Wall clock time and date at job start Tue Mar 31 2020 16:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21579 * 119.99840 * 359.97438 * 14 13 3 16 16 C 1.47615 * 119.99812 * 179.97438 * 14 13 3 17 17 C 1.40281 * 120.49451 * 179.97438 * 16 14 13 18 18 C 1.37954 * 118.35770 * 180.02562 * 17 16 14 19 19 C 1.39173 * 119.26358 * 0.02562 * 18 17 16 20 20 O 1.35499 * 119.52654 * 179.97438 * 19 18 17 21 21 C 1.42894 * 116.99734 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47132 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47288 * 60.00133 * 22 21 20 24 24 F 1.39897 * 109.47547 * 179.97438 * 22 21 20 25 25 F 1.39901 * 109.47262 * 300.00161 * 22 21 20 26 26 N 1.32403 * 120.94451 * 0.02562 * 19 18 17 27 27 C 1.31668 * 121.80042 * 359.69761 * 26 19 18 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 1.08002 * 120.82623 * 359.97438 * 17 16 14 36 36 H 1.08008 * 120.37442 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47392 * 299.99842 * 21 20 19 38 38 H 1.09003 * 109.47426 * 60.00242 * 21 20 19 39 39 H 1.08004 * 119.68605 * 180.29628 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3415 2.6318 -0.4322 16 6 0.0449 3.3247 -2.6283 17 6 -1.2197 3.9176 -2.7598 18 6 -1.5385 4.5221 -3.9581 19 6 -0.6038 4.5238 -4.9891 20 8 -0.9115 5.1156 -6.1686 21 6 0.0875 5.0853 -7.1897 22 6 -0.4372 5.7977 -8.4379 23 9 -0.7420 7.1263 -8.1231 24 9 0.5411 5.7686 -9.4376 25 9 -1.5903 5.1503 -8.8943 26 7 0.5816 3.9546 -4.8344 27 6 0.9292 3.3713 -3.7063 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0608 2.9500 34 1 2.2720 2.1231 -1.9978 35 1 -1.9265 3.9005 -1.9433 36 1 -2.5029 4.9889 -4.0947 37 1 0.9858 5.5901 -6.8344 38 1 0.3254 4.0501 -7.4348 39 1 1.9070 2.9216 -3.6158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183917898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:14 Heat of formation + Delta-G solvation = -193.629883 kcal Electronic energy + Delta-G solvation = -27789.248181 eV Core-core repulsion = 23089.445580 eV Total energy + Delta-G solvation = -4699.802601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.54629 -48.09863 -48.00173 -41.05805 -39.34218 -37.96924 -35.18660 -32.81894 -32.59003 -31.77400 -30.89153 -29.61267 -27.02946 -24.57518 -24.37385 -23.25606 -22.76079 -20.72826 -19.61205 -19.45610 -19.08556 -18.36933 -18.35223 -17.80476 -16.69564 -16.54598 -15.98819 -15.29857 -15.02843 -14.90730 -14.88346 -14.68154 -14.45596 -14.37928 -14.17355 -14.16661 -13.99443 -13.78469 -13.63896 -13.16155 -12.89378 -12.66621 -12.20656 -12.16705 -11.75532 -11.53777 -11.30894 -11.03241 -10.89721 -10.39115 -10.25823 -10.14354 -10.10038 -9.69076 -9.22809 -9.11454 -8.82243 -8.56033 -7.94169 -6.18171 -4.28052 0.62113 0.98936 1.74429 2.56297 3.09776 3.21093 3.26876 3.28324 3.29488 3.52515 3.76902 3.87495 3.94628 3.95154 4.31173 4.55079 4.61817 4.69352 4.77135 4.91499 5.13482 5.24861 5.37897 5.61080 6.02885 6.05491 6.33858 6.39968 6.59612 6.64488 6.97873 7.12757 7.26866 7.33515 7.43205 7.54667 7.64804 7.82386 8.10983 8.52222 8.68935 8.96804 9.39264 10.87142 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002356 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.418338 B =11879.192212 C =12855.893355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.549 3.451 15 O -0.541 6.541 16 C -0.201 4.201 17 C 0.013 3.987 18 C -0.187 4.187 19 C 0.328 3.672 20 O -0.292 6.292 21 C 0.026 3.974 22 C 0.463 3.537 23 F -0.175 7.175 24 F -0.171 7.171 25 F -0.175 7.175 26 N -0.543 5.543 27 C 0.173 3.827 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 8.504 -18.556 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.334 3.666 15 O -0.421 6.421 16 C -0.207 4.207 17 C -0.013 4.013 18 C -0.207 4.207 19 C 0.149 3.851 20 O -0.199 6.199 21 C -0.051 4.051 22 C 0.409 3.591 23 F -0.156 7.156 24 F -0.152 7.152 25 F -0.156 7.156 26 N -0.266 5.266 27 C 0.016 3.984 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.352 8.529 -18.487 21.646 hybrid contribution 0.910 0.002 0.070 0.913 sum -6.442 8.531 -18.417 21.295 Atomic orbital electron populations 1.21848 0.98324 0.98157 1.01195 1.21944 0.92636 0.99663 1.02437 1.18853 0.94366 0.89243 0.80630 0.93037 1.21206 0.90560 1.39288 1.06428 0.92023 1.24880 0.98656 0.94706 0.95355 1.69893 1.35195 1.37434 1.09308 0.86451 0.84752 0.77686 0.78242 1.20552 1.21056 1.19807 1.46481 1.14123 1.55376 1.18738 1.17778 0.83191 0.79398 0.86264 1.90765 1.51452 1.60160 1.39691 1.21286 0.96755 1.05286 0.97385 1.21602 0.94925 0.88801 0.95988 1.21005 1.01162 1.06539 0.92020 1.19812 0.90135 0.90144 0.84962 1.86146 1.40343 1.72998 1.20429 1.23624 0.92440 1.04185 0.84865 1.20111 0.75948 0.77851 0.85228 1.93236 1.93234 1.36428 1.92717 1.93233 1.62566 1.96361 1.63070 1.93236 1.50980 1.81058 1.90344 1.67226 1.17471 1.14764 1.27189 1.22703 0.98753 0.91122 0.85810 0.95766 0.93077 0.94361 0.94929 0.88157 0.92486 0.77989 0.82465 0.83312 0.86673 0.86675 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.43 2.24 -69.08 -0.15 6.27 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.87 11.30 55.43 0.63 -23.25 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.70 -13.38 4.97 -55.95 -0.28 -13.66 16 14 C 0.55 10.08 6.34 -12.43 -0.08 10.01 16 15 O -0.54 -11.69 13.55 5.30 0.07 -11.62 16 16 C -0.20 -2.86 5.89 -104.83 -0.62 -3.48 16 17 C 0.01 0.16 9.70 -38.92 -0.38 -0.22 16 18 C -0.19 -1.99 10.02 -39.34 -0.39 -2.39 16 19 C 0.33 3.71 7.49 -16.96 -0.13 3.59 16 20 O -0.29 -2.98 9.99 -18.19 -0.18 -3.16 16 21 C 0.03 0.21 5.26 37.16 0.20 0.40 16 22 C 0.46 3.79 3.32 37.16 0.12 3.92 16 23 F -0.17 -1.63 17.26 2.25 0.04 -1.60 16 24 F -0.17 -1.37 17.32 2.25 0.04 -1.33 16 25 F -0.17 -1.63 17.26 2.25 0.04 -1.59 16 26 N -0.54 -6.40 9.18 -12.97 -0.12 -6.52 16 27 C 0.17 2.13 10.71 -17.15 -0.18 1.95 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 30 H 0.04 0.79 5.64 -51.93 -0.29 0.49 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 34 H 0.39 6.26 6.59 -40.82 -0.27 6.00 16 35 H 0.16 1.85 7.73 -52.49 -0.41 1.44 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.12 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.12 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.17 1.76 6.41 -52.48 -0.34 1.43 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -29.28 344.97 -5.49 -34.77 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.06 Total: 5.67 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.84 Total: 2.18 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.23 Total: -43.43 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.11 Total: -14.78 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.12 Total: -4.52 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.28 -5.49 -34.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183917898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.861 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds