Wall clock time and date at job start Tue Mar 31 2020 17:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.47160 * 2 1 4 4 N 1.46502 * 109.46787 * 240.00517 * 2 1 3 5 5 C 1.34775 * 120.00391 * 85.00395 * 4 2 1 6 6 O 1.21583 * 119.99845 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.39964 * 119.99601 * 174.81817 * 7 5 4 9 9 C 1.39288 * 119.94382 * 146.38000 * 8 7 5 10 10 C 1.38494 * 120.42483 * 179.97438 * 9 8 7 11 11 C 1.37684 * 120.32089 * 0.02562 * 10 9 8 12 12 C 1.40733 * 119.88395 * 359.97438 * 11 10 9 13 13 C 1.41406 * 120.20993 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00514 * 151.79013 * 13 12 11 15 15 C 1.39934 * 120.00087 * 331.79849 * 13 12 11 16 16 N 1.30828 * 119.99760 * 348.98184 * 15 13 12 17 17 Si 1.86795 * 120.00165 * 168.99149 * 15 13 12 18 18 H 1.48494 * 109.47396 * 59.99655 * 17 15 13 19 19 H 1.48506 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47253 * 299.99349 * 17 15 13 21 21 C 1.38233 * 119.94812 * 326.10142 * 8 7 5 22 22 C 1.52994 * 109.47119 * 120.00307 * 2 1 3 23 23 H 1.09000 * 109.47092 * 300.00304 * 22 2 1 24 24 O 1.42906 * 109.47117 * 60.00158 * 22 2 1 25 25 C 1.53000 * 109.47103 * 179.97438 * 22 2 1 26 26 F 1.39897 * 109.47038 * 299.99677 * 25 22 2 27 27 F 1.39896 * 109.47177 * 60.00297 * 25 22 2 28 28 F 1.39905 * 109.47045 * 179.97438 * 25 22 2 29 29 H 1.08991 * 109.46924 * 299.99919 * 1 2 3 30 30 H 1.09001 * 109.46713 * 59.99868 * 1 2 3 31 31 H 1.09004 * 109.46796 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99668 * 264.99706 * 4 2 1 33 33 H 0.96994 * 120.00516 * 354.81003 * 7 5 4 34 34 H 1.07999 * 119.79048 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.83704 * 180.02562 * 10 9 8 36 36 H 1.07997 * 120.05267 * 179.97438 * 11 10 9 37 37 H 0.97005 * 120.00296 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.15527 * 0.02562 * 21 8 7 39 39 H 0.96698 * 114.00110 * 59.99524 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8576 1.1615 -2.4118 7 7 2.5968 -0.6533 -3.4575 8 6 2.6281 0.0143 -4.6872 9 6 3.6379 -0.2656 -5.6048 10 6 3.6782 0.3888 -6.8248 11 6 2.7197 1.3244 -7.1436 12 6 1.6934 1.6175 -6.2264 13 6 0.7058 2.5776 -6.5465 14 1 -0.2823 2.4998 -6.1174 15 6 1.0086 3.6285 -7.4195 16 7 2.2494 3.8512 -7.7695 17 14 -0.3587 4.7134 -8.0848 18 1 -1.0590 5.3758 -6.9553 19 1 0.2206 5.7460 -8.9813 20 1 -1.3244 3.8815 -8.8465 21 6 1.6536 0.9463 -4.9915 22 6 2.0401 -0.7213 1.2492 23 1 1.6767 -0.2075 2.1392 24 8 1.5638 -2.0686 1.2491 25 6 3.5701 -0.7218 1.2488 26 9 4.0359 -1.3817 0.1066 27 9 4.0369 0.5969 1.2487 28 9 4.0364 -1.3809 2.3914 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 2.8988 -1.5731 -3.3972 34 1 4.3944 -0.9977 -5.3635 35 1 4.4652 0.1640 -7.5294 36 1 2.7555 1.8323 -8.0960 37 1 2.4594 4.5799 -8.3744 38 1 0.8679 1.1610 -4.2822 39 1 1.8490 -2.5866 0.4840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603033762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:20 Heat of formation + Delta-G solvation = -204.826436 kcal Electronic energy + Delta-G solvation = -29012.783582 eV Core-core repulsion = 24312.495462 eV Total energy + Delta-G solvation = -4700.288120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.44703 -47.96843 -47.91102 -40.28909 -38.63411 -37.20862 -34.90813 -34.30591 -33.05389 -31.24823 -29.78047 -29.04969 -27.79074 -25.26600 -24.24939 -22.68054 -21.19387 -20.81298 -20.27498 -19.09553 -18.93482 -18.64190 -18.24214 -17.73534 -16.71950 -15.79670 -15.48445 -15.15361 -14.98649 -14.75820 -14.69185 -14.50516 -14.33185 -14.25497 -14.19251 -14.07998 -14.04076 -13.75157 -13.29796 -12.94383 -12.79506 -12.48678 -12.28283 -12.05236 -11.71817 -11.51752 -11.27233 -11.09134 -10.86040 -10.65429 -10.48020 -10.18013 -9.75220 -9.60415 -9.23719 -9.13248 -8.90180 -7.38557 -6.85193 -6.62760 -4.31331 2.24375 2.60453 2.80179 2.95045 3.11491 3.14984 3.20887 3.24316 3.33829 3.49056 3.65857 3.90261 4.00454 4.23039 4.40596 4.65116 4.71605 4.94277 5.07932 5.47745 5.70673 5.74842 6.07857 6.24235 6.29707 6.41427 6.62144 6.67666 6.78663 7.06631 7.12198 7.25452 7.34102 7.69353 7.80743 8.01688 8.12788 8.26901 8.39604 8.69827 8.89738 8.99571 9.03714 10.30496 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.002939 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.524887 B = 9525.969328 C =10163.763497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.113 0.887 4 N -0.752 5.752 5 C 0.703 3.297 6 O -0.557 6.557 7 N -0.678 5.678 8 C 0.166 3.834 9 C -0.259 4.259 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.120 3.880 13 C -0.458 4.458 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.801 5.801 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.207 4.207 22 C 0.067 3.933 23 H 0.156 0.844 24 O -0.523 6.523 25 C 0.420 3.580 26 F -0.179 7.179 27 F -0.173 7.173 28 F -0.179 7.179 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.389 0.611 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.279 0.721 38 H 0.107 0.893 39 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -10.750 16.027 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.130 0.870 4 N -0.412 5.412 5 C 0.403 3.597 6 O -0.431 6.431 7 N -0.324 5.324 8 C 0.074 3.926 9 C -0.281 4.281 10 C -0.113 4.113 11 C -0.188 4.188 12 C 0.116 3.884 13 C -0.489 4.489 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.428 5.428 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.228 4.228 22 C 0.005 3.995 23 H 0.174 0.826 24 O -0.329 6.329 25 C 0.365 3.635 26 F -0.160 7.160 27 F -0.155 7.155 28 F -0.160 7.160 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.227 0.773 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.472 -9.288 16.415 18.867 hybrid contribution 0.505 -0.512 -0.659 0.976 sum 0.033 -9.799 15.756 18.555 Atomic orbital electron populations 1.22082 0.92684 1.03140 1.03538 1.21442 0.96500 0.98250 0.81586 0.86957 1.45223 1.73340 1.13331 1.09323 1.15853 0.78838 0.85152 0.79840 1.91013 1.54998 1.13561 1.83539 1.42551 1.67290 1.15701 1.06875 1.17224 0.96003 0.96571 0.82842 1.20027 1.01053 1.09280 0.97747 1.20469 0.98301 0.97158 0.95338 1.21401 0.97574 0.99194 1.00665 1.17489 0.91967 0.89875 0.89020 1.19505 0.98660 1.07387 1.23301 0.90652 1.25872 0.96115 0.97731 0.94562 1.69797 1.18632 1.27071 1.27254 0.86322 0.81396 0.79351 0.79330 1.19071 1.20402 1.18943 1.20980 1.00656 1.03698 0.97516 1.23692 0.85866 0.86777 1.03206 0.82641 1.86735 1.75043 1.21115 1.49991 1.21603 0.93819 0.74272 0.73798 1.93159 1.90708 1.81102 1.51038 1.93235 1.90508 1.35624 1.96123 1.93216 1.90713 1.81183 1.50881 0.91291 0.90558 0.91535 0.77587 0.77262 0.89357 0.89037 0.86102 0.91000 0.87468 0.76748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.34 37.16 0.35 -1.14 16 2 C 0.13 1.29 2.29 -67.93 -0.16 1.13 16 3 H 0.11 1.37 7.24 -51.93 -0.38 0.99 16 4 N -0.75 -8.60 3.77 -58.68 -0.22 -8.82 16 5 C 0.70 12.20 8.26 -86.92 -0.72 11.49 16 6 O -0.56 -12.44 13.72 5.29 0.07 -12.37 16 7 N -0.68 -11.81 5.35 -14.27 -0.08 -11.89 16 8 C 0.17 3.73 6.26 -83.76 -0.52 3.21 16 9 C -0.26 -5.71 9.97 -39.10 -0.39 -6.10 16 10 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 11 C -0.17 -4.44 8.66 -38.84 -0.34 -4.78 16 12 C 0.12 3.29 5.55 -106.85 -0.59 2.70 16 13 C -0.46 -12.63 9.06 -37.74 -0.34 -12.97 16 14 H 0.08 2.01 7.87 -52.48 -0.41 1.60 16 15 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 16 N -0.80 -21.36 10.81 55.55 0.60 -20.76 16 17 Si 0.91 19.31 29.57 -169.99 -5.03 14.29 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.21 -5.34 8.39 -38.69 -0.32 -5.67 16 22 C 0.07 0.49 2.89 -26.73 -0.08 0.42 16 23 H 0.16 0.82 8.14 -51.93 -0.42 0.40 16 24 O -0.52 -3.53 12.61 -35.23 -0.44 -3.97 16 25 C 0.42 3.95 2.85 37.16 0.11 4.05 16 26 F -0.18 -1.79 14.39 2.25 0.03 -1.75 16 27 F -0.17 -1.97 16.80 2.25 0.04 -1.94 16 28 F -0.18 -1.75 17.26 2.25 0.04 -1.71 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.39 3.18 6.03 -40.82 -0.25 2.93 16 33 H 0.39 5.21 8.83 -40.82 -0.36 4.85 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 37 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.11 2.85 6.44 -52.49 -0.34 2.51 16 39 H 0.38 1.65 7.15 45.56 0.33 1.98 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -32.95 340.64 -6.73 -39.67 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -3.38 Total: 12.55 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.50 Total: -8.43 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.30 Total: -41.47 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.37 Total: -16.34 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.95 -6.73 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603033762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.152 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds