Wall clock time and date at job start Tue Mar 31 2020 16:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48508 * 109.46871 * 269.99422 * 3 2 1 5 5 H 1.48494 * 109.47299 * 29.99455 * 3 2 1 6 6 H 1.48500 * 109.47033 * 149.99911 * 3 2 1 7 7 C 1.37878 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99998 * 359.72763 * 7 2 1 10 10 H 1.09005 * 109.46998 * 300.27470 * 9 7 2 11 11 N 1.46491 * 109.47228 * 180.27692 * 9 7 2 12 12 C 1.34777 * 120.00534 * 155.00336 * 11 9 7 13 13 O 1.21593 * 119.99580 * 354.86418 * 12 11 9 14 14 N 1.34773 * 120.00568 * 174.86925 * 12 11 9 15 15 C 1.47153 * 120.98319 * 4.97719 * 14 12 11 16 16 C 1.53289 * 108.38680 * 230.51994 * 15 14 12 17 17 O 1.42962 * 109.22305 * 307.69486 * 16 15 14 18 18 C 1.42969 * 114.16665 * 62.58226 * 17 16 15 19 19 H 1.09004 * 109.50513 * 57.39459 * 18 17 16 20 20 C 1.52995 * 109.51388 * 177.49435 * 18 17 16 21 21 F 1.39904 * 109.47148 * 300.00047 * 20 18 17 22 22 F 1.39901 * 109.47160 * 60.00249 * 20 18 17 23 23 C 1.47155 * 120.98438 * 184.70515 * 14 12 11 24 24 C 1.52999 * 109.46994 * 60.27279 * 9 7 2 25 25 F 1.39897 * 109.47077 * 60.00086 * 24 9 7 26 26 F 1.39898 * 109.46984 * 180.02562 * 24 9 7 27 27 F 1.39894 * 109.47296 * 300.00005 * 24 9 7 28 28 H 0.96996 * 119.99833 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00190 * 334.99519 * 11 9 7 30 30 H 1.09002 * 109.67894 * 350.24853 * 15 14 12 31 31 H 1.09002 * 109.67968 * 110.75388 * 15 14 12 32 32 H 1.08993 * 109.51662 * 67.62056 * 16 15 14 33 33 H 1.09003 * 109.51177 * 187.72816 * 16 15 14 34 34 H 1.08996 * 109.46800 * 180.02562 * 20 18 17 35 35 H 1.09000 * 109.68088 * 249.21048 * 23 14 12 36 36 H 1.09009 * 109.67892 * 9.75597 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0073 10 1 0.6243 -2.5523 0.8976 11 7 2.2030 -3.6126 0.0132 12 6 1.8369 -4.8097 0.5127 13 8 0.7504 -4.9407 1.0428 14 7 2.6749 -5.8615 0.4246 15 6 4.0353 -5.7032 -0.1135 16 6 4.2567 -6.7716 -1.1902 17 8 3.9322 -8.0559 -0.6527 18 6 2.5647 -8.1976 -0.2602 19 1 1.9181 -7.9952 -1.1142 20 6 2.3212 -9.6234 0.2385 21 9 2.6082 -10.5313 -0.7865 22 9 3.1499 -9.8815 1.3357 23 6 2.2586 -7.2011 0.8693 24 6 0.3714 -2.5867 -1.2415 25 9 1.1757 -2.5185 -2.3841 26 9 -0.3285 -3.7980 -1.2349 27 9 -0.5377 -1.5234 -1.2471 28 1 -0.4850 0.8400 -0.0004 29 1 3.0969 -3.4884 -0.3425 30 1 4.1432 -4.7114 -0.5526 31 1 4.7639 -5.8314 0.6870 32 1 3.6163 -6.5632 -2.0471 33 1 5.3004 -6.7609 -1.5045 34 1 1.2785 -9.7307 0.5370 35 1 2.8113 -7.4782 1.7670 36 1 1.1893 -7.2017 1.0812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932890607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:45 Heat of formation + Delta-G solvation = -296.032840 kcal Electronic energy + Delta-G solvation = -30620.472105 eV Core-core repulsion = 25361.999448 eV Total energy + Delta-G solvation = -5258.472656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.10748 -48.41837 -47.13453 -46.07771 -45.67572 -40.33608 -38.45921 -34.95429 -34.62985 -32.90198 -32.22726 -28.92137 -28.21722 -25.77047 -24.60786 -23.65919 -22.13687 -21.18878 -19.61096 -18.62078 -17.99477 -17.42370 -17.09920 -16.96949 -16.85013 -16.69627 -16.16268 -15.87463 -15.53206 -15.10633 -14.97947 -14.77114 -14.49377 -13.98617 -13.73286 -13.53857 -13.43529 -13.12492 -12.99993 -12.79810 -12.56610 -12.47544 -12.41442 -12.23328 -12.00738 -11.89356 -11.76068 -11.29247 -11.21764 -10.95341 -10.92288 -10.84499 -10.45482 -10.40197 -9.71560 -9.67911 -8.80698 -8.64441 -8.24765 -6.29403 -4.53800 2.66305 3.05072 3.14944 3.21508 3.23934 3.51483 3.69327 3.97234 4.07895 4.13856 4.24464 4.51190 4.59639 4.70751 4.75870 4.87751 4.93434 5.00376 5.10002 5.35467 5.48713 5.55312 5.69943 5.76704 5.81490 6.12330 6.36842 6.67442 6.72520 7.06151 7.21735 7.48913 7.57649 8.37784 8.46681 8.97874 9.15302 10.62444 Molecular weight = 332.09amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.003468 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.978787 B = 8072.773036 C = 8419.372595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.260 3.740 10 H 0.088 0.912 11 N -0.724 5.724 12 C 0.706 3.294 13 O -0.578 6.578 14 N -0.637 5.637 15 C 0.076 3.924 16 C 0.049 3.951 17 O -0.366 6.366 18 C 0.024 3.976 19 H 0.094 0.906 20 C 0.280 3.720 21 F -0.199 7.199 22 F -0.197 7.197 23 C 0.106 3.894 24 C 0.416 3.584 25 F -0.210 7.210 26 F -0.219 7.219 27 F -0.136 7.136 28 H 0.269 0.731 29 H 0.394 0.606 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.568 -12.982 -1.221 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.154 3.846 10 H 0.105 0.895 11 N -0.378 5.378 12 C 0.408 3.592 13 O -0.455 6.455 14 N -0.377 5.377 15 C -0.048 4.048 16 C -0.028 4.028 17 O -0.284 6.284 18 C -0.037 4.037 19 H 0.112 0.888 20 C 0.226 3.774 21 F -0.180 7.180 22 F -0.178 7.178 23 C -0.018 4.018 24 C 0.360 3.640 25 F -0.192 7.192 26 F -0.201 7.201 27 F -0.117 7.117 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.680 -13.066 -0.834 14.272 hybrid contribution 0.650 1.061 -0.616 1.388 sum 6.330 -12.005 -1.450 13.649 Atomic orbital electron populations 1.70389 1.05867 1.27476 1.43476 1.25074 0.95164 1.00115 0.93970 0.86199 0.79541 0.81577 0.78446 1.20192 1.20746 1.19482 1.20851 0.93745 0.88031 1.56361 0.90514 1.19662 0.88309 0.84907 0.91702 0.89491 1.45422 1.17476 1.09825 1.65069 1.15907 0.83459 0.80471 0.79366 1.90912 1.22003 1.83345 1.49233 1.47180 1.14091 1.07696 1.68777 1.22333 0.84402 1.00417 0.97664 1.23057 1.02341 0.82316 0.95077 1.88001 1.24675 1.33254 1.82469 1.23793 0.86714 0.93799 0.99349 0.88788 1.21895 0.94471 0.85882 0.75197 1.93005 1.95277 1.69365 1.60327 1.93001 1.75550 1.94837 1.54406 1.21986 1.03563 0.80747 0.95510 1.23190 0.80914 0.72756 0.87169 1.92984 1.74420 1.96210 1.55564 1.93058 1.81506 1.48573 1.96964 1.93404 1.68344 1.53765 1.96211 0.92036 0.77018 0.88778 0.90303 0.92028 0.87049 0.85422 0.90080 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.52 9.51 55.43 0.53 -21.99 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.59 29.54 -169.99 -5.02 14.57 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.55 -13.69 8.46 -34.44 -0.29 -13.99 16 8 H 0.08 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.26 6.30 2.22 -69.09 -0.15 6.15 16 10 H 0.09 2.38 7.51 -51.93 -0.39 1.99 16 11 N -0.72 -14.36 4.90 -59.81 -0.29 -14.66 16 12 C 0.71 13.69 7.76 -86.92 -0.67 13.01 16 13 O -0.58 -13.31 14.66 5.28 0.08 -13.23 16 14 N -0.64 -9.34 3.01 -177.74 -0.54 -9.88 16 15 C 0.08 0.84 6.63 -3.54 -0.02 0.82 16 16 C 0.05 0.49 6.98 37.31 0.26 0.75 16 17 O -0.37 -4.34 10.27 -35.23 -0.36 -4.70 16 18 C 0.02 0.26 2.98 -26.37 -0.08 0.18 16 19 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 20 C 0.28 2.64 5.04 37.15 0.19 2.83 16 21 F -0.20 -2.24 17.28 2.25 0.04 -2.20 16 22 F -0.20 -2.21 16.65 2.25 0.04 -2.17 16 23 C 0.11 1.32 5.88 -3.32 -0.02 1.30 16 24 C 0.42 10.39 2.81 37.16 0.10 10.49 16 25 F -0.21 -5.01 16.94 2.25 0.04 -4.97 16 26 F -0.22 -5.41 15.88 2.25 0.04 -5.38 16 27 F -0.14 -3.69 12.93 2.25 0.03 -3.66 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.39 6.68 6.05 -40.82 -0.25 6.44 16 30 H 0.09 0.99 5.66 -51.93 -0.29 0.70 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.95 7.63 -51.93 -0.40 0.55 16 36 H 0.11 1.41 7.12 -51.92 -0.37 1.04 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -31.45 317.59 -4.77 -36.22 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.35 Total: 4.14 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: -0.78 Total: 23.13 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.30 Total: -46.53 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.28 Total: -17.93 kcal Atomic # 9 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.45 -4.77 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932890607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.813 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds