Wall clock time and date at job start Tue Mar 31 2020 16:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76197 * 102.99839 * 2 1 4 4 C 1.39549 * 119.64162 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.29368 * 180.02562 * 4 3 2 6 6 C 1.38851 * 118.59078 * 359.97438 * 5 4 3 7 7 C 1.39122 * 119.23638 * 0.02562 * 6 5 4 8 8 C 1.48113 * 119.67602 * 179.97438 * 7 6 5 9 9 O 1.21530 * 120.00008 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99893 * 179.97438 * 8 7 6 11 11 C 1.40056 * 120.00152 * 180.02562 * 10 8 7 12 12 C 1.40429 * 125.97464 * 0.24988 * 11 10 8 13 13 C 1.35232 * 107.86663 * 180.15052 * 12 11 10 14 14 C 1.50703 * 126.06766 * 179.88433 * 13 12 11 15 15 N 1.34973 * 107.86541 * 359.62045 * 13 12 11 16 16 C 1.46499 * 125.97289 * 180.22205 * 15 13 12 17 17 C 1.50703 * 109.47477 * 90.00165 * 16 15 13 18 18 H 1.07995 * 119.99768 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99844 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99467 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00399 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47044 * 90.00027 * 21 19 17 23 23 H 1.48497 * 109.47173 * 210.00134 * 21 19 17 24 24 H 1.48497 * 109.46962 * 329.99735 * 21 19 17 25 25 N 1.31234 * 125.97707 * 179.97438 * 11 10 8 26 26 N 1.32126 * 119.64526 * 0.27474 * 3 2 1 27 27 H 1.09005 * 109.47279 * 60.00139 * 1 2 3 28 28 H 1.08998 * 109.47700 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47494 * 300.00256 * 1 2 3 30 30 H 1.08005 * 120.35265 * 0.03798 * 4 3 2 31 31 H 1.07998 * 120.70670 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.38181 * 180.02562 * 6 5 4 33 33 H 0.97005 * 119.99632 * 359.97438 * 10 8 7 34 34 H 1.08003 * 126.06837 * 0.05271 * 12 11 10 35 35 H 1.09002 * 109.47152 * 269.68932 * 14 13 12 36 36 H 1.09001 * 109.46980 * 149.69032 * 14 13 12 37 37 H 1.09004 * 109.47113 * 29.69013 * 14 13 12 38 38 H 1.09005 * 109.47089 * 210.00172 * 16 15 13 39 39 H 1.09005 * 109.47422 * 329.99662 * 16 15 13 40 40 H 0.96997 * 119.99714 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5473 2.1165 0.0005 5 6 3.8501 3.4652 0.0011 6 6 2.8060 4.3806 0.0005 7 6 1.4948 3.9157 0.0000 8 6 0.3736 4.8835 -0.0001 9 8 0.6013 6.0773 -0.0001 10 7 -0.8992 4.4403 -0.0011 11 6 -1.9595 5.3554 -0.0017 12 6 -1.8414 6.7547 -0.0062 13 6 -3.0890 7.2764 -0.0018 14 6 -3.4377 8.7426 -0.0019 15 7 -3.9666 6.2510 -0.0032 16 6 -5.4269 6.3681 -0.0043 17 6 -5.9267 6.4092 -1.4255 18 1 -5.2265 6.3541 -2.2458 19 6 -7.2777 6.5183 -1.6782 20 7 -7.7136 6.5547 -2.9185 21 14 -8.4887 6.6143 -0.2593 22 1 -8.6972 8.0352 0.1182 23 1 -9.7838 6.0167 -0.6725 24 1 -7.9478 5.8672 0.9045 25 7 -3.2370 5.0552 -0.0032 26 7 1.2384 2.6119 0.0055 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.3372 1.3799 0.0003 31 1 4.8769 3.8000 0.0019 32 1 3.0095 5.4412 0.0005 33 1 -1.0810 3.4874 -0.0022 34 1 -0.9180 7.3149 -0.0107 35 1 -3.5231 9.0958 1.0258 36 1 -4.3869 8.8903 -0.5169 37 1 -2.6552 9.3021 -0.5146 38 1 -5.8606 5.5096 0.5086 39 1 -5.7184 7.2839 0.5101 40 1 -8.6641 6.6311 -3.0964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592613773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:15 Heat of formation + Delta-G solvation = 84.347019 kcal Electronic energy + Delta-G solvation = -24766.156602 eV Core-core repulsion = 21095.310346 eV Total energy + Delta-G solvation = -3670.846256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08895 -40.44512 -38.89488 -35.05173 -33.48474 -32.98519 -31.99999 -31.41842 -31.08492 -29.14543 -27.32607 -26.45443 -25.20759 -24.17772 -22.70152 -21.66017 -19.85214 -19.71671 -18.21894 -17.38034 -17.13630 -16.50793 -16.29035 -15.92158 -15.58443 -15.36171 -14.76213 -14.67897 -14.33956 -14.25802 -13.85264 -13.81540 -13.47413 -13.24228 -12.93333 -12.59571 -12.44467 -12.36574 -12.32510 -12.04838 -11.59883 -11.26896 -11.03903 -10.83282 -10.61371 -10.53389 -10.32555 -10.13267 -10.05379 -9.98419 -9.74851 -9.60205 -8.80479 -8.05187 -7.96527 -7.53824 -6.28188 -4.31667 0.23922 0.68736 1.07232 1.87442 2.24100 2.58006 2.76219 3.13139 3.21493 3.22210 3.32100 3.56953 3.73654 3.97624 4.19799 4.40203 4.55962 4.62062 4.85925 4.94811 4.96216 4.99587 5.01298 5.29701 5.49526 5.56676 5.60775 5.68501 5.83894 6.00123 6.02860 6.13164 6.33405 6.39512 6.48798 6.55821 6.69157 7.10035 7.26386 7.31749 7.52835 7.81483 8.08557 8.28886 8.51847 8.77348 9.26758 10.84284 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002640 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.291311 B =10603.969285 C =11886.357313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.075 6.075 3 C 0.121 3.879 4 C -0.129 4.129 5 C -0.063 4.063 6 C -0.114 4.114 7 C 0.104 3.896 8 C 0.578 3.422 9 O -0.505 6.505 10 N -0.610 5.610 11 C 0.264 3.736 12 C -0.286 4.286 13 C 0.096 3.904 14 C -0.091 4.091 15 N -0.315 5.315 16 C 0.231 3.769 17 C -0.542 4.542 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.886 5.886 21 Si 0.872 3.128 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.263 1.263 25 N -0.313 5.313 26 N -0.467 5.467 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.419 0.581 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.003 -8.285 8.012 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.164 5.836 3 C -0.131 4.131 4 C -0.155 4.155 5 C -0.090 4.090 6 C -0.138 4.138 7 C -0.038 4.038 8 C 0.362 3.638 9 O -0.378 6.378 10 N -0.257 5.257 11 C 0.012 3.988 12 C -0.317 4.317 13 C -0.035 4.035 14 C -0.149 4.149 15 N -0.097 5.097 16 C 0.112 3.888 17 C -0.580 4.580 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.523 5.523 21 Si 0.698 3.302 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 N -0.143 5.143 26 N -0.183 5.183 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.256 0.744 34 H 0.179 0.821 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.734 -9.656 7.898 24.197 hybrid contribution -0.346 1.353 0.461 1.470 sum 20.388 -8.304 8.359 23.547 Atomic orbital electron populations 1.23543 0.92793 1.06626 1.07253 1.85510 1.08777 0.97988 1.91374 1.23088 0.91935 0.98377 0.99655 1.21882 0.95740 0.97222 1.00648 1.21560 1.00155 0.92072 0.95219 1.22103 0.91487 1.02455 0.97748 1.20925 0.93267 0.89721 0.99846 1.17706 0.81544 0.87361 0.77223 1.90745 1.83758 1.15073 1.48208 1.42196 1.02951 1.09875 1.70654 1.18946 0.87282 0.89439 1.03165 1.21267 0.97791 0.91716 1.20895 1.21069 0.89501 0.92375 1.00563 1.20416 1.03690 0.88292 1.02520 1.48553 1.07180 1.01119 1.52838 1.20014 0.70637 0.98361 0.99762 1.21176 0.93608 1.52885 0.90347 0.90079 1.24809 0.97812 0.94083 0.95803 1.69876 1.15188 1.48576 1.18634 0.86903 0.81341 0.79104 0.82816 1.19581 1.20480 1.18785 1.77283 1.01072 1.06837 1.29131 1.67922 1.35511 1.01633 1.13259 0.89001 0.87549 0.89095 0.83674 0.83258 0.82798 0.74442 0.82081 0.91010 0.89782 0.90288 0.93163 0.93577 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 10.01 101.05 1.01 -0.05 16 2 S -0.08 -0.64 22.55 -107.50 -2.42 -3.06 16 3 C 0.12 1.20 7.00 -16.94 -0.12 1.09 16 4 C -0.13 -0.99 9.84 -39.10 -0.38 -1.37 16 5 C -0.06 -0.44 10.16 -39.36 -0.40 -0.84 16 6 C -0.11 -1.11 9.63 -39.03 -0.38 -1.48 16 7 C 0.10 1.29 6.74 -83.03 -0.56 0.73 16 8 C 0.58 8.97 7.78 -12.21 -0.09 8.87 16 9 O -0.51 -8.76 13.44 5.34 0.07 -8.69 16 10 N -0.61 -10.22 5.43 -11.92 -0.06 -10.29 16 11 C 0.26 5.43 8.10 -154.47 -1.25 4.18 16 12 C -0.29 -5.80 9.52 -39.83 -0.38 -6.18 16 13 C 0.10 1.97 6.92 -82.28 -0.57 1.40 16 14 C -0.09 -1.49 9.89 36.01 0.36 -1.14 16 15 N -0.31 -7.30 3.59 -58.32 -0.21 -7.51 16 16 C 0.23 5.54 4.88 -5.19 -0.03 5.52 16 17 C -0.54 -15.13 9.94 -34.44 -0.34 -15.47 16 18 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 21 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 25 N -0.31 -7.19 12.59 31.42 0.40 -6.79 16 26 N -0.47 -5.51 8.60 -8.67 -0.07 -5.58 16 27 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.15 1.37 7.63 -52.49 -0.40 0.96 16 33 H 0.42 6.26 8.15 -40.82 -0.33 5.93 16 34 H 0.16 3.12 5.91 -52.48 -0.31 2.81 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 39 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -33.42 361.14 -8.72 -42.14 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.73 Total: 7.11 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.23 Total: -2.64 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.82 Total: -55.66 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.42 Total: -3.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.42 -8.72 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592613773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.490 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds