Wall clock time and date at job start Tue Mar 31 2020 16:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38634 * 119.96113 * 2 1 4 4 C 1.39263 * 117.94105 * 180.26404 * 3 2 1 5 5 N 1.39598 * 121.12037 * 179.74512 * 4 3 2 6 6 C 1.34775 * 120.00446 * 335.54024 * 5 4 3 7 7 O 1.21783 * 119.99701 * 354.14575 * 6 5 4 8 8 C 1.46171 * 120.00409 * 173.86405 * 6 5 4 9 9 S 1.75667 * 125.22569 * 0.30319 * 8 6 5 10 10 C 1.75476 * 92.09029 * 179.97438 * 9 8 6 11 11 C 1.32751 * 111.37642 * 359.97438 * 10 9 8 12 12 C 1.39587 * 125.23189 * 179.97438 * 8 6 5 13 13 C 1.40506 * 123.71896 * 0.03976 * 12 8 6 14 14 H 1.07998 * 120.00257 * 324.01481 * 13 12 8 15 15 C 1.40312 * 120.00068 * 144.01874 * 13 12 8 16 16 N 1.30632 * 120.00280 * 172.61773 * 15 13 12 17 17 Si 1.86809 * 119.99950 * 352.61426 * 15 13 12 18 18 H 1.48503 * 109.46977 * 90.37728 * 17 15 13 19 19 H 1.48492 * 109.47381 * 210.38113 * 17 15 13 20 20 H 1.48503 * 109.46945 * 330.38227 * 17 15 13 21 21 C 1.40228 * 117.75453 * 359.47218 * 4 3 2 22 22 N 1.39224 * 120.21602 * 180.24955 * 21 4 3 23 23 C 1.46892 * 111.00132 * 168.02785 * 22 21 4 24 24 C 1.46903 * 110.99734 * 291.98282 * 22 21 4 25 25 N 1.32274 * 119.57480 * 0.27542 * 21 4 3 26 26 N 1.28301 * 122.16329 * 359.97438 * 25 21 4 27 27 H 1.09007 * 109.46866 * 270.27581 * 1 2 3 28 28 H 1.09001 * 109.46993 * 30.27305 * 1 2 3 29 29 H 1.08997 * 109.47505 * 150.27782 * 1 2 3 30 30 H 1.07993 * 121.02917 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99953 * 155.54535 * 5 4 3 32 32 H 1.08003 * 124.31196 * 180.02562 * 10 9 8 33 33 H 1.07997 * 122.78895 * 180.02562 * 11 10 9 34 34 H 0.97008 * 120.00552 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.47393 * 60.00186 * 23 22 21 36 36 H 1.09005 * 109.47231 * 179.97438 * 23 22 21 37 37 H 1.09004 * 109.47408 * 299.99697 * 23 22 21 38 38 H 1.09003 * 109.47326 * 66.41972 * 24 22 21 39 39 H 1.09001 * 109.46809 * 186.42130 * 24 22 21 40 40 H 1.09004 * 109.47103 * 306.41957 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1993 1.2011 0.0000 4 6 3.5910 1.1520 -0.0057 5 7 4.3542 2.3209 -0.0113 6 6 3.8310 3.4650 -0.4949 7 8 2.7341 3.4571 -1.0238 8 6 4.5775 4.7163 -0.3790 9 16 6.1646 4.8852 0.3548 10 6 6.2004 6.6100 0.0338 11 6 5.0938 7.0109 -0.5802 12 6 4.1417 5.9597 -0.8402 13 6 2.9094 6.1648 -1.4833 14 1 2.5144 5.4100 -2.1470 15 6 2.1921 7.3505 -1.2633 16 7 1.1219 7.6066 -1.9672 17 14 2.7673 8.5627 0.0365 18 1 3.6986 9.5426 -0.5782 19 1 1.5946 9.2796 0.5984 20 1 3.4663 7.8295 1.1223 21 6 4.1999 -0.1112 0.0004 22 7 5.5879 -0.2199 0.0004 23 6 6.0081 -1.5970 0.2916 24 6 6.1523 0.2444 -1.2739 25 7 3.4471 -1.1988 0.0057 26 7 2.1654 -1.1422 0.0059 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6756 2.1455 0.0004 31 1 5.2611 2.3097 0.3327 32 1 7.0188 7.2621 0.3009 33 1 4.9226 8.0385 -0.8651 34 1 0.6257 8.4261 -1.8149 35 1 5.6050 -2.2680 -0.4669 36 1 7.0966 -1.6539 0.2850 37 1 5.6345 -1.8912 1.2725 38 1 5.9819 1.3160 -1.3778 39 1 7.2235 0.0434 -1.2915 40 1 5.6703 -0.2817 -2.0979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875816810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:07 Heat of formation + Delta-G solvation = 63.327098 kcal Electronic energy + Delta-G solvation = -26010.679631 eV Core-core repulsion = 22338.921883 eV Total energy + Delta-G solvation = -3671.757748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19324 -38.84336 -37.51912 -36.55109 -34.48150 -33.50166 -33.07819 -30.87015 -29.35008 -28.09214 -27.55731 -26.77890 -25.13585 -23.47790 -22.16617 -21.72363 -20.52363 -19.30196 -18.62208 -17.09946 -16.88235 -16.58236 -15.98139 -15.60836 -15.38094 -14.56679 -14.49573 -14.31072 -14.09699 -13.84659 -13.67497 -13.50208 -13.30581 -12.69611 -12.64824 -12.43216 -12.31904 -12.25015 -12.05658 -11.79836 -11.75524 -11.56585 -11.09875 -10.97756 -10.63975 -10.60373 -10.24812 -10.15484 -9.86226 -9.61059 -9.50164 -8.98255 -8.47677 -8.03148 -7.81780 -7.53541 -7.27982 -4.79467 1.12297 1.17704 1.66256 2.61329 2.77978 2.94582 2.98065 3.18604 3.26649 3.44299 3.47559 3.65192 3.78229 4.12995 4.36967 4.72181 4.83386 4.95089 5.08315 5.21062 5.29326 5.43102 5.53287 5.58547 5.60928 5.69795 5.73740 5.79910 5.91358 5.97977 6.03831 6.16377 6.32214 6.45356 6.62189 6.68586 6.73681 6.79138 6.88983 7.13453 7.38022 7.95522 8.04141 8.17458 8.45834 9.02601 9.04060 9.67584 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.004301 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.066695 B = 6508.705097 C = 8109.827772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.075 3.925 3 C -0.137 4.137 4 C 0.185 3.815 5 N -0.667 5.667 6 C 0.588 3.412 7 O -0.527 6.527 8 C -0.418 4.418 9 S -0.014 6.014 10 C -0.172 4.172 11 C -0.162 4.162 12 C 0.112 3.888 13 C -0.353 4.353 14 H 0.117 0.883 15 C 0.076 3.924 16 N -0.769 5.769 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.239 1.239 21 C 0.199 3.801 22 N -0.479 5.479 23 C 0.034 3.966 24 C 0.021 3.979 25 N -0.260 5.260 26 N -0.265 5.265 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.173 0.827 31 H 0.412 0.588 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.294 0.706 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -6.289 3.939 9.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.169 4.169 4 C 0.073 3.927 5 N -0.310 5.310 6 C 0.388 3.612 7 O -0.408 6.408 8 C -0.537 4.537 9 S 0.243 5.757 10 C -0.307 4.307 11 C -0.195 4.195 12 C 0.101 3.899 13 C -0.383 4.383 14 H 0.135 0.865 15 C -0.148 4.148 16 N -0.392 5.392 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.162 1.162 21 C -0.044 4.044 22 N -0.200 5.200 23 C -0.113 4.113 24 C -0.126 4.126 25 N -0.105 5.105 26 N -0.110 5.110 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.191 0.809 31 H 0.249 0.751 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.330 -8.395 4.505 11.439 hybrid contribution -0.335 2.832 -0.562 2.906 sum 5.995 -5.564 3.944 9.080 Atomic orbital electron populations 1.20607 0.87663 1.03857 1.03203 1.22647 0.98818 0.89594 0.95954 1.22529 0.92380 1.01421 1.00575 1.18453 0.91769 0.86319 0.96198 1.43678 1.17651 1.06983 1.62735 1.17001 0.85477 0.81273 0.77483 1.90723 1.20633 1.84749 1.44650 1.22433 1.02711 0.96937 1.31605 1.82966 1.20699 1.04626 1.67409 1.24972 1.02061 0.98347 1.05285 1.21512 0.95006 1.00001 1.02982 1.17918 0.93624 0.88644 0.89709 1.19676 0.99715 1.01163 1.17755 0.86543 1.26458 0.94350 0.97871 0.96111 1.69530 1.13079 1.24252 1.32309 0.86412 0.78935 0.79626 0.81914 1.18827 1.20561 1.16226 1.21220 0.91454 0.90016 1.01673 1.59370 1.03489 1.24974 1.32144 1.22279 1.00227 0.86386 1.02418 1.22571 1.00235 1.02122 0.87661 1.72915 1.00096 1.25212 1.12281 1.72531 1.00317 1.24825 1.13280 0.90258 0.90049 0.90377 0.80937 0.75062 0.83503 0.85327 0.89461 0.93450 0.90976 0.90785 0.90208 0.89789 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.19 36.00 0.37 -0.84 16 2 C 0.08 1.25 6.86 -82.44 -0.57 0.69 16 3 C -0.14 -2.53 8.53 -39.05 -0.33 -2.86 16 4 C 0.18 3.40 6.30 -83.19 -0.52 2.88 16 5 N -0.67 -12.47 4.07 -10.82 -0.04 -12.51 16 6 C 0.59 13.07 7.59 -13.08 -0.10 12.97 16 7 O -0.53 -13.10 11.94 5.11 0.06 -13.03 16 8 C -0.42 -9.33 6.50 -35.90 -0.23 -9.57 16 9 S -0.01 -0.25 22.26 -107.50 -2.39 -2.65 16 10 C -0.17 -3.10 11.06 28.86 0.32 -2.78 16 11 C -0.16 -3.31 7.37 -39.12 -0.29 -3.60 16 12 C 0.11 2.64 5.09 -106.20 -0.54 2.10 16 13 C -0.35 -9.00 8.73 -37.95 -0.33 -9.33 16 14 H 0.12 3.32 6.81 -52.49 -0.36 2.97 16 15 C 0.08 1.82 5.52 -17.28 -0.10 1.72 16 16 N -0.77 -18.71 13.92 55.57 0.77 -17.94 16 17 Si 0.91 18.11 24.61 -169.99 -4.18 13.92 16 18 H -0.26 -4.87 6.73 56.52 0.38 -4.49 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.24 -4.93 6.63 56.52 0.37 -4.55 16 21 C 0.20 3.37 6.22 -154.50 -0.96 2.41 16 22 N -0.48 -6.78 4.58 -188.57 -0.86 -7.65 16 23 C 0.03 0.40 8.81 60.06 0.53 0.93 16 24 C 0.02 0.27 9.22 60.07 0.55 0.82 16 25 N -0.26 -4.60 9.96 31.39 0.31 -4.29 16 26 N -0.26 -4.70 11.40 33.58 0.38 -4.32 16 27 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.17 3.43 5.96 -52.49 -0.31 3.12 16 31 H 0.41 7.02 6.81 -40.82 -0.28 6.74 16 32 H 0.15 2.11 8.06 -52.48 -0.42 1.68 16 33 H 0.13 2.47 5.17 -52.49 -0.27 2.20 16 34 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 35 H 0.05 0.58 7.77 -51.93 -0.40 0.18 16 36 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 37 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 38 H 0.08 1.13 6.34 -51.93 -0.33 0.80 16 39 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 40 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -27.92 343.09 -7.49 -35.40 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -4.50 Total: 12.34 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.20 Total: -4.45 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.56 Total: -46.71 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.03 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -4.18 Total: 13.92 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.39 Total: -2.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.92 -7.49 -35.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875816810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.731 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds