Wall clock time and date at job start Tue Mar 31 2020 16:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38634 * 119.96113 * 2 1 4 4 C 1.39263 * 117.94105 * 180.26404 * 3 2 1 5 5 N 1.39598 * 121.12037 * 179.74512 * 4 3 2 6 6 C 1.34775 * 120.00446 * 335.54024 * 5 4 3 7 7 O 1.21783 * 119.99701 * 354.14575 * 6 5 4 8 8 C 1.46171 * 120.00409 * 173.86405 * 6 5 4 9 9 S 1.75667 * 125.22569 * 0.30319 * 8 6 5 10 10 C 1.75476 * 92.09029 * 179.97438 * 9 8 6 11 11 C 1.32751 * 111.37642 * 359.97438 * 10 9 8 12 12 C 1.39587 * 125.23189 * 179.97438 * 8 6 5 13 13 C 1.40506 * 123.71896 * 0.03976 * 12 8 6 14 14 H 1.07998 * 120.00257 * 324.01481 * 13 12 8 15 15 C 1.40312 * 120.00068 * 144.01874 * 13 12 8 16 16 N 1.30632 * 120.00280 * 172.61773 * 15 13 12 17 17 Si 1.86809 * 119.99950 * 352.61426 * 15 13 12 18 18 H 1.48503 * 109.46977 * 90.37728 * 17 15 13 19 19 H 1.48492 * 109.47381 * 210.38113 * 17 15 13 20 20 H 1.48503 * 109.46945 * 330.38227 * 17 15 13 21 21 C 1.40228 * 117.75453 * 359.47218 * 4 3 2 22 22 N 1.39224 * 120.21602 * 180.24955 * 21 4 3 23 23 C 1.46892 * 111.00132 * 168.02785 * 22 21 4 24 24 C 1.46903 * 110.99734 * 291.98282 * 22 21 4 25 25 N 1.32274 * 119.57480 * 0.27542 * 21 4 3 26 26 N 1.28301 * 122.16329 * 359.97438 * 25 21 4 27 27 H 1.09007 * 109.46866 * 270.27581 * 1 2 3 28 28 H 1.09001 * 109.46993 * 30.27305 * 1 2 3 29 29 H 1.08997 * 109.47505 * 150.27782 * 1 2 3 30 30 H 1.07993 * 121.02917 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99953 * 155.54535 * 5 4 3 32 32 H 1.08003 * 124.31196 * 180.02562 * 10 9 8 33 33 H 1.07997 * 122.78895 * 180.02562 * 11 10 9 34 34 H 0.97008 * 120.00552 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.47393 * 60.00186 * 23 22 21 36 36 H 1.09005 * 109.47231 * 179.97438 * 23 22 21 37 37 H 1.09004 * 109.47408 * 299.99697 * 23 22 21 38 38 H 1.09003 * 109.47326 * 66.41972 * 24 22 21 39 39 H 1.09001 * 109.46809 * 186.42130 * 24 22 21 40 40 H 1.09004 * 109.47103 * 306.41957 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1993 1.2011 0.0000 4 6 3.5910 1.1520 -0.0057 5 7 4.3542 2.3209 -0.0113 6 6 3.8310 3.4650 -0.4949 7 8 2.7341 3.4571 -1.0238 8 6 4.5775 4.7163 -0.3790 9 16 6.1646 4.8852 0.3548 10 6 6.2004 6.6100 0.0338 11 6 5.0938 7.0109 -0.5802 12 6 4.1417 5.9597 -0.8402 13 6 2.9094 6.1648 -1.4833 14 1 2.5144 5.4100 -2.1470 15 6 2.1921 7.3505 -1.2633 16 7 1.1219 7.6066 -1.9672 17 14 2.7673 8.5627 0.0365 18 1 3.6986 9.5426 -0.5782 19 1 1.5946 9.2796 0.5984 20 1 3.4663 7.8295 1.1223 21 6 4.1999 -0.1112 0.0004 22 7 5.5879 -0.2199 0.0004 23 6 6.0081 -1.5970 0.2916 24 6 6.1523 0.2444 -1.2739 25 7 3.4471 -1.1988 0.0057 26 7 2.1654 -1.1422 0.0059 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6756 2.1455 0.0004 31 1 5.2611 2.3097 0.3327 32 1 7.0188 7.2621 0.3009 33 1 4.9226 8.0385 -0.8651 34 1 0.6257 8.4261 -1.8149 35 1 5.6050 -2.2680 -0.4669 36 1 7.0966 -1.6539 0.2850 37 1 5.6345 -1.8912 1.2725 38 1 5.9819 1.3160 -1.3778 39 1 7.2235 0.0434 -1.2915 40 1 5.6703 -0.2817 -2.0979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875816810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:06 Heat of formation + Delta-G solvation = 44.852719 kcal Electronic energy + Delta-G solvation = -26011.480741 eV Core-core repulsion = 22338.921883 eV Total energy + Delta-G solvation = -3672.558857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.59980 -40.52158 -38.72780 -38.17706 -36.12597 -35.22117 -34.36502 -32.37133 -30.97455 -29.28761 -28.64235 -28.44941 -26.41342 -24.93453 -23.65511 -23.06629 -22.10813 -20.97807 -20.22110 -18.43554 -18.36666 -18.11052 -17.56538 -17.04021 -16.86178 -16.12344 -15.93955 -15.52795 -15.41296 -15.37339 -15.10171 -15.00685 -14.80936 -14.29779 -13.99302 -13.76789 -13.43457 -13.41122 -13.27945 -13.14516 -13.09864 -12.74585 -12.68943 -12.50989 -12.31827 -12.03048 -11.85254 -11.56893 -11.38494 -11.24262 -10.90822 -10.59703 -9.97013 -9.57548 -9.28923 -9.13142 -8.99855 -6.60561 -0.36765 -0.20763 0.07173 1.10764 1.20548 1.34766 1.42455 1.50058 1.64335 1.91768 2.04471 2.15538 2.30102 2.57480 3.04353 3.05711 3.38771 3.69106 3.77032 4.11698 4.19510 4.22883 4.26052 4.38786 4.50579 4.55005 4.64875 4.68741 4.70948 4.74836 4.79509 4.97010 4.98279 5.02534 5.12754 5.21296 5.25645 5.34247 5.62749 5.68670 5.82251 6.14407 6.33126 6.43026 6.61849 7.30019 7.64305 8.02021 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.004301 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.066695 B = 6508.705097 C = 8109.827772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.077 3.923 3 C -0.151 4.151 4 C 0.165 3.835 5 N -0.652 5.652 6 C 0.585 3.415 7 O -0.562 6.562 8 C -0.445 4.445 9 S 0.052 5.948 10 C -0.148 4.148 11 C -0.194 4.194 12 C 0.106 3.894 13 C -0.400 4.400 14 H 0.062 0.938 15 C 0.041 3.959 16 N -0.819 5.819 17 Si 0.966 3.034 18 H -0.232 1.232 19 H -0.273 1.273 20 H -0.246 1.246 21 C 0.207 3.793 22 N -0.480 5.480 23 C 0.035 3.965 24 C 0.022 3.978 25 N -0.269 5.269 26 N -0.273 5.273 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.421 0.579 32 H 0.197 0.803 33 H 0.142 0.858 34 H 0.303 0.697 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.121 0.879 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.409 -6.303 5.900 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C -0.183 4.183 4 C 0.054 3.946 5 N -0.296 5.296 6 C 0.383 3.617 7 O -0.444 6.444 8 C -0.563 4.563 9 S 0.310 5.690 10 C -0.283 4.283 11 C -0.227 4.227 12 C 0.094 3.906 13 C -0.432 4.432 14 H 0.080 0.920 15 C -0.178 4.178 16 N -0.443 5.443 17 Si 0.786 3.214 18 H -0.156 1.156 19 H -0.199 1.199 20 H -0.169 1.169 21 C -0.036 4.036 22 N -0.201 5.201 23 C -0.112 4.112 24 C -0.124 4.124 25 N -0.113 5.113 26 N -0.118 5.118 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.170 0.830 31 H 0.260 0.740 32 H 0.214 0.786 33 H 0.160 0.840 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.631 -8.463 6.464 14.358 hybrid contribution -1.186 2.542 -1.117 3.019 sum 8.445 -5.922 5.347 11.618 Atomic orbital electron populations 1.20727 0.84979 1.04619 1.04776 1.23088 1.00544 0.88482 0.94740 1.22503 0.92888 1.01411 1.01489 1.18652 0.91931 0.86775 0.97279 1.43333 1.17848 1.06253 1.62197 1.17250 0.85071 0.82322 0.77017 1.90722 1.22259 1.85537 1.45916 1.22951 1.05487 0.96724 1.31183 1.82682 1.16305 1.04770 1.65246 1.25603 1.02006 0.98646 1.02012 1.21464 0.95312 1.00055 1.05867 1.18232 0.93300 0.90363 0.88667 1.19417 1.01981 1.01453 1.20305 0.91990 1.27228 0.93983 0.98949 0.97689 1.69572 1.14663 1.25599 1.34508 0.85549 0.79157 0.77771 0.78957 1.15605 1.19910 1.16914 1.21386 0.92900 0.88963 1.00356 1.59449 1.01492 1.26535 1.32597 1.22391 1.02307 0.84638 1.01857 1.22635 1.02319 1.00792 0.86648 1.72895 1.00243 1.25418 1.12754 1.72513 1.00624 1.25127 1.13501 0.88137 0.90005 0.88833 0.82959 0.73994 0.78550 0.84025 0.88587 0.94001 0.87541 0.91258 0.91980 0.86035 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.33 10.19 71.23 0.73 -1.60 16 2 C 0.08 2.61 6.86 42.65 0.29 2.90 16 3 C -0.15 -5.81 8.53 22.61 0.19 -5.61 16 4 C 0.17 6.19 6.30 38.63 0.24 6.43 16 5 N -0.65 -24.63 4.07 -306.34 -1.25 -25.88 16 6 C 0.58 26.96 7.59 86.30 0.65 27.61 16 7 O -0.56 -30.04 11.94 -4.61 -0.06 -30.10 16 8 C -0.44 -19.95 6.50 24.66 0.16 -19.79 16 9 S 0.05 1.74 22.26 -56.49 -1.26 0.48 16 10 C -0.15 -4.68 11.06 66.64 0.74 -3.94 16 11 C -0.19 -7.55 7.37 22.61 0.17 -7.38 16 12 C 0.11 5.08 5.09 -20.89 -0.11 4.97 16 13 C -0.40 -21.86 8.73 23.33 0.20 -21.66 16 14 H 0.06 3.94 6.81 -2.91 -0.02 3.92 16 15 C 0.04 2.03 5.52 85.38 0.47 2.50 16 16 N -0.82 -42.43 13.92 21.89 0.30 -42.13 16 17 Si 0.97 37.15 24.61 68.60 1.69 38.84 16 18 H -0.23 -7.73 6.73 99.48 0.67 -7.06 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.25 -9.59 6.63 99.48 0.66 -8.93 16 21 C 0.21 6.91 6.22 133.29 0.83 7.74 16 22 N -0.48 -12.70 4.58 -750.51 -3.44 -16.13 16 23 C 0.03 0.72 8.81 127.69 1.13 1.85 16 24 C 0.02 0.53 9.22 127.69 1.18 1.70 16 25 N -0.27 -9.35 9.96 -54.62 -0.54 -9.90 16 26 N -0.27 -9.64 11.40 -47.66 -0.54 -10.18 16 27 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.08 2.05 8.09 -2.39 -0.02 2.03 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.15 6.53 5.96 -2.91 -0.02 6.51 16 31 H 0.42 13.94 6.81 -92.71 -0.63 13.31 16 32 H 0.20 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.14 5.08 5.17 -2.91 -0.02 5.06 16 34 H 0.30 13.78 8.29 -92.70 -0.77 13.01 16 35 H 0.04 0.94 7.77 -2.39 -0.02 0.92 16 36 H 0.11 1.51 8.05 -2.38 -0.02 1.49 16 37 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 38 H 0.06 1.69 6.34 -2.39 -0.02 1.67 16 39 H 0.12 1.93 8.01 -2.39 -0.02 1.92 16 40 H 0.03 0.78 8.10 -2.39 -0.02 0.76 16 Total: -1.00 -66.29 343.09 2.17 -64.11 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: 0.39 Total: 35.15 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 6.87 Total: -4.27 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.47 Total: -104.22 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.06 Total: -30.10 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 1.69 Total: 38.84 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.26 Total: 0.48 kcal Total: -66.29 2.17 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875816810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.964 kcal (2) G-P(sol) polarization free energy of solvation -66.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds