Wall clock time and date at job start Tue Mar 31 2020 16:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.47171 * 2 1 4 4 C 1.34781 * 120.00147 * 270.00331 * 3 2 1 5 5 O 1.21278 * 119.99783 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.99860 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.76200 * 99.99738 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00150 * 0.02562 * 8 7 6 10 10 C 1.38800 * 119.99994 * 179.97438 * 8 7 6 11 11 N 1.31623 * 119.99828 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00164 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47071 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47245 * 120.00149 * 12 10 8 15 15 H 1.48499 * 109.47026 * 240.00521 * 12 10 8 16 16 C 1.46503 * 120.00061 * 89.99910 * 3 2 1 17 17 C 1.53950 * 113.74146 * 141.26191 * 16 3 2 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 3 19 19 C 1.34776 * 134.45584 * 204.64698 * 18 17 16 20 20 O 1.21281 * 120.00225 * 179.86905 * 19 18 17 21 21 C 1.50705 * 120.00221 * 359.86265 * 19 18 17 22 22 S 1.81399 * 109.47331 * 180.02562 * 21 19 18 23 23 C 1.81398 * 102.99921 * 180.02562 * 22 21 19 24 24 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 25 25 H 1.09000 * 109.47125 * 59.99857 * 1 2 3 26 26 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46980 * 299.99890 * 1 2 3 28 28 H 1.09003 * 109.46980 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47125 * 120.00143 * 2 1 3 30 30 H 1.09004 * 109.47346 * 300.00210 * 6 4 3 31 31 H 1.09003 * 109.47069 * 59.99963 * 6 4 3 32 32 H 0.97000 * 120.00297 * 180.02562 * 11 10 8 33 33 H 1.09002 * 112.94232 * 9.66866 * 16 3 2 34 34 H 1.08999 * 113.76704 * 205.15172 * 17 16 3 35 35 H 1.09002 * 113.76463 * 336.53966 * 17 16 3 36 36 H 1.09000 * 109.46504 * 300.00526 * 21 19 18 37 37 H 1.09001 * 109.46554 * 59.99813 * 21 19 18 38 38 H 1.09001 * 109.46823 * 299.99762 * 23 22 21 39 39 H 1.08998 * 109.47323 * 59.99817 * 23 22 21 40 40 H 1.09002 * 109.46791 * 180.02562 * 23 22 21 41 41 H 1.08999 * 113.77186 * 221.15323 * 24 18 17 42 42 H 1.09004 * 113.76624 * 89.74800 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1601 -1.1671 6 6 1.9923 1.3060 -2.4723 7 16 2.3849 2.4148 -3.8480 8 6 2.0127 1.3583 -5.2082 9 1 1.6574 0.3540 -5.0305 10 6 2.1751 1.8171 -6.5081 11 7 2.6076 3.0412 -6.7246 12 14 1.7799 0.6974 -7.9501 13 1 1.3144 -0.6182 -7.4422 14 1 0.7120 1.3140 -8.7775 15 1 2.9986 0.5062 -8.7768 16 6 2.2625 2.0718 1.2687 17 6 3.5145 2.9675 1.2559 18 7 2.6096 4.0506 0.8171 19 6 2.7744 5.1975 0.1286 20 8 1.8213 5.9137 -0.0937 21 6 4.1432 5.5901 -0.3649 22 16 4.0372 7.1712 -1.2477 23 6 5.7525 7.4701 -1.7567 24 6 1.4533 3.3711 1.4329 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.6228 0.4187 -2.5299 31 1 0.9444 1.0114 -2.5302 32 1 2.7208 3.3621 -7.6330 33 1 2.2066 1.4079 2.1315 34 1 3.9484 3.1302 2.2425 35 1 4.2528 2.6798 0.5074 36 1 4.8196 5.6926 0.4836 37 1 4.5204 4.8214 -1.0395 38 1 6.3891 7.5252 -0.8737 39 1 6.0889 6.6546 -2.3969 40 1 5.8101 8.4104 -2.3050 41 1 0.5489 3.4052 0.8255 42 1 1.2805 3.6526 2.4717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:44 Heat of formation + Delta-G solvation = 0.833711 kcal Electronic energy + Delta-G solvation = -25040.457046 eV Core-core repulsion = 21469.140581 eV Total energy + Delta-G solvation = -3571.316464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00134 -38.55992 -36.96981 -35.51809 -32.42164 -31.07334 -30.01699 -29.41189 -28.64274 -27.40542 -26.17631 -25.48182 -23.37969 -22.41546 -19.39001 -18.46980 -17.63334 -17.05558 -16.73492 -16.30372 -16.23975 -15.42695 -15.06787 -14.90453 -14.79942 -14.19760 -13.87965 -13.79235 -13.53583 -13.42293 -13.27116 -13.06314 -12.98503 -12.69268 -12.56168 -12.20226 -12.02112 -11.83876 -11.82433 -11.65145 -11.27223 -11.18525 -11.06270 -11.00482 -10.75390 -9.79873 -9.70078 -9.45114 -9.37873 -9.06618 -8.67423 -8.20751 -8.15277 -7.31829 -6.48099 -6.20510 -3.90909 1.74728 2.78633 2.80804 2.95637 3.04572 3.19622 3.21415 3.24371 3.30539 3.55893 4.20555 4.28047 4.45069 4.75053 4.84312 4.93085 5.08337 5.13622 5.15450 5.20731 5.24694 5.25664 5.29639 5.32502 5.43660 5.46739 5.58120 5.66503 5.68166 5.74133 5.77196 5.84672 5.89555 6.02363 6.04660 6.19968 6.63436 7.45919 7.60195 7.96335 8.35707 8.55759 8.58895 9.24627 10.86645 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009233 B = 0.004880 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.998762 B = 5736.562127 C = 8285.812643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.607 5.607 4 C 0.532 3.468 5 O -0.495 6.495 6 C -0.150 4.150 7 S -0.056 6.056 8 C -0.536 4.536 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.865 5.865 12 Si 0.917 3.083 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.116 3.884 17 C 0.095 3.905 18 N -0.613 5.613 19 C 0.590 3.410 20 O -0.532 6.532 21 C -0.109 4.109 22 S -0.187 6.187 23 C -0.141 4.141 24 C 0.096 3.904 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 -4.655 19.930 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.343 5.343 4 C 0.320 3.680 5 O -0.367 6.367 6 C -0.301 4.301 7 S 0.171 5.829 8 C -0.684 4.684 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.500 5.500 12 Si 0.743 3.257 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.010 3.990 17 C -0.030 4.030 18 N -0.349 5.349 19 C 0.379 3.621 20 O -0.409 6.409 21 C -0.260 4.260 22 S 0.038 5.962 23 C -0.310 4.310 24 C -0.028 4.028 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.979 -1.592 19.333 19.626 hybrid contribution 0.403 -3.042 -0.801 3.172 sum 3.382 -4.634 18.532 19.400 Atomic orbital electron populations 1.22240 0.95908 1.02210 1.02818 1.21560 0.94524 0.81939 1.03287 1.47826 1.67894 1.14183 1.04421 1.20348 0.76775 0.86544 0.84349 1.90693 1.42893 1.16703 1.86413 1.23601 1.04584 1.04443 0.97465 1.85469 1.86632 1.17655 0.93167 1.22885 1.51826 1.01395 0.92300 0.91048 1.24981 0.94707 0.95494 0.98352 1.70027 1.42919 1.15550 1.21548 0.86149 0.78188 0.80095 0.81252 1.19657 1.20552 1.20593 1.22508 0.95788 0.93300 0.87356 1.23497 0.95098 0.84586 0.99779 1.49296 1.10612 1.20669 1.54331 1.18685 0.89046 0.78264 0.76135 1.90703 1.41865 1.51490 1.56805 1.23315 0.99426 1.00213 1.03050 1.87404 1.11051 1.25271 1.72510 1.23494 0.97399 1.05958 1.04119 1.23526 0.92656 0.88571 0.98064 0.91954 0.91587 0.92416 0.89839 0.90500 0.89611 0.89534 0.92240 0.87112 0.89335 0.89616 0.88898 0.86519 0.91114 0.90264 0.88050 0.90071 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.11 0.98 5.96 -4.04 -0.02 0.95 16 3 N -0.61 -7.23 2.73 -167.90 -0.46 -7.69 16 4 C 0.53 9.18 7.18 -10.98 -0.08 9.10 16 5 O -0.49 -9.94 9.07 5.56 0.05 -9.89 16 6 C -0.15 -2.94 4.71 36.00 0.17 -2.77 16 7 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 8 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 9 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 10 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 11 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 12 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.12 1.08 4.72 -70.14 -0.33 0.75 16 17 C 0.09 0.96 7.58 -2.84 -0.02 0.93 16 18 N -0.61 -8.92 2.01 -178.32 -0.36 -9.28 16 19 C 0.59 10.90 5.88 -10.98 -0.06 10.83 16 20 O -0.53 -12.19 16.59 5.56 0.09 -12.10 16 21 C -0.11 -1.76 6.08 36.01 0.22 -1.54 16 22 S -0.19 -3.26 21.52 -107.50 -2.31 -5.57 16 23 C -0.14 -1.76 10.76 101.05 1.09 -0.67 16 24 C 0.10 1.13 8.28 -2.96 -0.02 1.10 16 25 H 0.06 0.72 7.22 -51.93 -0.38 0.34 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.08 0.46 7.96 -51.93 -0.41 0.05 16 30 H 0.09 1.55 7.40 -51.91 -0.38 1.16 16 31 H 0.09 1.64 7.19 -51.92 -0.37 1.26 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.11 0.59 7.97 -51.93 -0.41 0.18 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.99 7.47 -51.93 -0.39 0.61 16 36 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.12 2.00 7.52 -51.92 -0.39 1.61 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -38.05 371.52 -8.80 -46.85 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.42 Total: 0.23 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 1.51 Total: 4.64 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.08 Total: -42.51 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.14 Total: -21.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -4.52 Total: -9.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.05 -8.80 -46.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.683 kcal (2) G-P(sol) polarization free energy of solvation -38.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds