Wall clock time and date at job start Tue Mar 31 2020 16:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 N 1.46503 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.35761 * 119.62568 * 269.72463 * 17 16 14 19 19 C 1.35346 * 120.70348 * 179.75810 * 18 17 16 20 20 C 1.40203 * 119.94561 * 0.51866 * 19 18 17 21 21 C 1.36395 * 119.26216 * 359.74383 * 20 19 18 22 22 C 1.50710 * 120.34415 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.46909 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.47055 * 119.97387 * 22 21 20 25 25 F 1.39898 * 109.46960 * 239.97856 * 22 21 20 26 26 C 1.34663 * 119.62328 * 90.00519 * 17 16 14 27 27 O 1.22053 * 119.98358 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 36 36 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 37 37 H 1.08007 * 119.65126 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.02938 * 180.27611 * 19 18 17 39 39 H 1.08000 * 120.36554 * 179.72516 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 7 -1.3221 3.8709 2.5268 18 6 -1.5058 5.1381 2.0755 19 6 -2.7514 5.6511 1.9441 20 6 -3.8677 4.8749 2.2860 21 6 -3.6808 3.6038 2.7442 22 6 -4.8634 2.7478 3.1183 23 9 -6.0446 3.4688 2.9128 24 9 -4.8757 1.5964 2.3236 25 9 -4.7679 2.3836 4.4657 26 6 -2.3741 3.1006 2.8634 27 8 -2.1926 1.9649 3.2720 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.0673 2.6129 3.4685 36 1 0.7277 4.1529 2.8680 37 1 -0.6491 5.7421 1.8152 38 1 -2.8851 6.6590 1.5798 39 1 -4.8644 5.2790 2.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762719508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:03 Heat of formation + Delta-G solvation = -185.308910 kcal Electronic energy + Delta-G solvation = -29292.330184 eV Core-core repulsion = 24592.888407 eV Total energy + Delta-G solvation = -4699.441777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.05722 -47.63476 -47.43065 -41.70285 -39.03431 -37.13984 -35.51105 -34.73841 -32.54017 -31.21061 -30.78973 -28.63062 -26.77356 -26.50121 -23.61806 -22.95027 -22.82890 -20.64088 -19.50290 -18.81945 -18.60011 -18.38338 -17.60883 -17.25188 -17.08166 -16.40337 -15.94144 -15.32224 -15.05083 -14.86561 -14.71829 -14.40848 -14.33980 -14.12495 -13.94099 -13.65400 -13.63797 -13.35677 -13.21137 -12.93245 -12.73981 -12.59652 -12.15893 -11.95894 -11.79118 -11.46896 -11.29504 -11.06255 -10.88077 -10.81204 -10.38656 -10.25217 -10.17243 -9.66123 -9.26026 -9.12544 -8.57068 -8.34140 -7.98136 -6.18725 -4.29465 0.29237 1.62572 2.13178 2.80697 3.07726 3.20189 3.20550 3.26694 3.27176 3.75561 3.89199 4.00833 4.28666 4.31067 4.45714 4.52246 4.61723 4.81020 4.97177 5.12225 5.16028 5.19517 5.42733 5.61484 5.74157 6.12115 6.40249 6.47060 6.65796 6.71457 7.02960 7.15944 7.26159 7.35036 7.54362 7.62850 7.77142 7.81599 8.11274 8.47213 8.65711 8.92254 9.37673 10.86356 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.002990 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.481031 B = 9361.806316 C = 9878.200796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.488 3.512 15 O -0.534 6.534 16 C 0.063 3.937 17 N -0.471 5.471 18 C 0.190 3.810 19 C -0.253 4.253 20 C 0.057 3.943 21 C -0.328 4.328 22 C 0.535 3.465 23 F -0.183 7.183 24 F -0.170 7.170 25 F -0.174 7.174 26 C 0.544 3.456 27 O -0.523 6.523 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.023 0.977 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.266 0.734 34 H 0.390 0.610 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 12.924 10.967 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.270 3.730 15 O -0.412 6.412 16 C -0.062 4.062 17 N -0.178 5.178 18 C 0.059 3.941 19 C -0.275 4.275 20 C 0.035 3.965 21 C -0.334 4.334 22 C 0.481 3.519 23 F -0.164 7.164 24 F -0.151 7.151 25 F -0.156 7.156 26 C 0.344 3.656 27 O -0.403 6.403 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.417 11.946 10.370 19.509 hybrid contribution 1.127 -0.104 0.172 1.145 sum -10.290 11.842 10.542 18.901 Atomic orbital electron populations 1.21827 0.98124 0.98327 1.01168 1.21940 0.92701 0.99620 1.02374 1.18837 0.94271 0.89283 0.80468 0.93253 1.21161 0.90504 1.39566 1.06420 0.92059 1.24892 0.98678 0.94683 0.95358 1.69888 1.35320 1.37229 1.09294 0.86498 0.84698 0.78294 0.77547 1.20111 1.21097 1.20192 1.46454 1.14024 1.55415 1.18910 1.20267 0.83550 0.80557 0.88583 1.90742 1.50975 1.59569 1.39932 1.22087 0.81260 1.02242 1.00635 1.45044 1.08769 1.12210 1.51773 1.22296 1.00156 0.84173 0.87435 1.20588 0.90253 1.03224 1.13480 1.21428 1.00834 0.90489 0.83734 1.20669 0.93416 0.98395 1.20892 1.17477 0.81188 0.78328 0.74935 1.93130 1.50402 1.77982 1.94883 1.93246 1.96538 1.51489 1.73813 1.93205 1.96157 1.92244 1.33955 1.16093 0.84108 0.85781 0.79623 1.91039 1.85158 1.16797 1.47285 0.93397 0.94119 0.95746 0.94927 0.88240 0.92398 0.77721 0.85378 0.86050 0.81117 0.82495 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.90 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.26 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.15 11.30 55.43 0.63 -23.52 16 9 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.70 -13.24 5.02 -54.94 -0.28 -13.52 16 14 C 0.49 8.71 6.47 -10.99 -0.07 8.64 16 15 O -0.53 -11.73 13.57 5.56 0.08 -11.66 16 16 C 0.06 0.77 5.81 -5.19 -0.03 0.74 16 17 N -0.47 -6.03 2.07 -121.06 -0.25 -6.28 16 18 C 0.19 1.68 10.28 -16.84 -0.17 1.50 16 19 C -0.25 -1.92 10.01 -39.88 -0.40 -2.32 16 20 C 0.06 0.54 9.48 -39.51 -0.37 0.17 16 21 C -0.33 -4.48 5.38 -104.42 -0.56 -5.04 16 22 C 0.54 7.69 3.02 36.01 0.11 7.80 16 23 F -0.18 -2.18 16.00 2.25 0.04 -2.14 16 24 F -0.17 -2.86 17.01 2.25 0.04 -2.82 16 25 F -0.17 -2.63 17.01 2.25 0.04 -2.59 16 26 C 0.54 8.71 7.33 -15.45 -0.11 8.60 16 27 O -0.52 -10.32 15.64 4.87 0.08 -10.24 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 29 H 0.04 0.96 5.64 -51.93 -0.29 0.67 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.39 6.16 8.54 -40.82 -0.35 5.81 16 35 H 0.13 1.56 7.39 -51.93 -0.38 1.18 16 36 H 0.12 0.89 8.01 -51.93 -0.42 0.47 16 37 H 0.17 0.87 8.03 -52.48 -0.42 0.45 16 38 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.15 0.99 7.18 -52.49 -0.38 0.61 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -34.41 343.02 -5.64 -40.05 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.16 Total: 4.48 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.99 Total: 8.14 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.10 Total: -43.32 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.15 Total: -21.90 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.11 Total: -7.56 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.41 -5.64 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.256 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds