Wall clock time and date at job start Tue Mar 31 2020 16:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21551 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.47830 * 119.99931 * 180.02562 * 14 13 3 17 17 N 1.32861 * 119.78373 * 0.02562 * 16 14 13 18 18 C 1.31382 * 121.69446 * 179.97438 * 17 16 14 19 19 C 1.38763 * 121.06977 * 0.02562 * 18 17 16 20 20 C 1.38306 * 119.44417 * 359.97044 * 19 18 17 21 21 C 1.39347 * 118.43684 * 359.73577 * 20 19 18 22 22 O 1.35652 * 120.53757 * 180.28363 * 21 20 19 23 23 C 1.42896 * 117.00134 * 0.26931 * 22 21 20 24 24 C 1.53002 * 109.47045 * 180.02562 * 23 22 21 25 25 F 1.39901 * 109.47307 * 59.99892 * 24 23 22 26 26 F 1.39900 * 109.46950 * 179.97438 * 24 23 22 27 27 F 1.39902 * 109.47060 * 299.99775 * 24 23 22 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 35 35 H 1.08005 * 119.46116 * 179.97438 * 18 17 16 36 36 H 1.07993 * 120.27857 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.78105 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.47431 * 299.99931 * 23 22 21 39 39 H 1.09003 * 109.47224 * 59.99607 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6326 -0.4320 16 6 0.0440 3.3249 -2.6302 17 7 0.8955 3.3567 -3.6495 18 6 0.5868 3.9330 -4.7891 19 6 -0.6491 4.5361 -4.9750 20 6 -1.5707 4.5296 -3.9438 21 6 -1.2227 3.9068 -2.7467 22 8 -2.0962 3.8703 -1.7095 23 6 -3.3688 4.4881 -1.9109 24 6 -4.2106 4.3478 -0.6410 25 9 -3.5534 4.9708 0.4254 26 9 -5.4564 4.9531 -0.8381 27 9 -4.3915 2.9916 -0.3489 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 5.8770 0.4816 2.1128 34 1 2.2720 2.1232 -1.9977 35 1 1.3069 3.9382 -5.5940 36 1 -0.8896 5.0057 -5.9172 37 1 -2.5390 4.9921 -4.0650 38 1 -3.2279 5.5449 -2.1381 39 1 -3.8807 4.0030 -2.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183942713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:34 Heat of formation + Delta-G solvation = -178.741751 kcal Electronic energy + Delta-G solvation = -29247.761841 eV Core-core repulsion = 24548.604837 eV Total energy + Delta-G solvation = -4699.157003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.34131 -47.91954 -47.74163 -41.09955 -38.92017 -38.44158 -35.24674 -32.87669 -32.15381 -31.65512 -31.19356 -29.65010 -27.47396 -25.03137 -24.16804 -22.85781 -22.56462 -21.10908 -19.56457 -19.29521 -18.87119 -18.31902 -18.18475 -17.74557 -16.62442 -16.34946 -16.33547 -15.53176 -15.08630 -14.87618 -14.78626 -14.61723 -14.51467 -14.23984 -14.19882 -13.92366 -13.92007 -13.68500 -13.37698 -13.29354 -12.91991 -12.55578 -12.25475 -12.03497 -11.89885 -11.80428 -11.70833 -11.03035 -10.83071 -10.56473 -10.10989 -10.06273 -9.84687 -9.51355 -9.16281 -9.12381 -8.74197 -8.67860 -7.95142 -6.14460 -4.16360 0.55243 0.94147 1.89168 2.73795 3.04782 3.29050 3.38316 3.40674 3.46791 3.60668 3.67699 3.98693 4.01769 4.21834 4.25811 4.37831 4.41780 4.51105 4.56889 4.80517 4.93539 5.19132 5.37650 5.64737 5.67790 6.02496 6.05156 6.10297 6.25412 6.69848 6.74699 6.77684 6.91453 7.03597 7.34878 7.36312 7.57882 7.62703 8.24472 8.62234 8.83312 9.00294 9.46547 10.97666 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.004058 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.693970 B = 6897.665500 C = 8541.601694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.678 5.678 14 C 0.553 3.447 15 O -0.523 6.523 16 C 0.070 3.930 17 N -0.415 5.415 18 C 0.065 3.935 19 C -0.116 4.116 20 C -0.175 4.175 21 C 0.126 3.874 22 O -0.253 6.253 23 C 0.004 3.996 24 C 0.468 3.532 25 F -0.168 7.168 26 F -0.176 7.176 27 F -0.168 7.168 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.404 0.596 35 H 0.167 0.833 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.969 9.018 -13.789 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.326 5.326 14 C 0.336 3.664 15 O -0.399 6.399 16 C -0.069 4.069 17 N -0.127 5.127 18 C -0.096 4.096 19 C -0.136 4.136 20 C -0.201 4.201 21 C 0.076 3.924 22 O -0.163 6.163 23 C -0.074 4.074 24 C 0.413 3.587 25 F -0.149 7.149 26 F -0.158 7.158 27 F -0.150 7.150 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.239 0.761 35 H 0.184 0.816 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.528 8.430 -12.585 23.932 hybrid contribution -1.196 0.091 0.109 1.205 sum -19.724 8.521 -12.476 24.845 Atomic orbital electron populations 1.21872 0.96883 0.99013 1.02304 1.22287 0.94383 0.99870 1.01139 1.19209 0.95746 0.88544 0.82677 0.93162 1.21058 0.88556 1.39617 1.07835 0.90055 1.24815 0.94844 0.95161 0.97617 1.69867 1.08672 1.44660 1.29791 0.86927 0.81072 0.79987 0.80904 1.20242 1.22217 1.18361 1.46030 1.14293 1.54184 1.18131 1.17576 0.83493 0.79901 0.85468 1.90827 1.51420 1.59424 1.38240 1.21235 0.88716 1.01209 0.95779 1.67792 1.31903 1.13532 0.99474 1.22817 0.95819 0.95820 0.95097 1.22161 0.94000 0.98124 0.99280 1.21693 1.01998 1.03388 0.93064 1.19951 0.90160 0.95251 0.87026 1.86444 1.22049 1.72538 1.35308 1.23895 0.85891 1.02197 0.95412 1.19839 0.78473 0.74696 0.85668 1.93271 1.80439 1.82311 1.58888 1.93213 1.43781 1.83591 1.95168 1.93266 1.95322 1.32096 1.94281 0.93028 0.92758 0.95001 0.92735 0.92223 0.92349 0.76097 0.81635 0.83896 0.83825 0.87386 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.14 -3.18 5.11 -26.74 -0.14 -3.32 16 3 C 0.24 5.94 1.83 -69.09 -0.13 5.81 16 4 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16 5 C -0.53 -14.78 9.31 -34.44 -0.32 -15.10 16 6 H 0.08 2.38 7.98 -52.49 -0.42 1.96 16 7 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.88 22.18 24.41 -169.99 -4.15 18.03 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.33 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 13 N -0.68 -14.52 5.01 -55.89 -0.28 -14.80 16 14 C 0.55 11.23 6.37 -12.34 -0.08 11.16 16 15 O -0.52 -11.84 12.27 -16.63 -0.20 -12.04 16 16 C 0.07 1.15 6.76 -82.88 -0.56 0.59 16 17 N -0.42 -5.97 9.54 -9.71 -0.09 -6.06 16 18 C 0.06 0.64 11.17 -17.55 -0.20 0.45 16 19 C -0.12 -0.88 10.10 -39.36 -0.40 -1.28 16 20 C -0.18 -1.52 9.13 -39.14 -0.36 -1.88 16 21 C 0.13 1.67 6.71 -38.55 -0.26 1.42 16 22 O -0.25 -3.55 8.09 -40.60 -0.33 -3.88 16 23 C 0.00 0.03 4.72 37.16 0.18 0.21 16 24 C 0.47 5.06 3.32 37.16 0.12 5.18 16 25 F -0.17 -2.24 17.26 2.25 0.04 -2.20 16 26 F -0.18 -1.62 17.32 2.25 0.04 -1.58 16 27 F -0.17 -2.22 17.26 2.25 0.04 -2.18 16 28 H 0.05 1.08 5.65 -51.93 -0.29 0.78 16 29 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.31 3.22 -51.93 -0.17 1.14 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.40 8.13 7.86 -40.82 -0.32 7.81 16 35 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.14 0.71 6.46 -52.49 -0.34 0.37 16 38 H 0.11 0.61 7.69 -51.93 -0.40 0.21 16 39 H 0.11 0.60 7.71 -51.93 -0.40 0.20 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -34.10 335.82 -4.98 -39.08 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.96 Total: 3.96 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.91 Total: 2.69 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.40 Total: -46.95 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.53 Total: -15.92 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.12 Total: -5.96 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.15 Total: 18.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.10 -4.98 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183942713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.658 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds