Wall clock time and date at job start Tue Mar 31 2020 16:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21579 * 119.99840 * 359.97438 * 14 13 3 16 16 C 1.47615 * 119.99812 * 179.97438 * 14 13 3 17 17 C 1.40281 * 120.49451 * 179.97438 * 16 14 13 18 18 C 1.37954 * 118.35770 * 180.02562 * 17 16 14 19 19 C 1.39173 * 119.26358 * 0.02562 * 18 17 16 20 20 O 1.35499 * 119.52654 * 179.97438 * 19 18 17 21 21 C 1.42894 * 116.99734 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47132 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47288 * 60.00133 * 22 21 20 24 24 F 1.39897 * 109.47547 * 179.97438 * 22 21 20 25 25 F 1.39901 * 109.47262 * 300.00161 * 22 21 20 26 26 N 1.32403 * 120.94451 * 0.02562 * 19 18 17 27 27 C 1.31668 * 121.80042 * 359.69761 * 26 19 18 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 35 35 H 1.08002 * 120.82623 * 359.97438 * 17 16 14 36 36 H 1.08008 * 120.37442 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47392 * 299.99842 * 21 20 19 38 38 H 1.09003 * 109.47426 * 60.00242 * 21 20 19 39 39 H 1.08004 * 119.68605 * 180.29628 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3415 2.6318 -0.4322 16 6 0.0449 3.3247 -2.6283 17 6 -1.2197 3.9176 -2.7598 18 6 -1.5385 4.5221 -3.9581 19 6 -0.6038 4.5238 -4.9891 20 8 -0.9115 5.1156 -6.1686 21 6 0.0875 5.0853 -7.1897 22 6 -0.4372 5.7977 -8.4379 23 9 -0.7420 7.1263 -8.1231 24 9 0.5411 5.7686 -9.4376 25 9 -1.5903 5.1503 -8.8943 26 7 0.5816 3.9546 -4.8344 27 6 0.9292 3.3713 -3.7063 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0608 2.9500 34 1 2.2720 2.1231 -1.9978 35 1 -1.9265 3.9005 -1.9433 36 1 -2.5029 4.9889 -4.0947 37 1 0.9858 5.5901 -6.8344 38 1 0.3254 4.0501 -7.4348 39 1 1.9070 2.9216 -3.6158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183917898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:14 Heat of formation + Delta-G solvation = -212.992182 kcal Electronic energy + Delta-G solvation = -27790.087793 eV Core-core repulsion = 23089.445580 eV Total energy + Delta-G solvation = -4700.642214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.21715 -48.75834 -48.69809 -42.01379 -40.64884 -39.01818 -36.93057 -34.40749 -33.66516 -33.20975 -32.12440 -30.59274 -28.82810 -25.68285 -25.33246 -24.73770 -23.78308 -22.22286 -21.25385 -20.27684 -19.75841 -19.48616 -19.12432 -18.94996 -17.75679 -17.64999 -17.32100 -16.93384 -16.27960 -16.16918 -15.76430 -15.60549 -15.56944 -15.13425 -15.09949 -14.86446 -14.84890 -14.81252 -14.60998 -14.56171 -14.30695 -13.88640 -13.74097 -13.45304 -13.14328 -12.86990 -12.86208 -12.67793 -12.52394 -12.14740 -12.03851 -11.56175 -11.16572 -11.08676 -11.03475 -10.65760 -10.49099 -9.85454 -9.56784 -8.13980 -6.30789 -0.39021 0.07233 1.02438 1.47241 1.48088 1.57986 1.85772 1.91305 2.34800 2.57931 2.62716 2.76673 2.88923 2.92578 3.16310 3.23711 3.68165 3.81499 3.95770 3.95823 4.07175 4.11189 4.51796 4.52890 4.60450 4.67038 4.78877 5.04176 5.11606 5.13742 5.30342 5.46104 5.57285 5.62648 5.77962 5.82409 5.93433 6.19197 6.49566 6.76768 6.94709 7.34783 7.53018 8.91319 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002356 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.418338 B =11879.192212 C =12855.893355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.551 3.449 15 O -0.581 6.581 16 C -0.221 4.221 17 C 0.013 3.987 18 C -0.179 4.179 19 C 0.332 3.668 20 O -0.295 6.295 21 C 0.024 3.976 22 C 0.468 3.532 23 F -0.182 7.182 24 F -0.169 7.169 25 F -0.182 7.182 26 N -0.544 5.544 27 C 0.183 3.817 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 9.071 -20.919 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.346 5.346 14 C 0.338 3.662 15 O -0.462 6.462 16 C -0.227 4.227 17 C -0.013 4.013 18 C -0.199 4.199 19 C 0.154 3.846 20 O -0.202 6.202 21 C -0.053 4.053 22 C 0.414 3.586 23 F -0.163 7.163 24 F -0.150 7.150 25 F -0.163 7.163 26 N -0.267 5.267 27 C 0.026 3.974 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.788 9.117 -20.911 23.800 hybrid contribution 0.661 -0.090 0.696 0.964 sum -6.126 9.027 -20.215 22.971 Atomic orbital electron populations 1.21686 0.96979 0.99154 1.00316 1.21795 0.93760 0.99107 1.01427 1.18407 0.93703 0.89203 0.81126 0.97998 1.21580 0.91375 1.38839 1.06711 0.90780 1.25731 1.03064 0.94445 0.95117 1.70047 1.36988 1.38387 1.09857 0.85416 0.79430 0.77272 0.78648 1.20612 1.21221 1.18295 1.46186 1.15102 1.55574 1.17788 1.18300 0.82174 0.78488 0.87241 1.90743 1.52422 1.61532 1.41553 1.20906 0.98377 1.07398 0.96034 1.21670 0.94248 0.88552 0.96794 1.21205 1.02114 1.05674 0.90917 1.20026 0.89965 0.89258 0.85377 1.86135 1.41138 1.72521 1.20377 1.23820 0.92214 1.05202 0.84049 1.20106 0.75686 0.77451 0.85349 1.93225 1.93302 1.37039 1.92772 1.93240 1.62413 1.96323 1.63022 1.93225 1.51467 1.81150 1.90466 1.67300 1.17797 1.14963 1.26634 1.22854 0.98890 0.90455 0.85215 0.93695 0.95400 0.93732 0.93893 0.90987 0.92653 0.76136 0.82401 0.80670 0.85372 0.85305 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 3 C 0.28 13.58 2.24 44.25 0.10 13.68 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.11 16 5 C -0.55 -27.57 8.73 25.60 0.22 -27.35 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.91 -50.89 11.30 21.45 0.24 -50.65 16 9 Si 0.97 40.73 29.54 68.60 2.03 42.75 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 N -0.70 -26.68 4.97 -449.19 -2.23 -28.91 16 14 C 0.55 20.32 6.34 86.72 0.55 20.87 16 15 O -0.58 -25.82 13.55 -3.96 -0.05 -25.87 16 16 C -0.22 -6.05 5.89 -20.00 -0.12 -6.17 16 17 C 0.01 0.30 9.70 22.70 0.22 0.52 16 18 C -0.18 -3.34 10.02 22.43 0.22 -3.12 16 19 C 0.33 6.58 7.49 84.83 0.64 7.21 16 20 O -0.29 -5.16 9.99 -88.00 -0.88 -6.04 16 21 C 0.02 0.31 5.26 71.98 0.38 0.69 16 22 C 0.47 6.67 3.32 71.98 0.24 6.91 16 23 F -0.18 -3.06 17.26 44.97 0.78 -2.28 16 24 F -0.17 -2.36 17.32 44.97 0.78 -1.58 16 25 F -0.18 -3.04 17.26 44.97 0.78 -2.26 16 26 N -0.54 -11.29 9.18 -307.82 -2.82 -14.12 16 27 C 0.18 4.11 10.71 85.03 0.91 5.02 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.03 1.29 7.84 -2.39 -0.02 1.28 16 30 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 3.84 5.95 -2.39 -0.01 3.83 16 33 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.40 12.61 6.59 -92.71 -0.61 12.00 16 35 H 0.16 3.61 7.73 -2.91 -0.02 3.59 16 36 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.13 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.13 1.38 8.10 -2.39 -0.02 1.36 16 39 H 0.18 3.41 6.41 -2.91 -0.02 3.39 16 Total: -1.00 -64.08 344.97 3.71 -60.37 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.51 Total: 19.35 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.59 Total: 9.25 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -4.82 Total: -93.68 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.93 Total: -31.92 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 2.33 Total: -6.12 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -64.08 3.71 -60.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183917898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.622 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds