Wall clock time and date at job start Tue Mar 31 2020 17:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.47160 * 2 1 4 4 N 1.46502 * 109.46787 * 240.00517 * 2 1 3 5 5 C 1.34775 * 120.00391 * 85.00395 * 4 2 1 6 6 O 1.21583 * 119.99845 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.39964 * 119.99601 * 174.81817 * 7 5 4 9 9 C 1.39288 * 119.94382 * 146.38000 * 8 7 5 10 10 C 1.38494 * 120.42483 * 179.97438 * 9 8 7 11 11 C 1.37684 * 120.32089 * 0.02562 * 10 9 8 12 12 C 1.40733 * 119.88395 * 359.97438 * 11 10 9 13 13 C 1.41406 * 120.20993 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00514 * 151.79013 * 13 12 11 15 15 C 1.39934 * 120.00087 * 331.79849 * 13 12 11 16 16 N 1.30828 * 119.99760 * 348.98184 * 15 13 12 17 17 Si 1.86795 * 120.00165 * 168.99149 * 15 13 12 18 18 H 1.48494 * 109.47396 * 59.99655 * 17 15 13 19 19 H 1.48506 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47253 * 299.99349 * 17 15 13 21 21 C 1.38233 * 119.94812 * 326.10142 * 8 7 5 22 22 C 1.52994 * 109.47119 * 120.00307 * 2 1 3 23 23 H 1.09000 * 109.47092 * 300.00304 * 22 2 1 24 24 O 1.42906 * 109.47117 * 60.00158 * 22 2 1 25 25 C 1.53000 * 109.47103 * 179.97438 * 22 2 1 26 26 F 1.39897 * 109.47038 * 299.99677 * 25 22 2 27 27 F 1.39896 * 109.47177 * 60.00297 * 25 22 2 28 28 F 1.39905 * 109.47045 * 179.97438 * 25 22 2 29 29 H 1.08991 * 109.46924 * 299.99919 * 1 2 3 30 30 H 1.09001 * 109.46713 * 59.99868 * 1 2 3 31 31 H 1.09004 * 109.46796 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99668 * 264.99706 * 4 2 1 33 33 H 0.96994 * 120.00516 * 354.81003 * 7 5 4 34 34 H 1.07999 * 119.79048 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.83704 * 180.02562 * 10 9 8 36 36 H 1.07997 * 120.05267 * 179.97438 * 11 10 9 37 37 H 0.97005 * 120.00296 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.15527 * 0.02562 * 21 8 7 39 39 H 0.96698 * 114.00110 * 59.99524 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8576 1.1615 -2.4118 7 7 2.5968 -0.6533 -3.4575 8 6 2.6281 0.0143 -4.6872 9 6 3.6379 -0.2656 -5.6048 10 6 3.6782 0.3888 -6.8248 11 6 2.7197 1.3244 -7.1436 12 6 1.6934 1.6175 -6.2264 13 6 0.7058 2.5776 -6.5465 14 1 -0.2823 2.4998 -6.1174 15 6 1.0086 3.6285 -7.4195 16 7 2.2494 3.8512 -7.7695 17 14 -0.3587 4.7134 -8.0848 18 1 -1.0590 5.3758 -6.9553 19 1 0.2206 5.7460 -8.9813 20 1 -1.3244 3.8815 -8.8465 21 6 1.6536 0.9463 -4.9915 22 6 2.0401 -0.7213 1.2492 23 1 1.6767 -0.2075 2.1392 24 8 1.5638 -2.0686 1.2491 25 6 3.5701 -0.7218 1.2488 26 9 4.0359 -1.3817 0.1066 27 9 4.0369 0.5969 1.2487 28 9 4.0364 -1.3809 2.3914 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 -1.1527 33 1 2.8988 -1.5731 -3.3972 34 1 4.3944 -0.9977 -5.3635 35 1 4.4652 0.1640 -7.5294 36 1 2.7555 1.8323 -8.0960 37 1 2.4594 4.5799 -8.3744 38 1 0.8679 1.1610 -4.2822 39 1 1.8490 -2.5866 0.4840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603033762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:19 Heat of formation + Delta-G solvation = -228.582396 kcal Electronic energy + Delta-G solvation = -29013.813718 eV Core-core repulsion = 24312.495462 eV Total energy + Delta-G solvation = -4701.318256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.22653 -48.75915 -48.69960 -41.62122 -39.72494 -38.75171 -36.27028 -35.69011 -34.83646 -32.30671 -31.72165 -29.87046 -29.42957 -27.23136 -25.10145 -23.91614 -22.80158 -22.27986 -21.72827 -20.00277 -19.76486 -19.55431 -19.47523 -19.22210 -17.89651 -17.25004 -16.74859 -16.60322 -16.46495 -16.23940 -15.60248 -15.54761 -15.44382 -15.11954 -15.05601 -14.97052 -14.87963 -14.84669 -14.65100 -14.63304 -14.10390 -13.86736 -13.54101 -13.25614 -13.10370 -12.91973 -12.81524 -12.55572 -12.30131 -12.21289 -11.99133 -11.58966 -11.58152 -11.32160 -11.04136 -10.71603 -10.31002 -9.33964 -8.67155 -8.54766 -6.36377 0.94641 1.03828 1.36979 1.48615 1.50427 1.52309 1.54424 2.15628 2.23312 2.54517 2.59764 2.75873 2.78950 3.19813 3.22501 3.49773 3.76266 4.00486 4.13011 4.28301 4.48287 4.64634 4.68710 4.86897 5.06454 5.12325 5.14536 5.18926 5.26331 5.31905 5.35977 5.69474 5.83755 6.04603 6.12423 6.15033 6.18478 6.39013 6.71664 6.97115 7.00865 7.04651 7.56194 8.39296 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.002939 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.524887 B = 9525.969328 C =10163.763497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 H 0.090 0.910 4 N -0.727 5.727 5 C 0.700 3.300 6 O -0.610 6.610 7 N -0.668 5.668 8 C 0.174 3.826 9 C -0.248 4.248 10 C -0.093 4.093 11 C -0.195 4.195 12 C 0.088 3.912 13 C -0.502 4.502 14 H 0.066 0.934 15 C 0.032 3.968 16 N -0.833 5.833 17 Si 0.985 3.015 18 H -0.266 1.266 19 H -0.264 1.264 20 H -0.257 1.257 21 C -0.231 4.231 22 C 0.088 3.912 23 H 0.184 0.816 24 O -0.521 6.521 25 C 0.416 3.584 26 F -0.184 7.184 27 F -0.188 7.188 28 F -0.179 7.179 29 H 0.093 0.907 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.418 0.582 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.087 0.913 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -12.493 17.310 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 H 0.108 0.892 4 N -0.388 5.388 5 C 0.401 3.599 6 O -0.488 6.488 7 N -0.316 5.316 8 C 0.080 3.920 9 C -0.269 4.269 10 C -0.112 4.112 11 C -0.215 4.215 12 C 0.086 3.914 13 C -0.532 4.532 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.459 5.459 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.188 1.188 20 H -0.181 1.181 21 C -0.253 4.253 22 C 0.026 3.974 23 H 0.201 0.799 24 O -0.328 6.328 25 C 0.361 3.639 26 F -0.165 7.165 27 F -0.169 7.169 28 F -0.160 7.160 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.256 0.744 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.115 -11.133 17.747 20.950 hybrid contribution 0.503 -0.127 -0.922 1.058 sum 0.387 -11.260 16.825 20.249 Atomic orbital electron populations 1.22021 0.91969 1.03889 1.02944 1.21580 0.97019 0.97604 0.81899 0.89187 1.44967 1.71790 1.14067 1.07948 1.16053 0.78247 0.84660 0.80942 1.90993 1.57022 1.16260 1.84562 1.42298 1.67317 1.16586 1.05405 1.17263 0.94723 0.95383 0.84620 1.20453 1.00987 1.08913 0.96590 1.20836 0.97934 0.95869 0.96523 1.21359 0.98917 1.00953 1.00244 1.17829 0.92859 0.90676 0.90066 1.19739 0.98714 1.09181 1.25612 0.91598 1.26725 0.98687 0.98587 0.94108 1.69856 1.20378 1.27921 1.27784 0.85224 0.78089 0.77500 0.78659 1.19029 1.18811 1.18098 1.20937 1.01732 1.05648 0.96938 1.23601 0.84221 0.87129 1.02459 0.79885 1.86751 1.74739 1.20546 1.50749 1.21954 0.94787 0.73570 0.73579 1.93142 1.90931 1.81117 1.51335 1.93212 1.90808 1.36746 1.96172 1.93216 1.90832 1.81092 1.50875 0.88853 0.94235 0.90024 0.75241 0.74446 0.85121 0.85968 0.87690 0.90281 0.89490 0.75422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.34 71.99 0.67 -1.98 16 2 C 0.12 2.33 2.29 44.99 0.10 2.43 16 3 H 0.09 2.18 7.24 -2.39 -0.02 2.16 16 4 N -0.73 -15.54 3.77 -457.82 -1.73 -17.27 16 5 C 0.70 24.11 8.26 179.06 1.48 25.59 16 6 O -0.61 -28.23 13.72 -3.98 -0.05 -28.28 16 7 N -0.67 -22.35 5.35 -317.33 -1.70 -24.05 16 8 C 0.17 7.77 6.26 38.09 0.24 8.01 16 9 C -0.25 -10.38 9.97 22.58 0.23 -10.15 16 10 C -0.09 -4.26 10.02 22.20 0.22 -4.03 16 11 C -0.19 -10.56 8.66 22.75 0.20 -10.37 16 12 C 0.09 5.11 5.55 -21.31 -0.12 4.99 16 13 C -0.50 -29.29 9.06 23.46 0.21 -29.07 16 14 H 0.07 3.78 7.87 -2.91 -0.02 3.75 16 15 C 0.03 1.73 5.25 85.25 0.45 2.18 16 16 N -0.83 -45.88 10.81 21.82 0.24 -45.64 16 17 Si 0.98 40.65 29.57 68.60 2.03 42.68 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 21 C -0.23 -12.41 8.39 22.85 0.19 -12.22 16 22 C 0.09 1.06 2.89 30.59 0.09 1.14 16 23 H 0.18 1.27 8.14 -2.39 -0.02 1.25 16 24 O -0.52 -5.13 12.61 -148.98 -1.88 -7.00 16 25 C 0.42 6.92 2.85 71.98 0.20 7.13 16 26 F -0.18 -3.24 14.39 44.97 0.65 -2.60 16 27 F -0.19 -4.06 16.80 44.97 0.76 -3.31 16 28 F -0.18 -3.07 17.26 44.97 0.78 -2.30 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.19 7.68 -2.38 -0.02 1.18 16 32 H 0.41 5.54 6.03 -92.71 -0.56 4.98 16 33 H 0.42 9.80 8.83 -92.71 -0.82 8.98 16 34 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.11 5.93 6.18 -2.91 -0.02 5.91 16 37 H 0.29 14.27 8.30 -92.70 -0.77 13.50 16 38 H 0.09 4.94 6.44 -2.91 -0.02 4.92 16 39 H 0.39 1.91 7.15 -74.06 -0.53 1.38 16 Total: -1.00 -76.38 340.64 2.50 -73.89 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.76 Total: 30.24 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 4.16 Total: -16.36 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -3.19 Total: -86.96 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.93 Total: -35.29 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 2.18 Total: -8.20 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -76.38 2.50 -73.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603033762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.697 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds