Wall clock time and date at job start Tue Mar 31 2020 16:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76197 * 102.99839 * 2 1 4 4 C 1.39549 * 119.64162 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.29368 * 180.02562 * 4 3 2 6 6 C 1.38851 * 118.59078 * 359.97438 * 5 4 3 7 7 C 1.39122 * 119.23638 * 0.02562 * 6 5 4 8 8 C 1.48113 * 119.67602 * 179.97438 * 7 6 5 9 9 O 1.21530 * 120.00008 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99893 * 179.97438 * 8 7 6 11 11 C 1.40056 * 120.00152 * 180.02562 * 10 8 7 12 12 C 1.40429 * 125.97464 * 0.24988 * 11 10 8 13 13 C 1.35232 * 107.86663 * 180.15052 * 12 11 10 14 14 C 1.50703 * 126.06766 * 179.88433 * 13 12 11 15 15 N 1.34973 * 107.86541 * 359.62045 * 13 12 11 16 16 C 1.46499 * 125.97289 * 180.22205 * 15 13 12 17 17 C 1.50703 * 109.47477 * 90.00165 * 16 15 13 18 18 H 1.07995 * 119.99768 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99844 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99467 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00399 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47044 * 90.00027 * 21 19 17 23 23 H 1.48497 * 109.47173 * 210.00134 * 21 19 17 24 24 H 1.48497 * 109.46962 * 329.99735 * 21 19 17 25 25 N 1.31234 * 125.97707 * 179.97438 * 11 10 8 26 26 N 1.32126 * 119.64526 * 0.27474 * 3 2 1 27 27 H 1.09005 * 109.47279 * 60.00139 * 1 2 3 28 28 H 1.08998 * 109.47700 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47494 * 300.00256 * 1 2 3 30 30 H 1.08005 * 120.35265 * 0.03798 * 4 3 2 31 31 H 1.07998 * 120.70670 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.38181 * 180.02562 * 6 5 4 33 33 H 0.97005 * 119.99632 * 359.97438 * 10 8 7 34 34 H 1.08003 * 126.06837 * 0.05271 * 12 11 10 35 35 H 1.09002 * 109.47152 * 269.68932 * 14 13 12 36 36 H 1.09001 * 109.46980 * 149.69032 * 14 13 12 37 37 H 1.09004 * 109.47113 * 29.69013 * 14 13 12 38 38 H 1.09005 * 109.47089 * 210.00172 * 16 15 13 39 39 H 1.09005 * 109.47422 * 329.99662 * 16 15 13 40 40 H 0.96997 * 119.99714 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5473 2.1165 0.0005 5 6 3.8501 3.4652 0.0011 6 6 2.8060 4.3806 0.0005 7 6 1.4948 3.9157 0.0000 8 6 0.3736 4.8835 -0.0001 9 8 0.6013 6.0773 -0.0001 10 7 -0.8992 4.4403 -0.0011 11 6 -1.9595 5.3554 -0.0017 12 6 -1.8414 6.7547 -0.0062 13 6 -3.0890 7.2764 -0.0018 14 6 -3.4377 8.7426 -0.0019 15 7 -3.9666 6.2510 -0.0032 16 6 -5.4269 6.3681 -0.0043 17 6 -5.9267 6.4092 -1.4255 18 1 -5.2265 6.3541 -2.2458 19 6 -7.2777 6.5183 -1.6782 20 7 -7.7136 6.5547 -2.9185 21 14 -8.4887 6.6143 -0.2593 22 1 -8.6972 8.0352 0.1182 23 1 -9.7838 6.0167 -0.6725 24 1 -7.9478 5.8672 0.9045 25 7 -3.2370 5.0552 -0.0032 26 7 1.2384 2.6119 0.0055 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.3372 1.3799 0.0003 31 1 4.8769 3.8000 0.0019 32 1 3.0095 5.4412 0.0005 33 1 -1.0810 3.4874 -0.0022 34 1 -0.9180 7.3149 -0.0107 35 1 -3.5231 9.0958 1.0258 36 1 -4.3869 8.8903 -0.5169 37 1 -2.6552 9.3021 -0.5146 38 1 -5.8606 5.5096 0.5086 39 1 -5.7184 7.2839 0.5101 40 1 -8.6641 6.6311 -3.0964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592613773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:14 Heat of formation + Delta-G solvation = 62.424780 kcal Electronic energy + Delta-G solvation = -24767.107221 eV Core-core repulsion = 21095.310346 eV Total energy + Delta-G solvation = -3671.796875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47825 -41.56065 -40.05237 -36.51854 -35.31839 -33.92160 -33.24392 -32.85310 -32.49904 -29.79410 -29.14011 -27.94006 -26.30693 -24.91928 -24.42506 -22.93567 -21.33780 -21.11455 -19.27019 -19.24986 -18.38473 -17.68332 -17.17825 -17.13763 -16.83606 -16.72048 -16.29551 -15.80613 -15.62080 -15.20109 -15.12207 -14.94040 -14.54094 -14.41457 -14.24130 -13.92848 -13.79375 -13.67623 -13.55462 -13.29402 -13.01121 -12.88683 -12.57303 -12.33282 -11.87075 -11.85412 -11.61909 -11.50392 -11.28717 -11.21224 -10.90874 -10.89342 -10.81047 -9.67057 -9.19834 -8.64071 -8.42121 -6.53751 -0.57922 -0.00006 0.40765 0.87134 1.15495 1.21393 1.34106 1.36266 1.39089 1.47453 2.04580 2.16041 2.25587 2.64410 2.90044 2.93445 3.65340 3.80524 3.85177 3.98429 4.04159 4.17123 4.27865 4.32386 4.37456 4.40208 4.51841 4.67213 4.75528 4.78210 4.89293 4.91444 4.93038 5.02879 5.07076 5.18005 5.21203 5.39444 5.77212 5.95283 6.02338 6.32860 6.37291 6.50050 6.80348 6.91854 7.10289 8.74658 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002640 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.291311 B =10603.969285 C =11886.357313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.062 6.062 3 C 0.099 3.901 4 C -0.117 4.117 5 C -0.049 4.049 6 C -0.112 4.112 7 C 0.075 3.925 8 C 0.579 3.421 9 O -0.527 6.527 10 N -0.611 5.611 11 C 0.269 3.731 12 C -0.297 4.297 13 C 0.093 3.907 14 C -0.088 4.088 15 N -0.340 5.340 16 C 0.241 3.759 17 C -0.552 4.552 18 H 0.023 0.977 19 C 0.022 3.978 20 N -0.937 5.937 21 Si 0.951 3.049 22 H -0.248 1.248 23 H -0.278 1.278 24 H -0.245 1.245 25 N -0.353 5.353 26 N -0.485 5.485 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.177 0.823 31 H 0.194 0.806 32 H 0.160 0.840 33 H 0.424 0.576 34 H 0.171 0.829 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.878 -8.357 10.036 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.176 5.824 3 C -0.153 4.153 4 C -0.142 4.142 5 C -0.076 4.076 6 C -0.136 4.136 7 C -0.065 4.065 8 C 0.365 3.635 9 O -0.401 6.401 10 N -0.258 5.258 11 C 0.015 3.985 12 C -0.327 4.327 13 C -0.037 4.037 14 C -0.146 4.146 15 N -0.122 5.122 16 C 0.121 3.879 17 C -0.590 4.590 18 H 0.041 0.959 19 C -0.178 4.178 20 N -0.576 5.576 21 Si 0.772 3.228 22 H -0.172 1.172 23 H -0.203 1.203 24 H -0.168 1.168 25 N -0.184 5.184 26 N -0.202 5.202 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.102 0.898 30 H 0.195 0.805 31 H 0.211 0.789 32 H 0.178 0.822 33 H 0.262 0.738 34 H 0.188 0.812 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.652 -9.730 9.926 26.577 hybrid contribution -0.699 1.279 -0.268 1.482 sum 21.954 -8.451 9.658 25.430 Atomic orbital electron populations 1.23570 0.92892 1.07643 1.06302 1.85389 1.08717 0.97030 1.91229 1.23527 0.92888 0.98671 1.00198 1.22347 0.95388 0.98337 0.98148 1.22029 1.01328 0.91174 0.93056 1.22315 0.90947 1.03445 0.96862 1.20562 0.92888 0.89610 1.03435 1.18294 0.81580 0.87874 0.75744 1.90700 1.84066 1.16244 1.49132 1.42353 1.02729 1.09720 1.71043 1.19299 0.87463 0.90480 1.01226 1.21471 0.98112 0.91733 1.21397 1.21806 0.89229 0.93804 0.98826 1.20573 1.03583 0.85824 1.04665 1.48487 1.07084 1.01885 1.54771 1.19809 0.71528 0.99426 0.97097 1.21242 0.93246 1.53427 0.91099 0.95883 1.25843 0.99870 0.92990 0.99090 1.70038 1.16048 1.49868 1.21600 0.85669 0.77754 0.80469 0.78897 1.17241 1.20346 1.16850 1.77192 1.02210 1.07617 1.31344 1.67788 1.36752 1.01624 1.14035 0.90168 0.85600 0.89806 0.80521 0.78935 0.82230 0.73760 0.81187 0.87803 0.91226 0.88093 0.93278 0.90699 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.01 113.37 1.14 -1.00 16 2 S -0.06 -0.98 22.55 -56.49 -1.27 -2.25 16 3 C 0.10 1.82 7.00 84.96 0.59 2.42 16 4 C -0.12 -1.41 9.84 22.58 0.22 -1.19 16 5 C -0.05 -0.51 10.16 22.41 0.23 -0.29 16 6 C -0.11 -1.98 9.63 22.63 0.22 -1.76 16 7 C 0.07 1.84 6.74 41.82 0.28 2.12 16 8 C 0.58 18.35 7.78 86.87 0.68 19.03 16 9 O -0.53 -18.51 13.44 -3.81 -0.05 -18.57 16 10 N -0.61 -21.26 5.43 -309.91 -1.68 -22.95 16 11 C 0.27 11.43 8.10 133.36 1.08 12.51 16 12 C -0.30 -12.21 9.52 22.11 0.21 -12.00 16 13 C 0.09 3.87 6.92 41.38 0.29 4.16 16 14 C -0.09 -2.80 9.89 71.24 0.70 -2.09 16 15 N -0.34 -16.11 3.59 -338.43 -1.22 -17.33 16 16 C 0.24 11.62 4.88 85.63 0.42 12.03 16 17 C -0.55 -31.99 9.94 25.60 0.25 -31.73 16 18 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 19 C 0.02 1.23 5.47 84.65 0.46 1.70 16 20 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 21 Si 0.95 40.90 27.47 68.60 1.88 42.79 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.25 -9.76 6.54 99.48 0.65 -9.11 16 25 N -0.35 -16.85 12.59 -54.49 -0.69 -17.54 16 26 N -0.49 -11.34 8.60 -181.34 -1.56 -12.90 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 31 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 32 H 0.16 2.58 7.63 -2.91 -0.02 2.56 16 33 H 0.42 13.42 8.15 -92.70 -0.76 12.66 16 34 H 0.17 6.62 5.91 -2.91 -0.02 6.61 16 35 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.42 7.71 -2.39 -0.02 2.40 16 37 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 38 H 0.05 2.36 7.20 -2.38 -0.02 2.34 16 39 H 0.08 3.16 7.07 -2.38 -0.02 3.14 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -77.26 361.14 2.76 -74.50 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.28 Total: 27.37 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 6.77 Total: 3.92 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -4.85 Total: -127.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.88 Total: 42.79 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.27 Total: -2.25 kcal Total: -77.26 2.76 -74.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592613773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.920 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds