Wall clock time and date at job start Tue Mar 31 2020 16:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 N 1.46503 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.35761 * 119.62568 * 269.72463 * 17 16 14 19 19 C 1.35346 * 120.70348 * 179.75810 * 18 17 16 20 20 C 1.40203 * 119.94561 * 0.51866 * 19 18 17 21 21 C 1.36395 * 119.26216 * 359.74383 * 20 19 18 22 22 C 1.50710 * 120.34415 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.46909 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.47055 * 119.97387 * 22 21 20 25 25 F 1.39898 * 109.46960 * 239.97856 * 22 21 20 26 26 C 1.34663 * 119.62328 * 90.00519 * 17 16 14 27 27 O 1.22053 * 119.98358 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 35 35 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 36 36 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 37 37 H 1.08007 * 119.65126 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.02938 * 180.27611 * 19 18 17 39 39 H 1.08000 * 120.36554 * 179.72516 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 7 -1.3221 3.8709 2.5268 18 6 -1.5058 5.1381 2.0755 19 6 -2.7514 5.6511 1.9441 20 6 -3.8677 4.8749 2.2860 21 6 -3.6808 3.6038 2.7442 22 6 -4.8634 2.7478 3.1183 23 9 -6.0446 3.4688 2.9128 24 9 -4.8757 1.5964 2.3236 25 9 -4.7679 2.3836 4.4657 26 6 -2.3741 3.1006 2.8634 27 8 -2.1926 1.9649 3.2720 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.0673 2.6129 3.4685 36 1 0.7277 4.1529 2.8680 37 1 -0.6491 5.7421 1.8152 38 1 -2.8851 6.6590 1.5798 39 1 -4.8644 5.2790 2.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762719508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:03 Heat of formation + Delta-G solvation = -208.913434 kcal Electronic energy + Delta-G solvation = -29293.353753 eV Core-core repulsion = 24592.888407 eV Total energy + Delta-G solvation = -4700.465346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -51.15659 -48.69770 -48.60921 -42.67810 -40.52262 -38.18879 -37.08754 -35.88814 -34.34432 -32.97604 -31.75792 -29.94453 -28.48090 -27.43767 -25.17898 -24.24219 -23.86312 -22.23363 -21.23030 -19.85547 -19.67154 -19.51620 -19.07448 -18.27625 -17.94322 -17.81770 -17.38143 -16.77825 -16.44049 -16.38406 -15.79034 -15.59267 -15.46134 -15.41576 -15.06763 -14.81016 -14.79257 -14.75542 -14.61788 -14.28235 -14.15113 -13.62338 -13.50203 -13.22232 -13.14279 -13.06972 -12.91701 -12.74979 -12.64697 -12.23212 -12.10737 -11.74425 -11.64034 -11.30273 -11.08419 -10.71693 -10.51944 -9.69876 -9.26579 -8.15628 -6.33502 -0.51028 0.77279 1.19885 1.46893 1.48290 1.56050 1.70257 1.78348 2.22100 2.39771 2.66545 2.77657 3.03651 3.14243 3.42033 3.57593 3.69836 3.83291 3.93763 4.01146 4.20665 4.28727 4.41729 4.48918 4.61610 4.70313 4.89063 5.01613 5.05393 5.19115 5.36878 5.43421 5.50555 5.59898 5.74439 5.81988 5.88043 6.13482 6.72698 6.74476 6.90123 7.32820 7.50871 8.89531 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.002990 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.481031 B = 9361.806316 C = 9878.200796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.283 3.717 4 H 0.003 0.997 5 C -0.546 4.546 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.267 1.267 13 N -0.698 5.698 14 C 0.484 3.516 15 O -0.580 6.580 16 C 0.075 3.925 17 N -0.476 5.476 18 C 0.182 3.818 19 C -0.237 4.237 20 C 0.078 3.922 21 C -0.371 4.371 22 C 0.532 3.468 23 F -0.169 7.169 24 F -0.193 7.193 25 F -0.185 7.185 26 C 0.527 3.473 27 O -0.584 6.584 28 H 0.025 0.975 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.408 0.592 35 H 0.128 0.872 36 H 0.183 0.817 37 H 0.217 0.783 38 H 0.205 0.795 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 16.170 11.979 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.191 1.191 13 N -0.347 5.347 14 C 0.270 3.730 15 O -0.460 6.460 16 C -0.050 4.050 17 N -0.182 5.182 18 C 0.054 3.946 19 C -0.258 4.258 20 C 0.056 3.944 21 C -0.376 4.376 22 C 0.478 3.522 23 F -0.150 7.150 24 F -0.174 7.174 25 F -0.166 7.166 26 C 0.330 3.670 27 O -0.469 6.469 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.146 0.854 36 H 0.200 0.800 37 H 0.233 0.767 38 H 0.222 0.778 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.363 15.260 11.421 21.696 hybrid contribution 0.714 -0.980 -0.187 1.227 sum -9.649 14.281 11.234 20.573 Atomic orbital electron populations 1.21639 0.97598 0.98644 0.99829 1.21815 0.92965 1.00012 1.01226 1.18326 0.93775 0.88600 0.81378 0.97931 1.21549 0.91150 1.39038 1.06711 0.90391 1.25792 1.03293 0.94361 0.95097 1.70054 1.37213 1.38333 1.09898 0.85418 0.79083 0.78624 0.77335 1.19126 1.21662 1.19143 1.46151 1.15281 1.55488 1.17826 1.21197 0.82234 0.79562 0.90037 1.90722 1.51992 1.61029 1.42279 1.22127 0.82292 1.04051 0.96516 1.45084 1.08087 1.13352 1.51691 1.23243 1.02613 0.82763 0.86024 1.21246 0.88934 1.04647 1.11019 1.21927 1.03222 0.88672 0.80592 1.20601 0.91990 1.00199 1.24843 1.17681 0.82287 0.77996 0.74269 1.93140 1.49699 1.77390 1.94762 1.93190 1.96728 1.53082 1.74422 1.93172 1.96290 1.92423 1.34706 1.16534 0.85557 0.85504 0.79433 1.90985 1.86071 1.19240 1.50590 0.95570 0.94462 0.94512 0.94309 0.90926 0.92680 0.75639 0.85362 0.79968 0.76685 0.77767 0.80423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.91 16 3 C 0.28 13.87 2.24 44.24 0.10 13.97 16 4 H 0.00 0.16 7.58 -2.39 -0.02 0.15 16 5 C -0.55 -27.37 8.73 25.60 0.22 -27.14 16 6 H 0.08 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.77 5.29 84.65 0.45 1.21 16 8 N -0.92 -51.57 11.30 21.45 0.24 -51.33 16 9 Si 0.97 40.50 29.54 68.60 2.03 42.53 16 10 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.70 -25.96 5.02 -446.11 -2.24 -28.20 16 14 C 0.48 16.94 6.47 87.66 0.57 17.51 16 15 O -0.58 -25.82 13.57 -3.02 -0.04 -25.86 16 16 C 0.07 1.65 5.81 85.63 0.50 2.15 16 17 N -0.48 -11.19 2.07 -655.07 -1.36 -12.55 16 18 C 0.18 2.43 10.28 83.42 0.86 3.28 16 19 C -0.24 -2.45 10.01 22.08 0.22 -2.23 16 20 C 0.08 1.24 9.48 22.32 0.21 1.46 16 21 C -0.37 -9.94 5.38 -19.73 -0.11 -10.05 16 22 C 0.53 15.65 3.02 71.24 0.21 15.86 16 23 F -0.17 -3.92 16.00 44.97 0.72 -3.20 16 24 F -0.19 -6.89 17.01 44.97 0.76 -6.12 16 25 F -0.18 -5.82 17.01 44.97 0.76 -5.05 16 26 C 0.53 16.90 7.33 84.82 0.62 17.52 16 27 O -0.58 -24.08 15.64 -5.49 -0.09 -24.17 16 28 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 29 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 30 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 4.07 5.95 -2.39 -0.01 4.05 16 33 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.41 12.14 8.54 -92.71 -0.79 11.35 16 35 H 0.13 2.95 7.39 -2.39 -0.02 2.93 16 36 H 0.18 1.74 8.01 -2.39 -0.02 1.72 16 37 H 0.22 0.85 8.03 -2.91 -0.02 0.83 16 38 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.18 1.67 7.18 -2.91 -0.02 1.65 16 Total: -1.00 -82.34 343.02 5.76 -76.58 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.33 Total: 14.95 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 4.64 Total: 22.41 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -3.36 Total: -92.08 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.13 Total: -50.02 kcal Atomic # 9 Polarization: -16.62 SS G_CDS: 2.25 Total: -14.37 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -82.34 5.76 -76.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.334 kcal (2) G-P(sol) polarization free energy of solvation -82.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds