.943 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.397 -20.358 10.640 23.096 hybrid contribution 0.554 2.485 0.603 2.617 sum 2.951 -17.873 11.243 21.320 Atomic orbital electron populations 1.69709 1.06613 1.28424 1.49900 1.25598 0.95832 1.01971 0.93043 0.85539 0.78848 0.79126 0.77976 1.20863 1.20234 1.19462 1.21682 0.93621 0.91600 1.53064 0.92643 1.19823 0.87050 0.90687 0.83284 1.86116 1.54064 1.51656 1.48800 1.22960 1.01707 0.92709 0.99251 1.22341 0.89074 0.94328 0.96307 1.48598 1.30467 1.04436 1.50272 1.20367 0.85184 0.81878 0.80845 1.90688 1.33578 1.79806 1.43066 1.20545 1.00426 0.85000 1.05099 1.22222 0.92842 0.96399 0.89779 1.75661 1.25876 1.05475 1.21375 1.84546 1.39822 1.17838 1.26136 1.23735 1.03896 0.98730 1.00416 1.20405 0.95160 0.99958 0.95976 1.21568 0.97476 0.96127 0.94051 1.21252 0.97254 0.94103 1.01336 1.21044 0.94716 1.00772 0.91532 1.20306 1.01455 0.94118 1.00025 1.22147 0.94447 0.86231 0.96807 0.91880 0.77002 0.91303 0.90874 0.90827 0.87844 0.82385 0.85324 0.82775 0.80808 0.81578 0.83500 0.94267 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.50 10.74 21.45 0.23 -45.27 16 2 C 0.04 1.85 5.27 84.65 0.45 2.29 16 3 Si 0.96 40.40 29.54 68.60 2.03 42.43 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.56 -28.90 8.26 25.60 0.21 -28.69 16 8 H 0.06 2.88 7.78 -2.91 -0.02 2.85 16 9 C 0.23 11.02 0.89 -10.15 -0.01 11.02 16 10 O -0.60 -30.91 13.19 -148.98 -1.96 -32.87 16 11 C -0.13 -5.08 5.51 31.78 0.18 -4.91 16 12 C 0.10 3.13 6.49 86.73 0.56 3.70 16 13 N -0.61 -22.53 3.33 -811.80 -2.70 -25.23 16 14 C 0.53 19.28 7.84 87.66 0.69 19.97 16 15 O -0.59 -26.90 16.29 -3.04 -0.05 -26.95 16 16 C -0.07 -1.74 5.17 29.10 0.15 -1.59 16 17 C 0.18 5.34 5.37 44.74 0.24 5.58 16 18 N -0.47 -16.07 11.84 -46.34 -0.55 -16.62 16 19 S 0.16 4.59 23.86 -56.49 -1.35 3.24 16 20 C -0.15 -3.66 6.71 23.03 0.15 -3.50 16 21 C -0.09 -1.56 10.02 22.04 0.22 -1.34 16 22 C -0.07 -0.83 10.00 22.09 0.22 -0.61 16 23 C -0.12 -1.58 9.92 21.94 0.22 -1.36 16 24 C -0.06 -1.11 9.72 22.49 0.22 -0.89 16 25 C -0.15 -3.85 6.04 -20.20 -0.12 -3.97 16 26 C 0.13 5.64 6.08 86.85 0.53 6.17 16 27 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 28 H 0.38 19.75 7.18 -74.05 -0.53 19.22 16 29 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 30 H 0.07 3.09 7.69 -2.39 -0.02 3.07 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.16 2.64 7.54 -2.39 -0.02 2.62 16 34 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 2.20 7.64 -2.91 -0.02 2.18 16 39 H 0.04 1.95 8.04 -2.39 -0.02 1.94 16 40 H 0.08 3.31 8.03 -2.39 -0.02 3.29 16 Total: -1.00 -70.89 352.25 0.10 -70.79 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.55 Total: 28.61 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 3.90 Total: 1.87 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.02 Total: -87.12 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -2.01 Total: -59.82 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.35 Total: 3.24 kcal Total: -70.89 0.10 -70.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.873 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds